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BioC experimental data: CHECK report for geneLenDataBase on morelia

This page was generated on 2015-11-25 16:26:18 -0800 (Wed, 25 Nov 2015).

Package 98/258HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
geneLenDataBase 1.7.0
Nadia Davidson
Snapshot Date: 2015-11-25 07:17:28 -0800 (Wed, 25 Nov 2015)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/geneLenDataBase
Last Changed Rev: 3462 / Revision: 3504
Last Changed Date: 2015-10-13 13:20:35 -0700 (Tue, 13 Oct 2015)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  WARNINGS UNNEEDED, same version exists in internal repository
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK  WARNINGS  OK 
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK [ WARNINGS ] OK 

Summary

Package: geneLenDataBase
Version: 1.7.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings geneLenDataBase_1.7.0.tar.gz
StartedAt: 2015-11-25 10:36:09 -0800 (Wed, 25 Nov 2015)
EndedAt: 2015-11-25 10:44:25 -0800 (Wed, 25 Nov 2015)
EllapsedTime: 496.2 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: geneLenDataBase.Rcheck
Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings geneLenDataBase_1.7.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.3-data-experiment/meat/geneLenDataBase.Rcheck’
* using R Under development (unstable) (2015-11-08 r69614)
* using platform: x86_64-apple-darwin13.4.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘geneLenDataBase/DESCRIPTION’ ... OK
* this is package ‘geneLenDataBase’ version ‘1.7.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘geneLenDataBase’ can be installed ... [18s/31s] OK
* checking installed package size ... NOTE
  installed size is 100.3Mb
  sub-directories of 1Mb or more:
    data  99.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
':::' call which should be '::': ‘GenomicFeatures:::supportedUCSCtables’
  See the note in ?`:::` about the use of this operator.
Unexported object imported by a ':::' call: ‘GenomicFeatures:::.UCSC_TXNAME2GENEID_MAPDEFS’
  See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... WARNING
Missing link or links in documentation object 'anoCar1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoCar1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoCar1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'aplCal1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'braFlo1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeJap1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caePb1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caePb2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeRem2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeRem3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cb1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cb3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.vegaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.vegaPseudoGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.nscanPasaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droEre1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droEre1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droGri1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droGri1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droPer1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droPer1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSec1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSec1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'gasAcu1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'gasAcu1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.acescan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.vegaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.vegaPseudoGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.acescan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.knownGeneOld3.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.sibGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'loxAfr3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.sibGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'petMar1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'priPac1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'sacCer1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'sacCer2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

See section 'Cross-references' in the 'Writing R Extensions' manual.

* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [93s/154s] OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 3 NOTEs
See
  ‘/Users/biocbuild/bbs-3.3-data-experiment/meat/geneLenDataBase.Rcheck/00check.log’
for details.


geneLenDataBase.Rcheck/00install.out:

* installing *source* package ‘geneLenDataBase’ ...
