Multiple platform build/check report for BioC 3.19 - CHECK results for graper on nebbiolo1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 22.04.3 LTS)	x86_64	4.4.1 (2024-06-14) -- "Race for Your Life"	4763
merida1	macOS 12.7.5 Monterey	x86_64	4.4.1 (2024-06-14) -- "Race for Your Life"	4529
kjohnson1	macOS 13.6.6 Ventura	arm64	4.4.1 (2024-06-14) -- "Race for Your Life"	4479
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

CHECK results for graper on nebbiolo1

To the developers/maintainers of the graper package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/graper.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: graper

Version: 1.20.0

Command: /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:graper.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings graper_1.20.0.tar.gz

StartedAt: 2024-10-14 00:36:06 -0400 (Mon, 14 Oct 2024)

EndedAt: 2024-10-14 00:37:29 -0400 (Mon, 14 Oct 2024)

EllapsedTime: 83.2 seconds

RetCode: 0

Status: OK

CheckDir: graper.Rcheck

Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:graper.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings graper_1.20.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.19-bioc/meat/graper.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
    GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.5 LTS
* using session charset: UTF-8
* checking for file ‘graper/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘graper’ version ‘1.20.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘graper’ can be installed ... OK
* used C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
* checking C++ specification ... NOTE
  Specified C++11: please drop specification unless essential
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) predict.graper.Rd:19-21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:23-24: Lost braces in \itemize; meant \describe ?
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.19-bioc/meat/graper.Rcheck/00check.log’
for details.

Installation output

graper.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD INSTALL graper
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.19-bioc/R/site-library’
* installing *source* package ‘graper’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
using C++11
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/BH/include' -I/usr/local/include    -fpic  -g -O2  -Wall  -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/BH/include' -I/usr/local/include    -fpic  -g -O2  -Wall  -c fit_graper.cpp -o fit_graper.o
In file included from /home/biocbuild/bbs-3.19-bioc/R/site-library/BH/include/boost/math/special_functions/detail/round_fwd.hpp:11,
                 from /home/biocbuild/bbs-3.19-bioc/R/site-library/BH/include/boost/math/special_functions/math_fwd.hpp:29,
                 from /home/biocbuild/bbs-3.19-bioc/R/site-library/BH/include/boost/math/special_functions/digamma.hpp:15,
                 from graper_linear_dense_ff.h:2,
                 from fit_graper.cpp:4:
/home/biocbuild/bbs-3.19-bioc/R/site-library/BH/include/boost/math/tools/config.hpp:23:6: warning: #warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-Wcpp]
   23 | #    warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)"
      |      ^~~~~~~
g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.19-bioc/R/lib -L/usr/local/lib -o graper.so RcppExports.o fit_graper.o -llapack -L/home/biocbuild/bbs-3.19-bioc/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/biocbuild/bbs-3.19-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.19-bioc/R/site-library/00LOCK-graper/00new/graper/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (graper)

Tests output

graper.Rcheck/tests/testthat.Rout


R version 4.4.1 (2024-06-14) -- "Race for Your Life"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(graper)
> 
> test_check("graper")
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-894.299
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-594.967
ELB improved by 299.333

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-531.16
ELB improved by 63.8068

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-488.841
ELB improved by 42.3189

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-469.637
ELB improved by 19.2043

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-461.767
ELB improved by 7.86981

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-457.692
ELB improved by 4.07499

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-454.808
ELB improved by 2.88383

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-452.371
ELB improved by 2.43684

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-450.151
ELB improved by 2.22047

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-448.049
ELB improved by 2.10158

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-446.019
ELB improved by 2.03013

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.04
ELB improved by 1.97906

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.121
ELB improved by 1.91902

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.306
ELB improved by 1.81504

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.662
ELB improved by 1.64334

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.254
ELB improved by 1.40819

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.118
ELB improved by 1.13616

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.258
ELB improved by 0.85991

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.644
ELB improved by 0.614563

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.216
ELB improved by 0.427336

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.914
ELB improved by 0.302067

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.69
ELB improved by 0.224529

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.512
ELB improved by 0.177415

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.364
ELB improved by 0.147999

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.236
ELB improved by 0.128643

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.121
ELB improved by 0.115125

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.015
ELB improved by 0.105152

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.918
ELB improved by 0.0974584

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.827
ELB improved by 0.0913212

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.74
ELB improved by 0.0863072

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.658
ELB improved by 0.0821424

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.579
ELB improved by 0.0786427

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.504
ELB improved by 0.0756781

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.431
ELB improved by 0.073152

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.36
ELB improved by 0.0709902

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.291
ELB improved by 0.0691344

