Multiple platform build/check report for BioC 3.19 - CHECK results for graper on kjohnson1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 22.04.3 LTS)	x86_64	4.4.1 (2024-06-14) -- "Race for Your Life"	4758
palomino7	Windows Server 2022 Datacenter	x64	4.4.1 (2024-06-14 ucrt) -- "Race for Your Life"	4495
kjohnson1	macOS 13.6.6 Ventura	arm64	4.4.1 (2024-06-14) -- "Race for Your Life"	4473
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

CHECK results for graper on kjohnson1

To the developers/maintainers of the graper package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/graper.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: graper

Version: 1.20.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:graper.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings graper_1.20.0.tar.gz

StartedAt: 2024-09-02 22:15:39 -0400 (Mon, 02 Sep 2024)

EndedAt: 2024-09-02 22:16:51 -0400 (Mon, 02 Sep 2024)

EllapsedTime: 71.1 seconds

RetCode: 0

Status: WARNINGS

CheckDir: graper.Rcheck

Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:graper.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings graper_1.20.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.19-bioc/meat/graper.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: aarch64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Ventura 13.6.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘graper/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘graper’ version ‘1.20.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘graper’ can be installed ... WARNING
Found the following significant warnings:
  /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/BH/include/boost/math/tools/config.hpp:23:6: warning: "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-W#warnings]
  #    warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)"
See ‘/Users/biocbuild/bbs-3.19-bioc/meat/graper.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.0.40.1)’
* used SDK: ‘MacOSX11.3.sdk’
* checking C++ specification ... NOTE
  Specified C++11: please drop specification unless essential
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) predict.graper.Rd:19-21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:23-24: Lost braces in \itemize; meant \describe ?
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 3 NOTEs
See
  ‘/Users/biocbuild/bbs-3.19-bioc/meat/graper.Rcheck/00check.log’
for details.

Installation output

graper.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL graper
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’
* installing *source* package ‘graper’ ...
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.0.40.1)’
using C++11
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/BH/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/BH/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c fit_graper.cpp -o fit_graper.o
In file included from fit_graper.cpp:4:
In file included from ./graper_linear_dense_ff.h:2:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/BH/include/boost/math/special_functions/digamma.hpp:15:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/BH/include/boost/math/special_functions/math_fwd.hpp:29:
In file included from /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/BH/include/boost/math/special_functions/detail/round_fwd.hpp:11:
/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/BH/include/boost/math/tools/config.hpp:23:6: warning: "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-W#warnings]
#    warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)"
     ^
1 warning generated.
clang++ -arch arm64 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o graper.so RcppExports.o fit_graper.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lemutls_w -lquadmath -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/00LOCK-graper/00new/graper/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (graper)

Tests output

graper.Rcheck/tests/testthat.Rout


R version 4.4.1 (2024-06-14) -- "Race for Your Life"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(graper)
> 
> test_check("graper")
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-929.834
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-580.056
ELB improved by 349.778

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-526.709
ELB improved by 53.3467

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-495.415
ELB improved by 31.2938

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-480.18
ELB improved by 15.2347

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-472.529
ELB improved by 7.65177

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-466.964
ELB improved by 5.56498

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-461.951
ELB improved by 5.01218

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-457.132
ELB improved by 4.8191

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-452.642
ELB improved by 4.4902

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-448.825
ELB improved by 3.81749

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-445.951
ELB improved by 2.87385

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.001
ELB improved by 1.9495

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.742
ELB improved by 1.25899

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.923
ELB improved by 0.819127

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.367
ELB improved by 0.556152

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.968
ELB improved by 0.398847

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.666
ELB improved by 0.301756

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.427
ELB improved by 0.239245

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.23
ELB improved by 0.197073

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.063
ELB improved by 0.167214

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.918
ELB improved by 0.145083

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.79
ELB improved by 0.128009

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.675
ELB improved by 0.114399

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.572
ELB improved by 0.10326

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.478
ELB improved by 0.0939554

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.392
ELB improved by 0.0860535

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.313
ELB improved by 0.079254

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.24
ELB improved by 0.0733393

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.171
ELB improved by 0.0681471

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.108
ELB improved by 0.063553

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.048
ELB improved by 0.0594595

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.993
ELB improved by 0.0557888

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.94
ELB improved by 0.0524776

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.891
ELB improved by 0.049474

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.844
ELB improved by 0.0467348

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.8
ELB improved by 0.0442237

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.758
ELB improved by 0.0419102

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.718
ELB improved by 0.0397683

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.68
ELB improved by 0.0377759

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.644
ELB improved by 0.0359145

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.61
ELB improved by 0.0341679

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.578
ELB improved by 0.0325228

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.547
ELB improved by 0.0309678