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (geneLenDataBase)

geneLenDataBase.Rcheck/geneLenDataBase-Ex.timings:

nameusersystemelapsed
anoCar1.ensGene.LENGTH0.1200.0030.124
anoCar1.genscan.LENGTH0.0600.0000.062
anoCar1.xenoRefGene.LENGTH1.2570.0111.271
anoGam1.ensGene.LENGTH0.0800.0010.081
anoGam1.geneid.LENGTH0.0550.0020.057
anoGam1.genscan.LENGTH0.0700.0030.073
apiMel1.genscan.LENGTH0.0770.0010.078
apiMel2.ensGene.LENGTH0.1360.0010.138
apiMel2.geneid.LENGTH0.0510.0010.051
apiMel2.genscan.LENGTH0.0350.0010.037
aplCal1.xenoRefGene.LENGTH0.6090.0030.613
bosTau2.geneSymbol.LENGTH0.0530.0010.054
bosTau2.geneid.LENGTH0.5560.0030.563
bosTau2.genscan.LENGTH0.1230.0010.157
bosTau2.refGene.LENGTH0.0720.0010.078
bosTau2.sgpGene.LENGTH0.1300.0010.131
bosTau3.ensGene.LENGTH0.1460.0030.149
bosTau3.geneSymbol.LENGTH0.0380.0000.039
bosTau3.geneid.LENGTH0.1910.0020.193
bosTau3.genscan.LENGTH0.0870.0010.088
bosTau3.refGene.LENGTH0.0410.0000.042
bosTau3.sgpGene.LENGTH0.1800.0020.188
bosTau4.ensGene.LENGTH0.2810.0020.330
bosTau4.geneSymbol.LENGTH0.0610.0010.082
bosTau4.genscan.LENGTH0.1610.0030.180
bosTau4.nscanGene.LENGTH0.0480.0010.056
bosTau4.refGene.LENGTH0.0380.0010.038
braFlo1.xenoRefGene.LENGTH0.5710.0010.573
caeJap1.xenoRefGene.LENGTH0.6770.0020.700
caePb1.xenoRefGene.LENGTH0.6180.0030.622
caePb2.xenoRefGene.LENGTH0.8090.0050.831
caeRem2.xenoRefGene.LENGTH0.6110.0030.615
caeRem3.xenoRefGene.LENGTH0.7160.0040.734
calJac1.genscan.LENGTH0.1350.0020.137
calJac1.nscanGene.LENGTH0.4740.0040.482
calJac1.xenoRefGene.LENGTH1.4060.0081.781
canFam1.ensGene.LENGTH0.2610.0030.267
canFam1.geneSymbol.LENGTH0.0090.0020.011
canFam1.genscan.LENGTH0.1100.0020.112
canFam1.nscanGene.LENGTH0.1020.0040.107
canFam1.refGene.LENGTH0.0080.0020.011
canFam1.xenoRefGene.LENGTH1.3490.0071.373
canFam2.ensGene.LENGTH0.5100.0030.867
canFam2.geneSymbol.LENGTH0.0090.0000.025
canFam2.genscan.LENGTH0.1100.0010.268
canFam2.nscanGene.LENGTH0.1220.0010.284
canFam2.refGene.LENGTH0.0080.0010.017
canFam2.xenoRefGene.LENGTH1.2240.0051.470
cavPor3.ensGene.LENGTH0.2650.0020.270
cavPor3.genscan.LENGTH0.1820.0010.186
cavPor3.nscanGene.LENGTH0.1080.0010.110
cavPor3.xenoRefGene.LENGTH1.6120.0051.630
cb1.xenoRefGene.LENGTH0.8100.0040.828
cb3.xenoRefGene.LENGTH0.6850.0040.697
ce2.geneSymbol.LENGTH0.1140.0010.117
ce2.geneid.LENGTH0.0970.0000.100
ce2.refGene.LENGTH0.1000.0000.102
ce4.geneSymbol.LENGTH0.1160.0010.120
ce4.refGene.LENGTH0.1360.0010.138
ce4.xenoRefGene.LENGTH0.1320.0010.133
ce6.ensGene.LENGTH0.1670.0010.169
ce6.geneSymbol.LENGTH0.1100.0010.112
ce6.refGene.LENGTH0.1110.0020.113
