RMassBank at Eawag
| Snapshot Date: 2024-08-14 14:00 -0400 (Wed, 14 Aug 2024) |
| git_url: https://git.bioconductor.org/packages/RMassBank |
| git_branch: devel |
| git_last_commit: 8af9a1d |
| git_last_commit_date: 2024-05-02 11:25:23 -0400 (Thu, 02 May 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-08-15 11:45 -0400 (Thu, 15 Aug 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4703 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4440 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4472 |
| kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4420 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4413 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1742/2255 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| RMassBank 3.15.1 (landing page) RMassBank at Eawag
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | ERROR | ERROR | skipped | ||||||||||
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To the developers/maintainers of the RMassBank package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RMassBank.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: RMassBank |
| Version: 3.15.1 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data RMassBank |
| StartedAt: 2024-08-14 18:29:19 -0400 (Wed, 14 Aug 2024) |
| EndedAt: 2024-08-14 18:32:11 -0400 (Wed, 14 Aug 2024) |
| EllapsedTime: 171.8 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data RMassBank ### ############################################################################## ############################################################################## * checking for file ‘RMassBank/DESCRIPTION’ ... OK * preparing ‘RMassBank’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘RMassBank.Rmd’ using rmarkdown INFO [2024-08-14 18:29:45] Loaded compoundlist successfully INFO [2024-08-14 18:29:45] msmsWorkflow: Step 1. Acquire all MSMS spectra from files | | | 0% | |================================ | 50% | |================================================================| 100%INFO [2024-08-14 18:29:47] msmsWorkflow: Step 2. First analysis pre recalibration | | | 0% | |================================ | 50% | |================================================================| 100% INFO [2024-08-14 18:29:53] msmsWorkflow: Step 3. Aggregate all spectra INFO [2024-08-14 18:29:53] msmsWorkflow: Step 4. Recalibrate m/z values in raw spectra 2024-08-14 18:29:53.400 R[62003:177551176] XType: Using static font registry. INFO [2024-08-14 18:29:53] msmsWorkflow: Done. INFO [2024-08-14 18:30:12] msmsWorkflow: Step 4. Recalibrate m/z values in raw spectra INFO [2024-08-14 18:30:14] msmsWorkflow: Done. INFO [2024-08-14 18:30:14] msmsWorkflow: Step 4. Recalibrate m/z values in raw spectra INFO [2024-08-14 18:30:14] msmsWorkflow: Done. INFO [2024-08-14 18:30:14] msmsWorkflow: Step 5. Reanalyze recalibrated spectra | | | 0% | |================================ | 50% | |================================================================| 100% INFO [2024-08-14 18:30:20] msmsWorkflow: Step 6. Aggregate recalibrated results INFO [2024-08-14 18:30:20] msmsWorkflow: Step 7. Reanalyze fail peaks for N2 + O | | | 0% | |================================ | 50% | |================================================================| 100% INFO [2024-08-14 18:30:52] msmsWorkflow: Step 8. Peak multiplicity filtering INFO [2024-08-14 18:30:52] msmsWorkflow: Done. INFO [2024-08-14 18:30:52] mbWorkflow: Step 1. Gather info from several databases Quitting from lines 433-434 [unnamed-chunk-22] (RMassBank.Rmd) Error: processing vignette 'RMassBank.Rmd' failed with diagnostics: Opening and ending tag mismatch: META line 2 and HEAD [76] --- failed re-building ‘RMassBank.Rmd’ --- re-building ‘RMassBankNonstandard.Rmd’ using rmarkdown INFO [2024-08-14 18:31:53] msmsWorkflow: Step 4. Recalibrate m/z values in raw spectra INFO [2024-08-14 18:31:54] msmsWorkflow: Done. INFO [2024-08-14 18:31:55] Loaded compoundlist successfully INFO [2024-08-14 18:31:55] msmsWorkflow: Step 1. Acquire all MSMS spectra from files | | | 0% | |================================ | 50% | |================================================================| 100%INFO [2024-08-14 18:31:57] msmsWorkflow: Done. INFO [2024-08-14 18:31:57] msmsWorkflow: Step 2. First analysis pre recalibration | | | 0% | |================================ | 50% | |================================================================| 100% INFO [2024-08-14 18:31:58] msmsWorkflow: Step 3. Aggregate all spectra INFO [2024-08-14 18:31:58] msmsWorkflow: Step 4. Recalibrate m/z values in raw spectra INFO [2024-08-14 18:31:58] msmsWorkflow: Step 5. Reanalyze recalibrated spectra | | | 0% | |================================ | 50% | |================================================================| 100% INFO [2024-08-14 18:31:59] msmsWorkflow: Step 6. Aggregate recalibrated results INFO [2024-08-14 18:31:59] msmsWorkflow: Step 7. Reanalyze fail peaks for N2 + O | | | 0% | |================================ | 50% | |================================================================| 100% INFO [2024-08-14 18:32:02] msmsWorkflow: Done. INFO [2024-08-14 18:32:02] msmsWorkflow: Step 1. Acquire all MSMS spectra from files | | | 0% | |================================ | 50% | |================================================================| 100%INFO [2024-08-14 18:32:04] msmsWorkflow: Done. INFO [2024-08-14 18:32:04] msmsWorkflow: Step 2. First analysis pre recalibration | | | 0% | |================================ | 50% | |================================================================| 100% INFO [2024-08-14 18:32:05] msmsWorkflow: Step 3. Aggregate all spectra INFO [2024-08-14 18:32:05] msmsWorkflow: Step 4. Recalibrate m/z values in raw spectra INFO [2024-08-14 18:32:05] msmsWorkflow: Step 5. Reanalyze recalibrated spectra | | | 0% | |================================ | 50% | |================================================================| 100% INFO [2024-08-14 18:32:06] msmsWorkflow: Step 6. Aggregate recalibrated results INFO [2024-08-14 18:32:06] msmsWorkflow: Step 7. Reanalyze fail peaks for N2 + O | | | 0% | |================================ | 50% | |================================================================| 100% INFO [2024-08-14 18:32:09] msmsWorkflow: Done. INFO [2024-08-14 18:32:09] msmsWorkflow: Step 8. Peak multiplicity filtering INFO [2024-08-14 18:32:10] msmsWorkflow: Done. --- finished re-building ‘RMassBankNonstandard.Rmd’ SUMMARY: processing the following file failed: ‘RMassBank.Rmd’ Error: Vignette re-building failed. Execution halted