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.223
ELB improved by 0.0675382

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.157
ELB improved by 0.0661653

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.092
ELB improved by 0.0649879

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.028
ELB improved by 0.0639861

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.965
ELB improved by 0.0631481

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.902
ELB improved by 0.0624703

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.84
ELB improved by 0.061958

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.779
ELB improved by 0.0616266

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.717
ELB improved by 0.0615038

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.656
ELB improved by 0.0616312

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.593
ELB improved by 0.0620676

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.531
ELB improved by 0.0628921

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.466
ELB improved by 0.0642054

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.4
ELB improved by 0.0661286

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.331
ELB improved by 0.0687907

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.259
ELB improved by 0.0722975

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.182
ELB improved by 0.076669

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.101
ELB improved by 0.0817455

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.014
ELB improved by 0.0870964

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.922
ELB improved by 0.092023

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.826
ELB improved by 0.0957431

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.728
ELB improved by 0.0977058

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.63
ELB improved by 0.0978109

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.534
ELB improved by 0.0963653

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.44
ELB improved by 0.0938615

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.349
ELB improved by 0.0907727

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.262
ELB improved by 0.0874458

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.178
ELB improved by 0.0840738

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.097
ELB improved by 0.0807163

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.02
ELB improved by 0.0773507

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.946
ELB improved by 0.0739358

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.875
ELB improved by 0.070464

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.808
ELB improved by 0.0669818

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.745
ELB improved by 0.0635789

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.684
ELB improved by 0.060363

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.627
ELB improved by 0.0574385

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.572
ELB improved by 0.054899

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.519
ELB improved by 0.052833

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.468
ELB improved by 0.0513387

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.417
ELB improved by 0.0505461

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.367
ELB improved by 0.0506473

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.315
ELB improved by 0.0519373

iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.26
ELB improved by 0.0548633

iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.2
ELB improved by 0.0600602

iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.132
ELB improved by 0.0682895

iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.051
ELB improved by 0.080097

iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.956
ELB improved by 0.0949991

iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.846
ELB improved by 0.110612

iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.723
ELB improved by 0.123289

iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.592
ELB improved by 0.130882

iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.457
ELB improved by 0.134452

iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.32
ELB improved by 0.136819

iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.18
ELB improved by 0.140849

iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.03
ELB improved by 0.14963

iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.862
ELB improved by 0.167598

iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.662
ELB improved by 0.199995

iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.419
ELB improved by 0.243834

iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.146
ELB improved by 0.272328

iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.887
ELB improved by 0.259656

iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.662
ELB improved by 0.224214

iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.468
ELB improved by 0.194492

iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.286
ELB improved by 0.181511

iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.094
ELB improved by 0.192603

iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.847
ELB improved by 0.246323

iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.47
ELB improved by 0.376943

iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.886
ELB improved by 0.584133

iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.174
ELB improved by 0.712601

iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.582
ELB improved by 0.591815

iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.198
ELB improved by 0.383756

iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.962
ELB improved by 0.236505

iteration 108
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.813
ELB improved by 0.149015

iteration 109
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.714
ELB improved by 0.098174

iteration 110
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.646
ELB improved by 0.068365

iteration 111
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.595
ELB improved by 0.0506124

iteration 112
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.556
ELB improved by 0.0399011

iteration 113
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.522
ELB improved by 0.033406

iteration 114
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.493
ELB improved by 0.0295099

iteration 115
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.465
ELB improved by 0.0272737

iteration 116
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.439
ELB improved by 0.026142

iteration 117
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.413
ELB improved by 0.0257732

iteration 118
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.388
ELB improved by 0.0259394

iteration 119
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.361
ELB improved by 0.0264698

iteration 120
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.334
ELB improved by 0.0272232

iteration 121
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.306
ELB improved by 0.0280809

iteration 122
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.277
ELB improved by 0.0289537

iteration 123
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.247
ELB improved by 0.0297939

iteration 124
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.216
ELB improved by 0.0306019

iteration 125
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.185
ELB improved by 0.0314183

iteration 126
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.153
ELB improved by 0.0322972

iteration 127
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.119
ELB improved by 0.0332633

iteration 128
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.085
ELB improved by 0.0342643

iteration 129
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.05
ELB improved by 0.0351369

iteration 130
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.014
ELB improved by 0.0356154

iteration 131
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.979
ELB improved by 0.0354023

iteration 132
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.945
ELB improved by 0.0342878

iteration 133
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.912
ELB improved by 0.0322535

iteration 134
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.883
ELB improved by 0.0294895

iteration 135
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.857
ELB improved by 0.0263139

iteration 136
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.834
ELB improved by 0.0230547

iteration 137
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.814
ELB improved by 0.0199655

iteration 138
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.796
ELB improved by 0.0171969

iteration 139
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.782
ELB improved by 0.0148094

iteration 140
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.769
ELB improved by 0.0128023

iteration 141
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.758
ELB improved by 0.011141

iteration 142
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.748
ELB improved by 0.00977684