ce6.xenoRefGene.LENGTH0.1360.0010.137
ci1.geneSymbol.LENGTH0.0090.0010.009
ci1.refGene.LENGTH0.0080.0010.011
ci1.xenoRefGene.LENGTH0.3430.0020.541
ci2.ensGene.LENGTH0.1060.0010.138
ci2.geneSymbol.LENGTH0.0050.0000.005
ci2.refGene.LENGTH0.0060.0010.007
ci2.xenoRefGene.LENGTH0.5630.0030.570
danRer3.ensGene.LENGTH0.1630.0010.166
danRer3.geneSymbol.LENGTH0.0980.0010.101
danRer3.refGene.LENGTH0.0820.0010.084
danRer4.ensGene.LENGTH0.2860.0010.288
danRer4.geneSymbol.LENGTH0.0690.0010.070
danRer4.genscan.LENGTH0.1030.0010.105
danRer4.nscanGene.LENGTH0.1380.0010.138
danRer4.refGene.LENGTH0.0960.0010.098
danRer5.ensGene.LENGTH0.5240.0040.531
danRer5.geneSymbol.LENGTH0.0880.0020.090
danRer5.refGene.LENGTH0.0710.0010.072
danRer5.vegaGene.LENGTH0.0770.0010.079
danRer5.vegaPseudoGene.LENGTH0.0040.0010.005
danRer6.ensGene.LENGTH0.2280.0020.307
danRer6.geneSymbol.LENGTH0.0910.0010.110
danRer6.refGene.LENGTH0.0880.0010.122
danRer6.xenoRefGene.LENGTH1.0360.0071.310
dm1.geneSymbol.LENGTH0.0940.0010.096
dm1.genscan.LENGTH0.0310.0000.031
dm1.refGene.LENGTH0.0760.0020.078
dm2.geneSymbol.LENGTH0.0790.0010.081
dm2.geneid.LENGTH0.0640.0010.066
dm2.genscan.LENGTH0.0420.0010.043
dm2.nscanGene.LENGTH0.1390.0010.140
dm2.refGene.LENGTH0.1010.0010.103
dm3.geneSymbol.LENGTH0.0940.0010.094
dm3.nscanPasaGene.LENGTH0.0690.0010.071
dm3.refGene.LENGTH0.1080.0010.110
dp2.genscan.LENGTH0.0430.0010.042
dp2.xenoRefGene.LENGTH0.3190.0020.322
dp3.geneid.LENGTH0.0550.0000.055
dp3.genscan.LENGTH0.0300.0020.031
dp3.xenoRefGene.LENGTH0.1810.0010.183
droAna1.geneid.LENGTH0.1090.0020.111
droAna1.genscan.LENGTH0.1120.0010.114
droAna1.xenoRefGene.LENGTH0.3870.0020.390
droAna2.genscan.LENGTH0.0810.0010.082
droAna2.xenoRefGene.LENGTH0.4840.0040.491
droEre1.genscan.LENGTH0.0460.0020.048
droEre1.xenoRefGene.LENGTH0.3130.0020.316
droGri1.genscan.LENGTH0.0570.0010.059
droGri1.xenoRefGene.LENGTH0.4660.0020.469
droMoj1.geneid.LENGTH0.4690.0010.473
droMoj1.genscan.LENGTH0.0700.0010.072
droMoj1.xenoRefGene.LENGTH0.3390.0020.347
droMoj2.genscan.LENGTH0.0500.0010.051
droMoj2.xenoRefGene.LENGTH0.4970.0020.519
droPer1.genscan.LENGTH0.0530.0020.055
droPer1.xenoRefGene.LENGTH0.3950.0030.400
droSec1.genscan.LENGTH0.0330.0010.034
droSec1.xenoRefGene.LENGTH0.5530.0030.691
droSim1.geneid.LENGTH0.0540.0010.055
droSim1.genscan.LENGTH0.0390.0000.040
droSim1.xenoRefGene.LENGTH0.4220.0020.427
droVir1.geneid.LENGTH0.1860.0020.194
droVir1.genscan.LENGTH0.0700.0020.074
droVir1.xenoRefGene.LENGTH0.4720.0020.509
droVir2.genscan.LENGTH0.0540.0000.055
droVir2.xenoRefGene.LENGTH0.6490.0041.187
droYak1.geneid.LENGTH0.0760.0010.077
droYak1.genscan.LENGTH0.0360.0010.038
