Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-06-28 11:38 -0400 (Fri, 28 Jun 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 RC (2024-04-16 r86468) -- "Puppy Cup" | 4693 |
palomino6 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4089 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 RC (2024-06-06 r86719) -- "Race for Your Life" | 4407 |
kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 RC (2024-06-06 r86719) -- "Race for Your Life" | 4356 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1732/2243 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
RMassBank 3.15.1 (landing page) RMassBank at Eawag
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
palomino6 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | see weekly results here | ||||||||||||
To the developers/maintainers of the RMassBank package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RMassBank.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: RMassBank |
Version: 3.15.1 |
Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 RMassBank |
StartedAt: 2024-06-27 19:24:21 -0400 (Thu, 27 Jun 2024) |
EndedAt: 2024-06-27 19:31:57 -0400 (Thu, 27 Jun 2024) |
EllapsedTime: 455.9 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 RMassBank ### ############################################################################## ############################################################################## * checking for file ‘RMassBank/DESCRIPTION’ ... OK * preparing ‘RMassBank’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘RMassBank.Rmd’ using rmarkdown INFO [2024-06-27 19:25:23] Loaded compoundlist successfully INFO [2024-06-27 19:25:23] msmsWorkflow: Step 1. Acquire all MSMS spectra from files | | | 0% | |================================ | 50% | |================================================================| 100%INFO [2024-06-27 19:25:29] msmsWorkflow: Step 2. First analysis pre recalibration | | | 0% | |================================ | 50% | |================================================================| 100% INFO [2024-06-27 19:25:48] msmsWorkflow: Step 3. Aggregate all spectra INFO [2024-06-27 19:25:48] msmsWorkflow: Step 4. Recalibrate m/z values in raw spectra INFO [2024-06-27 19:25:49] msmsWorkflow: Done. INFO [2024-06-27 19:26:51] msmsWorkflow: Step 4. Recalibrate m/z values in raw spectra INFO [2024-06-27 19:26:57] msmsWorkflow: Done. INFO [2024-06-27 19:26:57] msmsWorkflow: Step 4. Recalibrate m/z values in raw spectra INFO [2024-06-27 19:26:57] msmsWorkflow: Done. INFO [2024-06-27 19:26:58] msmsWorkflow: Step 5. Reanalyze recalibrated spectra | | | 0% | |================================ | 50% | |================================================================| 100% INFO [2024-06-27 19:27:16] msmsWorkflow: Step 6. Aggregate recalibrated results INFO [2024-06-27 19:27:16] msmsWorkflow: Step 7. Reanalyze fail peaks for N2 + O | | | 0% | |================================ | 50% | |================================================================| 100% INFO [2024-06-27 19:28:57] msmsWorkflow: Step 8. Peak multiplicity filtering INFO [2024-06-27 19:28:58] msmsWorkflow: Done. INFO [2024-06-27 19:28:58] mbWorkflow: Step 1. Gather info from several databases Quitting from lines 433-434 [unnamed-chunk-22] (RMassBank.Rmd) Error: processing vignette 'RMassBank.Rmd' failed with diagnostics: non-character argument --- failed re-building ‘RMassBank.Rmd’ --- re-building ‘RMassBankNonstandard.Rmd’ using rmarkdown INFO [2024-06-27 19:31:06] msmsWorkflow: Step 4. Recalibrate m/z values in raw spectra INFO [2024-06-27 19:31:10] msmsWorkflow: Done. INFO [2024-06-27 19:31:13] Loaded compoundlist successfully INFO [2024-06-27 19:31:13] msmsWorkflow: Step 1. Acquire all MSMS spectra from files | | | 0% | |================================ | 50% | |================================================================| 100%INFO [2024-06-27 19:31:18] msmsWorkflow: Done. INFO [2024-06-27 19:31:18] msmsWorkflow: Step 2. First analysis pre recalibration | | | 0% | |================================ | 50% | |================================================================| 100% INFO [2024-06-27 19:31:20] msmsWorkflow: Step 3. Aggregate all spectra INFO [2024-06-27 19:31:20] msmsWorkflow: Step 4. Recalibrate m/z values in raw spectra INFO [2024-06-27 19:31:21] msmsWorkflow: Step 5. Reanalyze recalibrated spectra | | | 0% | |================================ | 50% | |================================================================| 100% INFO [2024-06-27 19:31:22] msmsWorkflow: Step 6. Aggregate recalibrated results INFO [2024-06-27 19:31:22] msmsWorkflow: Step 7. Reanalyze fail peaks for N2 + O | | | 0% | |================================ | 50% | |================================================================| 100% INFO [2024-06-27 19:31:33] msmsWorkflow: Done. INFO [2024-06-27 19:31:33] msmsWorkflow: Step 1. Acquire all MSMS spectra from files | | | 0% | |================================ | 50% | |================================================================| 100%INFO [2024-06-27 19:31:40] msmsWorkflow: Done. INFO [2024-06-27 19:31:40] msmsWorkflow: Step 2. First analysis pre recalibration | | | 0% | |================================ | 50% | |================================================================| 100% INFO [2024-06-27 19:31:41] msmsWorkflow: Step 3. Aggregate all spectra INFO [2024-06-27 19:31:41] msmsWorkflow: Step 4. Recalibrate m/z values in raw spectra INFO [2024-06-27 19:31:42] msmsWorkflow: Step 5. Reanalyze recalibrated spectra | | | 0% | |================================ | 50% | |================================================================| 100% INFO [2024-06-27 19:31:44] msmsWorkflow: Step 6. Aggregate recalibrated results INFO [2024-06-27 19:31:44] msmsWorkflow: Step 7. Reanalyze fail peaks for N2 + O | | | 0% | |================================ | 50% | |================================================================| 100% INFO [2024-06-27 19:31:54] msmsWorkflow: Done. INFO [2024-06-27 19:31:55] msmsWorkflow: Step 8. Peak multiplicity filtering INFO [2024-06-27 19:31:55] msmsWorkflow: Done. --- finished re-building ‘RMassBankNonstandard.Rmd’ SUMMARY: processing the following file failed: ‘RMassBank.Rmd’ Error: Vignette re-building failed. Execution halted