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-863.205
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-564.261
ELB improved by 298.944

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-502.243
ELB improved by 62.0173

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-463.207
ELB improved by 39.0361

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-447.69
ELB improved by 15.5175

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.101
ELB improved by 6.58899

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.602
ELB improved by 4.49846

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.518
ELB improved by 4.08448

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.372
ELB improved by 4.14613

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.971
ELB improved by 4.40032

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.247
ELB improved by 4.7241

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.329
ELB improved by 4.91851

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.67
ELB improved by 4.65916

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.878
ELB improved by 3.79132

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.203
ELB improved by 2.67517

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.394
ELB improved by 1.80907

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.073
ELB improved by 1.32077

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.996
ELB improved by 1.07774

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.052
ELB improved by 0.94349

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.236
ELB improved by 0.816211

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.583
ELB improved by 0.652804

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.095
ELB improved by 0.488156

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.732
ELB improved by 0.362923

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.445
ELB improved by 0.286549

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.2
ELB improved by 0.245593

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.974
ELB improved by 0.225686

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.755
ELB improved by 0.218798

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.534
ELB improved by 0.22152

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.301
ELB improved by 0.232812

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.048
ELB improved by 0.252849

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.766
ELB improved by 0.282538

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.442
ELB improved by 0.323311

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.065
ELB improved by 0.376962

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.62
ELB improved by 0.445464

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.089
ELB improved by 0.530719

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.455
ELB improved by 0.634175

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.699
ELB improved by 0.756011

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.806
ELB improved by 0.892898

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.773
ELB improved by 1.03268

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.626
ELB improved by 1.14698

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.434
ELB improved by 1.19227

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.302
ELB improved by 1.13174

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.336
ELB improved by 0.966294

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.59
ELB improved by 0.746644

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.05
ELB improved by 0.539694

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.669
ELB improved by 0.380621

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.399
ELB improved by 0.270177

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.203
ELB improved by 0.195735

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.059
ELB improved by 0.144576

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.951
ELB improved by 0.107972

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.87
ELB improved by 0.081026

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.809
ELB improved by 0.0611532

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.762
ELB improved by 0.0467068

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.726
ELB improved by 0.0363479

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.697
ELB improved by 0.0289428

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.673
ELB improved by 0.0236026

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.653
ELB improved by 0.0196836

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.637
ELB improved by 0.0167439

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.622
ELB improved by 0.014487

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.609
ELB improved by 0.0127148

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.598
ELB improved by 0.0112938

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.588
ELB improved by 0.0101326

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.579
ELB improved by 0.00916759

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-865.645
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-561.604
ELB improved by 304.041

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-500.894
ELB improved by 60.7106

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-463.901
ELB improved by 36.993

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-449.756
ELB improved by 14.1445

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.582
ELB improved by 5.17444

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.803
ELB improved by 2.77917

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.908
ELB improved by 1.89481

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.391
ELB improved by 1.51666

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.01
ELB improved by 1.3813

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.628
ELB improved by 1.38199

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.158
ELB improved by 1.47013

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.535
ELB improved by 1.62319

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.707
ELB improved by 1.82769

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.641
ELB improved by 2.06562

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.34
ELB improved by 2.30165

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.864
ELB improved by 2.47601

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.349
ELB improved by 2.51461

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.993
ELB improved by 2.35618

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.001
ELB improved by 1.992

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.474
ELB improved by 1.52677

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.349
ELB improved by 1.12509

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.484
ELB improved by 0.865247

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.749
ELB improved by 0.735073

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.05
ELB improved by 0.699053

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.321
ELB improved by 0.728213

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.527
ELB improved by 0.794166

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.666
ELB improved by 0.861548

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.753
ELB improved by 0.912967

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.796
ELB improved by 0.956419

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.808
ELB improved by 0.988498

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.815
ELB improved by 0.992786

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.851
ELB improved by 0.964297

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.932
ELB improved by 0.918397

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.059
ELB improved by 0.873583

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.22
ELB improved by 0.839048

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.408
ELB improved by 0.811797

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.631
ELB improved by 0.776721

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.907
ELB improved by 0.724174

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.239
ELB improved by 0.667972

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.604
ELB improved by 0.635075

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.946
ELB improved by 0.657457

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.212
ELB improved by 0.734121