droYak1.xenoRefGene.LENGTH0.4250.0020.430
droYak2.genscan.LENGTH0.0390.0010.041
droYak2.xenoRefGene.LENGTH0.4070.0010.409
equCab1.geneSymbol.LENGTH0.0080.0000.008
equCab1.geneid.LENGTH0.1730.0020.176
equCab1.nscanGene.LENGTH0.0700.0010.071
equCab1.refGene.LENGTH0.0080.0000.009
equCab1.sgpGene.LENGTH0.1300.0020.130
equCab2.ensGene.LENGTH0.1880.0020.191
equCab2.geneSymbol.LENGTH0.0100.0000.009
equCab2.nscanGene.LENGTH0.0780.0010.080
equCab2.refGene.LENGTH0.0100.0010.011
equCab2.xenoRefGene.LENGTH1.1750.0071.187
felCat3.ensGene.LENGTH0.2020.0010.205
felCat3.geneSymbol.LENGTH0.0060.0010.007
felCat3.geneid.LENGTH1.1920.0131.210
felCat3.genscan.LENGTH0.4020.0050.415
felCat3.nscanGene.LENGTH0.1500.0020.155
felCat3.refGene.LENGTH0.0050.0000.007
felCat3.sgpGene.LENGTH0.2440.0010.249
felCat3.xenoRefGene.LENGTH2.7350.0143.202
fr1.ensGene.LENGTH0.1360.0010.140
fr1.genscan.LENGTH0.0930.0010.095
fr2.ensGene.LENGTH0.2600.0020.505
galGal2.ensGene.LENGTH0.1100.0010.252
galGal2.geneSymbol.LENGTH0.0280.0000.051
galGal2.geneid.LENGTH0.0680.0020.159
galGal2.genscan.LENGTH0.0870.0030.191
galGal2.refGene.LENGTH0.0270.0010.065
galGal2.sgpGene.LENGTH0.0800.0020.084
galGal3.ensGene.LENGTH0.1370.0010.140
galGal3.geneSymbol.LENGTH0.0270.0000.028
galGal3.genscan.LENGTH0.1690.0020.175
galGal3.nscanGene.LENGTH0.1180.0020.120
galGal3.refGene.LENGTH0.0250.0010.026
galGal3.xenoRefGene.LENGTH0.9780.0060.995
gasAcu1.ensGene.LENGTH0.1470.0010.148
gasAcu1.nscanGene.LENGTH0.2320.0030.236
hg16.acembly.LENGTH0.8310.0090.855
hg16.ensGene.LENGTH0.1430.0010.159
hg16.exoniphy.LENGTH0.7640.0040.843
hg16.geneSymbol.LENGTH0.1830.0020.448
hg16.geneid.LENGTH0.0710.0010.287
hg16.genscan.LENGTH0.0990.0020.218
hg16.knownGene.LENGTH0.2180.0020.714
hg16.refGene.LENGTH0.1780.0030.703
hg16.sgpGene.LENGTH0.0940.0010.198
hg17.acembly.LENGTH0.7860.0051.013
hg17.acescan.LENGTH0.0130.0010.025
hg17.ccdsGene.LENGTH0.0370.0010.039
hg17.ensGene.LENGTH0.1950.0020.202
hg17.exoniphy.LENGTH0.8540.0051.097
hg17.geneSymbol.LENGTH0.1900.0010.375
hg17.geneid.LENGTH0.1430.0010.295
hg17.genscan.LENGTH0.1130.0020.598
hg17.knownGene.LENGTH0.2150.0020.390
hg17.refGene.LENGTH0.1890.0030.418
hg17.sgpGene.LENGTH0.1380.0020.174
hg17.vegaGene.LENGTH0.0660.0010.079
hg17.vegaPseudoGene.LENGTH0.0280.0010.100
hg17.xenoRefGene.LENGTH0.4840.0060.519
hg18.acembly.LENGTH1.2480.0111.400
hg18.acescan.LENGTH0.0140.0010.043
hg18.ccdsGene.LENGTH0.0500.0010.052
hg18.ensGene.LENGTH0.3620.0020.471
hg18.exoniphy.LENGTH0.7750.0050.945
hg18.geneSymbol.LENGTH0.1910.0020.263
hg18.geneid.LENGTH0.1410.0020.289
hg18.genscan.LENGTH0.1710.0030.572