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.517
ELB improved by 0.0294932

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.489
ELB improved by 0.0280911

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.462
ELB improved by 0.026755

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.437
ELB improved by 0.0254795

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.413
ELB improved by 0.0242602

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.39
ELB improved by 0.0230937

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.368
ELB improved by 0.0219771

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.347
ELB improved by 0.0209081

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.327
ELB improved by 0.019885

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.308
ELB improved by 0.0189062

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.29
ELB improved by 0.0179705

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.273
ELB improved by 0.0170768

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.257
ELB improved by 0.0162241

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.241
ELB improved by 0.0154115

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.227
ELB improved by 0.0146378

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.213
ELB improved by 0.0139022

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.199
ELB improved by 0.0132035

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.187
ELB improved by 0.0125407

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.175
ELB improved by 0.0119127

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.164
ELB improved by 0.0113181

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.153
ELB improved by 0.0107557

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.143
ELB improved by 0.0102243

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.133
ELB improved by 0.00972254

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-877.111
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-561.229
ELB improved by 315.882

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-499.01
ELB improved by 62.2189

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-463.544
ELB improved by 35.4654

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-448.447
ELB improved by 15.0969

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.789
ELB improved by 6.65815

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.917
ELB improved by 3.87195

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.965
ELB improved by 2.95238

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.349
ELB improved by 2.61565

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.88
ELB improved by 2.46916

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.496
ELB improved by 2.38436

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.196
ELB improved by 2.29956

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.025
ELB improved by 2.17112

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.05
ELB improved by 1.97511

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.332
ELB improved by 1.71797

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.904
ELB improved by 1.42762

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.775
ELB improved by 1.12937

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.926
ELB improved by 0.849045

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.305
ELB improved by 0.620919

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.844
ELB improved by 0.460839

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.485
ELB improved by 0.359166

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.187
ELB improved by 0.297608

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.927
ELB improved by 0.260485

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.689
ELB improved by 0.237667

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.465
ELB improved by 0.223731

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.25
ELB improved by 0.215861

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.037
ELB improved by 0.212157

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.826
ELB improved by 0.211031

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.615
ELB improved by 0.211223

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.403
ELB improved by 0.211862

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.191
ELB improved by 0.21243

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.978
ELB improved by 0.212688

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.766
ELB improved by 0.212587

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.553
ELB improved by 0.212203

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.342
ELB improved by 0.211691

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.13
ELB improved by 0.211235

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.919
ELB improved by 0.211019

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.708
ELB improved by 0.211197

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.496
ELB improved by 0.211881

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.283
ELB improved by 0.213118

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.068
ELB improved by 0.214879

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.851
ELB improved by 0.217048

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.632
ELB improved by 0.21941

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.41
ELB improved by 0.221644

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.187
ELB improved by 0.223331

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.963
ELB improved by 0.223976

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.74
ELB improved by 0.223069

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.52
ELB improved by 0.220158

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.305
ELB improved by 0.214954

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.097
ELB improved by 0.207422

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.9
ELB improved by 0.197839

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.713
ELB improved by 0.186794

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.538
ELB improved by 0.175118

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.374
ELB improved by 0.163753

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.22
ELB improved by 0.153577

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.075
ELB improved by 0.145178

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.937
ELB improved by 0.138604

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.803
ELB improved by 0.133222

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.675
ELB improved by 0.128092

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.552
ELB improved by 0.123394

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.429
ELB improved by 0.122871

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.293
ELB improved by 0.136158

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.116
ELB improved by 0.176511

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.88
ELB improved by 0.236317

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.622
ELB improved by 0.257454

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.41
ELB improved by 0.21201

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.262
ELB improved by 0.148077

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.163
ELB improved by 0.0989639

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.096
ELB improved by 0.067368

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.048
ELB improved by 0.048112

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.011
ELB improved by 0.0364822

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.982
ELB improved by 0.0293568

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.957
ELB improved by 0.0248738

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.935
ELB improved by 0.0219829

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.915
ELB improved by 0.0201164

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.896
ELB improved by 0.0189853

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.878
ELB improved by 0.018469

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.859
ELB improved by 0.0185636