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.497
ELB improved by 0.715357

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.955
ELB improved by 0.542142

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.578
ELB improved by 0.376622

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.312
ELB improved by 0.26619

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.119
ELB improved by 0.193376

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.975
ELB improved by 0.144088

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.865
ELB improved by 0.110039

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.779
ELB improved by 0.0860552

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.71
ELB improved by 0.068797

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.654
ELB improved by 0.0560916

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.607
ELB improved by 0.0465235

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.568
ELB improved by 0.0391654

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.535
ELB improved by 0.0334024

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.506
ELB improved by 0.0288188

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.481
ELB improved by 0.0251272

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.458
ELB improved by 0.0221238

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.439
ELB improved by 0.0196607

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.421
ELB improved by 0.0176277

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.405
ELB improved by 0.0159414

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.391
ELB improved by 0.0145372

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.377
ELB improved by 0.0133644

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.365
ELB improved by 0.0123824

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.353
ELB improved by 0.0115586

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.343
ELB improved by 0.0108661

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.332
ELB improved by 0.0102828

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.322
ELB improved by 0.00979013

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-879.203
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-603.094
ELB improved by 276.109

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-541.081
ELB improved by 62.0132

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-493.213
ELB improved by 47.8678

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-469.664
ELB improved by 23.5496

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-459.867
ELB improved by 9.79609

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-454.019
ELB improved by 5.84808

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-448.882
ELB improved by 5.13744

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.487
ELB improved by 5.3945

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.665
ELB improved by 5.82272

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.772
ELB improved by 5.89234

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.491
ELB improved by 5.28188

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.391
ELB improved by 4.09996

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.592
ELB improved by 2.79875

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.768
ELB improved by 1.82375

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.517
ELB improved by 1.25129

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.568
ELB improved by 0.948411

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.78
ELB improved by 0.787936

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.084
ELB improved by 0.696343

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.447
ELB improved by 0.636745

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.856
ELB improved by 0.591091

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.305
ELB improved by 0.55079

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.793
ELB improved by 0.512288

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.318
ELB improved by 0.474822

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.879
ELB improved by 0.439116

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.473
ELB improved by 0.406611

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.094
ELB improved by 0.379066

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.735
ELB improved by 0.358294

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.39
ELB improved by 0.345376

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.051
ELB improved by 0.338376

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.722
ELB improved by 0.329771

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.411
ELB improved by 0.310692

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.129
ELB improved by 0.281765

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.877
ELB improved by 0.251885

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.65
ELB improved by 0.227235

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.441
ELB improved by 0.209439

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.241
ELB improved by 0.199841

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.038
ELB improved by 0.203165

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.806
ELB improved by 0.231801

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.498
ELB improved by 0.308376

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.057
ELB improved by 0.440661

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.469
ELB improved by 0.588359

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.75
ELB improved by 0.718793

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.028
ELB improved by 0.721695

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.381
ELB improved by 0.647111

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.67
ELB improved by 0.710897

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.785
ELB improved by 0.884983

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.001
ELB improved by 0.784

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.478
ELB improved by 0.523106

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.13
ELB improved by 0.347781

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.882
ELB improved by 0.247719

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.696
ELB improved by 0.186629

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.55
ELB improved by 0.145422

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.435
ELB improved by 0.115347

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.343
ELB improved by 0.0923856

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.268
ELB improved by 0.0745215

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.208
ELB improved by 0.0605504

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.158
ELB improved by 0.0496172

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.117
ELB improved by 0.0410544

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.083
ELB improved by 0.0343289

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.054
ELB improved by 0.029019

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.029
ELB improved by 0.0247963

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.007
ELB improved by 0.0214091

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.989
ELB improved by 0.0186665

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.972
ELB improved by 0.0164247

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.958
ELB improved by 0.0145752

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.945
ELB improved by 0.0130359

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.933
ELB improved by 0.0117445

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.922
ELB improved by 0.010653

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.913
ELB improved by 0.00972434

ELB converged
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 24 ]
> 
> proc.time()
   user  system elapsed 
  2.093   0.150   2.232

Example timings

graper.Rcheck/graper-Ex.timings

name	user	system	elapsed
coef.graper	0.052	0.016	0.068
getPIPs	0.054	0.008	0.062
graper	0.080	0.028	0.107
makeExampleData	0.011	0.000	0.011
makeExampleDataWithUnequalGroups	0.009	0.004	0.013
plotELBO	0.224	0.028	0.252
plotGroupPenalties	0.745	0.012	0.758
plotPosterior	0.630	0.048	0.678
predict.graper	2.091	0.040	2.131
print.graper	0.053	0.012	0.065