hg18.knownGene.LENGTH0.2560.0020.604
hg18.knownGeneOld3.LENGTH0.1080.0010.461
hg18.refGene.LENGTH0.1790.0020.365
hg18.sgpGene.LENGTH0.1410.0020.261
hg18.sibGene.LENGTH0.6850.0050.819
hg18.xenoRefGene.LENGTH0.6750.0060.750
hg19.ccdsGene.LENGTH0.1980.0020.935
hg19.ensGene.LENGTH0.6060.0030.692
hg19.exoniphy.LENGTH0.8430.0051.353
hg19.geneSymbol.LENGTH0.1890.0020.361
hg19.knownGene.LENGTH0.3230.0040.400
hg19.nscanGene.LENGTH0.2750.0040.384
hg19.refGene.LENGTH0.1900.0020.361
hg19.xenoRefGene.LENGTH0.8100.0101.021
loxAfr3.xenoRefGene.LENGTH1.3830.0091.607
mm7.ensGene.LENGTH0.1980.0020.434
mm7.geneSymbol.LENGTH0.1680.0020.245
mm7.geneid.LENGTH0.1520.0010.155
mm7.genscan.LENGTH0.1160.0020.118
mm7.knownGene.LENGTH0.2810.0030.287
mm7.refGene.LENGTH0.1630.0010.166
mm7.sgpGene.LENGTH0.1510.0020.154
mm7.xenoRefGene.LENGTH0.5770.0030.585
mm8.ccdsGene.LENGTH0.0260.0000.030
mm8.ensGene.LENGTH0.1360.0000.137
mm8.geneSymbol.LENGTH0.1440.0010.148
mm8.geneid.LENGTH0.1400.0020.144
mm8.genscan.LENGTH0.3240.0030.331
mm8.knownGene.LENGTH0.1670.0030.170
mm8.nscanGene.LENGTH0.1110.0010.113
mm8.refGene.LENGTH0.1610.0010.164
mm8.sgpGene.LENGTH0.1160.0010.120
mm8.sibGene.LENGTH0.4500.0030.492
mm8.xenoRefGene.LENGTH0.6790.0041.087
mm9.acembly.LENGTH0.7590.0051.677
mm9.ccdsGene.LENGTH0.0350.0010.268
mm9.ensGene.LENGTH0.2430.0020.823
mm9.exoniphy.LENGTH1.1180.0061.748
mm9.geneSymbol.LENGTH0.1360.0010.589
mm9.geneid.LENGTH0.1120.0010.595
mm9.genscan.LENGTH0.1110.0020.483
mm9.knownGene.LENGTH0.1670.0021.024
mm9.nscanGene.LENGTH0.1100.0010.457
mm9.refGene.LENGTH0.1020.0010.479
mm9.sgpGene.LENGTH0.1530.0020.554
mm9.xenoRefGene.LENGTH0.6150.0040.890
monDom1.genscan.LENGTH0.0790.0010.725
monDom4.ensGene.LENGTH0.1400.0020.761
monDom4.geneSymbol.LENGTH0.0070.0010.113
monDom4.genscan.LENGTH0.0550.0020.774
monDom4.nscanGene.LENGTH0.0840.0010.531
monDom4.refGene.LENGTH0.0050.0010.036
monDom4.xenoRefGene.LENGTH0.7280.0071.588
monDom5.ensGene.LENGTH0.2010.0010.878
monDom5.geneSymbol.LENGTH0.0050.0000.189
monDom5.genscan.LENGTH0.0640.0020.795
monDom5.nscanGene.LENGTH0.1570.0021.051
monDom5.refGene.LENGTH0.0050.0000.033
monDom5.xenoRefGene.LENGTH1.0470.0071.629
ornAna1.ensGene.LENGTH0.2650.0020.561
ornAna1.geneSymbol.LENGTH0.0030.0010.105
ornAna1.refGene.LENGTH0.0040.0010.030
ornAna1.xenoRefGene.LENGTH0.9990.0051.956
oryLat2.ensGene.LENGTH0.1370.0010.417
oryLat2.geneSymbol.LENGTH0.0060.0010.262
oryLat2.refGene.LENGTH0.1810.0020.231
oryLat2.xenoRefGene.LENGTH0.8340.0041.263
panTro1.ensGene.LENGTH0.1670.0020.223
panTro1.geneid.LENGTH0.0610.0010.642
panTro1.genscan.LENGTH0.0920.0020.963