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.84
ELB improved by 0.0193696

iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.819
ELB improved by 0.0211072

iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.794
ELB improved by 0.0241497

iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.765
ELB improved by 0.029049

iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.729
ELB improved by 0.036473

iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.682
ELB improved by 0.0468899

iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.622
ELB improved by 0.0598982

iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.548
ELB improved by 0.0737965

iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.462
ELB improved by 0.086836

iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.362
ELB improved by 0.0995314

iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.248
ELB improved by 0.113662

iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.121
ELB improved by 0.127421

iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.987
ELB improved by 0.134083

iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.857
ELB improved by 0.129463

iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.739
ELB improved by 0.118424

iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.63
ELB improved by 0.109289

iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.523
ELB improved by 0.106213

iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.415
ELB improved by 0.108228

iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.304
ELB improved by 0.110821

iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.196
ELB improved by 0.108019

iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.1
ELB improved by 0.0962155

iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.023
ELB improved by 0.0773456

iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.966
ELB improved by 0.0570095

iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.926
ELB improved by 0.0397897

iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.899
ELB improved by 0.0272476

iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.88
ELB improved by 0.0188903

iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.866
ELB improved by 0.0135789

iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.856
ELB improved by 0.0102657

iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.848
ELB improved by 0.00819272

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-814.053
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-552.018
ELB improved by 262.035

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-491.778
ELB improved by 60.2396

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-453.81
ELB improved by 37.9682

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.802
ELB improved by 16.0081

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.264
ELB improved by 6.53764

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.546
ELB improved by 3.71842

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.604
ELB improved by 2.94158

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.85
ELB improved by 2.75372

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.051
ELB improved by 2.7995

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.088
ELB improved by 2.96288

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.912
ELB improved by 3.17541

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.557
ELB improved by 3.35534

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.195
ELB improved by 3.36197

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.154
ELB improved by 3.04131

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.753
ELB improved by 2.40064

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.084
ELB improved by 1.66911

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398
ELB improved by 1.08389

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.291
ELB improved by 0.709158

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.799
ELB improved by 0.49226

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.431
ELB improved by 0.368119

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.136
ELB improved by 0.294221

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.889
ELB improved by 0.247572

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.673
ELB improved by 0.216352

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.478
ELB improved by 0.194432

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.3
ELB improved by 0.178505

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.133
ELB improved by 0.1667

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.975
ELB improved by 0.157895

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.824
ELB improved by 0.151381

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.677
ELB improved by 0.146687

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.533
ELB improved by 0.143483

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.392
ELB improved by 0.14153

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.251
ELB improved by 0.140651

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.111
ELB improved by 0.140711

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.969
ELB improved by 0.141605

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.826
ELB improved by 0.143256

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.68
ELB improved by 0.145604

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.531
ELB improved by 0.14861

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.379
ELB improved by 0.152245

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.223
ELB improved by 0.156488

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.061
ELB improved by 0.161323

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.895
ELB improved by 0.166723

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.722
ELB improved by 0.17264

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.543
ELB improved by 0.178993

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.357
ELB improved by 0.185644

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.165
ELB improved by 0.192398

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.966
ELB improved by 0.198996

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.761
ELB improved by 0.205137

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.55
ELB improved by 0.210506

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.336
ELB improved by 0.214808

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.118
ELB improved by 0.217779

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.899
ELB improved by 0.219186

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.68
ELB improved by 0.218797

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.463
ELB improved by 0.216376

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.252
ELB improved by 0.211689

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.047
ELB improved by 0.204553

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.852
ELB improved by 0.1949

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.669
ELB improved by 0.182847

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.501
ELB improved by 0.168734

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.348
ELB improved by 0.153112

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.211
ELB improved by 0.136674

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.091
ELB improved by 0.120161

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.987
ELB improved by 0.104248

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.897
ELB improved by 0.0894672

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.821
ELB improved by 0.0761654

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.756
ELB improved by 0.0645073

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.702
ELB improved by 0.054505

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.656
ELB improved by 0.046062

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.617
ELB improved by 0.0390167

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.584
ELB improved by 0.0331786

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.555
ELB improved by 0.0283543

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.531
ELB improved by 0.0243639

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.51
ELB improved by 0.0210496

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.492
ELB improved by 0.0182793

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.476
ELB improved by 0.0159463

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.462
ELB improved by 0.0139667

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.449
ELB improved by 0.012276

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.439
ELB improved by 0.010825

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.429
ELB improved by 0.00957602

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-867.652
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-597.607
ELB improved by 270.045

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-539.025
ELB improved by 58.5827

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-493.835
ELB improved by 45.1895

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-469.583
ELB improved by 24.2523

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-459.336
ELB improved by 10.2468

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-454.377
ELB improved by 4.95912

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-451.123
ELB improved by 3.25393

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-448.487
ELB improved by 2.63645

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-446.152
ELB improved by 2.33501

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.015
ELB improved by 2.13678

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.038
ELB improved by 1.9774

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.207
ELB improved by 1.83077

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.526
ELB improved by 1.68128

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.009
ELB improved by 1.51613

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.684
ELB improved by 1.32507

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.578
ELB improved by 1.10681

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.7
ELB improved by 0.877099

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.038
ELB improved by 0.66218

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.555
ELB improved by 0.482903

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.208
ELB improved by 0.347626