panTro1.xenoRefGene.LENGTH0.1290.0020.752
panTro2.ensGene.LENGTH0.1610.0020.689
panTro2.geneSymbol.LENGTH0.1740.0020.578
panTro2.genscan.LENGTH0.0750.0021.428
panTro2.nscanGene.LENGTH0.0840.0030.857
panTro2.refGene.LENGTH0.1120.0021.095
panTro2.xenoRefGene.LENGTH0.8110.0071.847
petMar1.xenoRefGene.LENGTH0.4270.0030.997
ponAbe2.ensGene.LENGTH0.1610.0020.733
ponAbe2.geneSymbol.LENGTH0.0130.0010.491
ponAbe2.genscan.LENGTH0.0730.0010.574
ponAbe2.nscanGene.LENGTH0.0760.0010.170
ponAbe2.refGene.LENGTH0.0130.0010.309
ponAbe2.xenoRefGene.LENGTH1.1270.0061.337
priPac1.xenoRefGene.LENGTH0.7900.0041.482
rheMac2.ensGene.LENGTH0.1700.0020.203
rheMac2.geneSymbol.LENGTH0.0060.0000.054
rheMac2.geneid.LENGTH0.1090.0020.244
rheMac2.nscanGene.LENGTH0.0950.0020.136
rheMac2.refGene.LENGTH0.0060.0000.037
rheMac2.sgpGene.LENGTH0.1250.0020.128
rheMac2.xenoRefGene.LENGTH1.2320.0051.293
rn3.ensGene.LENGTH0.1960.0011.263
rn3.geneSymbol.LENGTH0.0550.0010.757
rn3.geneid.LENGTH0.0650.0010.411
rn3.genscan.LENGTH0.1160.0020.417
rn3.knownGene.LENGTH0.0400.0010.525
rn3.nscanGene.LENGTH0.1100.0010.611
rn3.refGene.LENGTH0.0750.0010.864
rn3.sgpGene.LENGTH0.1030.0020.409
rn3.xenoRefGene.LENGTH1.0210.0061.131
rn4.ensGene.LENGTH0.2600.0030.344
rn4.geneSymbol.LENGTH0.0930.0010.097
rn4.geneid.LENGTH0.1640.0020.310
rn4.genscan.LENGTH0.1100.0010.282
rn4.knownGene.LENGTH0.0420.0010.046
rn4.nscanGene.LENGTH0.0920.0010.264
rn4.refGene.LENGTH0.0840.0020.088
rn4.sgpGene.LENGTH0.1520.0020.226
rn4.xenoRefGene.LENGTH0.9730.0111.085
sacCer1.ensGene.LENGTH0.0320.0010.506
sacCer2.ensGene.LENGTH0.0300.0010.387
strPur1.geneSymbol.LENGTH0.0080.0010.187
strPur1.genscan.LENGTH0.0860.0030.535
strPur1.refGene.LENGTH0.0080.0010.050
strPur1.xenoRefGene.LENGTH0.9230.0071.035
strPur2.geneSymbol.LENGTH0.0050.0000.027
strPur2.genscan.LENGTH0.1720.0010.175
strPur2.refGene.LENGTH0.0060.0000.017
strPur2.xenoRefGene.LENGTH1.1650.0091.224
supportedGeneIDs0.0140.0010.061
supportedGenomes0.4910.0070.639
taeGut1.ensGene.LENGTH0.1280.0010.222
taeGut1.geneSymbol.LENGTH0.0050.0000.009
taeGut1.genscan.LENGTH0.0570.0020.099
taeGut1.nscanGene.LENGTH0.0460.0010.099
taeGut1.refGene.LENGTH0.0050.0010.013
taeGut1.xenoRefGene.LENGTH0.8280.0071.188
tetNig1.ensGene.LENGTH0.2150.0030.224
tetNig1.geneid.LENGTH0.1000.0020.103
tetNig1.genscan.LENGTH0.0830.0010.085
tetNig1.nscanGene.LENGTH0.1300.0010.134
tetNig2.ensGene.LENGTH0.1210.0040.127
unfactor0.0060.0010.007
xenTro1.genscan.LENGTH0.1450.0020.148
xenTro2.ensGene.LENGTH0.1490.0010.151
xenTro2.geneSymbol.LENGTH0.0580.0010.061
xenTro2.genscan.LENGTH0.1100.0010.114
xenTro2.refGene.LENGTH0.0530.0010.055