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.954
ELB improved by 0.253555

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.763
ELB improved by 0.191525

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.611
ELB improved by 0.15138

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.486
ELB improved by 0.125069

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.379
ELB improved by 0.107221

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.284
ELB improved by 0.0945686

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.199
ELB improved by 0.0852039

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.121
ELB improved by 0.0780209

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.049
ELB improved by 0.0723676

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.981
ELB improved by 0.0678444

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.917
ELB improved by 0.0641935

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.856
ELB improved by 0.0612377

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.797
ELB improved by 0.0588473

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.74
ELB improved by 0.0569216

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.684
ELB improved by 0.0553798

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.63
ELB improved by 0.054155

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.577
ELB improved by 0.053192

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.525
ELB improved by 0.0524459

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.473
ELB improved by 0.0518807

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.421
ELB improved by 0.0514688

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.37
ELB improved by 0.0511889

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.319
ELB improved by 0.0510247

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.268
ELB improved by 0.0509637

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.217
ELB improved by 0.0509951

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.166
ELB improved by 0.051109

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.115
ELB improved by 0.051296

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.063
ELB improved by 0.0515465

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.011
ELB improved by 0.0518511

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.959
ELB improved by 0.0522007

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.906
ELB improved by 0.0525873

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.853
ELB improved by 0.0530043

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.8
ELB improved by 0.0534473

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.746
ELB improved by 0.0539148

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.692
ELB improved by 0.0544084

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.637
ELB improved by 0.0549341

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.581
ELB improved by 0.0555022

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.525
ELB improved by 0.0561276

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.468
ELB improved by 0.0568304

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.411
ELB improved by 0.0576358

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.352
ELB improved by 0.0585743

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.292
ELB improved by 0.0596819

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.231
ELB improved by 0.0609999

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.169
ELB improved by 0.0625759

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.104
ELB improved by 0.0644644

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.038
ELB improved by 0.0667281

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.968
ELB improved by 0.0694408

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.896
ELB improved by 0.0726899

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.819
ELB improved by 0.0765816

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.738
ELB improved by 0.0812458

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.651
ELB improved by 0.0868407

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.557
ELB improved by 0.0935557

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.456
ELB improved by 0.101606

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.344
ELB improved by 0.111215

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.222
ELB improved by 0.122579

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.086
ELB improved by 0.135812

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.935
ELB improved by 0.150896

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.768
ELB improved by 0.167666

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.582
ELB improved by 0.185895

iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.376
ELB improved by 0.205457

iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.15
ELB improved by 0.226499

iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.9
ELB improved by 0.249471

iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.625
ELB improved by 0.274835

iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.323
ELB improved by 0.302239

iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.994
ELB improved by 0.329573

iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.638
ELB improved by 0.35523

iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.25
ELB improved by 0.388229

iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.793
ELB improved by 0.457569

iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.203
ELB improved by 0.589776

iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.446
ELB improved by 0.756559

iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.488
ELB improved by 0.958335

iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.296
ELB improved by 1.19153

iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.108
ELB improved by 1.18859

iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.182
ELB improved by 0.926222

iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.517
ELB improved by 0.664787

iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.026
ELB improved by 0.490363

iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.624
ELB improved by 0.401939

iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.246
ELB improved by 0.378579

iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.87
ELB improved by 0.375585

iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.537
ELB improved by 0.333531

iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.301
ELB improved by 0.235618

iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.165
ELB improved by 0.135658

iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.092
ELB improved by 0.0738037

iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.048
ELB improved by 0.0436533

iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.018
ELB improved by 0.0296739

iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.996
ELB improved by 0.0227449

iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.977
ELB improved by 0.0188325

iteration 108
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.96
ELB improved by 0.0162934

iteration 109
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.946
ELB improved by 0.0144541

iteration 110
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.933
ELB improved by 0.0130199

iteration 111
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.921
ELB improved by 0.0118483

iteration 112
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.91
ELB improved by 0.0108621

iteration 113
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.9
ELB improved by 0.0100149

iteration 114
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.891
ELB improved by 0.00927664

ELB converged
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 24 ]
> 
> proc.time()
   user  system elapsed 
  2.757   0.241   3.041

Example timings

graper.Rcheck/graper-Ex.timings

name	user	system	elapsed
coef.graper	0.088	0.016	0.105
getPIPs	0.081	0.013	0.094
graper	0.133	0.017	0.151
makeExampleData	0.013	0.001	0.013
makeExampleDataWithUnequalGroups	0.033	0.002	0.039
plotELBO	0.257	0.017	0.276
plotGroupPenalties	0.747	0.025	0.779
plotPosterior	0.592	0.017	0.613
predict.graper	3.018	0.083	3.123
print.graper	0.081	0.010	0.091