Last updated on 2026-05-05 15:52:19 CEST.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [102s/555s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Attaching package: 'data.table'
The following object is masked from 'package:base':
%notin%
Linking to GEOS 3.14.1, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.559, system: 0.041, elapsed: 2.520 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.514, system: 0.068, elapsed: 14.613 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.218, system: 0.018, elapsed: 1.014 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.307, system: 0.828, elapsed: 107.650 seconds]
Computing values for grid cells...
... done. [user: 0.195, system: 0.007, elapsed: 0.191 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 19.461, system: 0.997, elapsed: 126.918 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.725, system: 0.049, elapsed: 2.162 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.371, system: 0.062, elapsed: 12.732 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.220, system: 0.014, elapsed: 0.324 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 8.311, system: 0.763, elapsed: 63.367 seconds]
Computing values for grid cells...
... done. [user: 0.185, system: 0.005, elapsed: 0.188 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 20.650, system: 0.962, elapsed: 79.409 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.623, system: 0.044, elapsed: 2.810 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.548, system: 0.059, elapsed: 16.367 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.228, system: 0.014, elapsed: 1.077 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.194, system: 0.819, elapsed: 125.239 seconds]
Computing values for grid cells...
... done. [user: 0.174, system: 0.003, elapsed: 0.252 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.269, system: 0.245, elapsed: 1.275 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 20.721, system: 1.218, elapsed: 148.009 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.514, system: 0.031, elapsed: 2.598 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.613, system: 0.058, elapsed: 14.394 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.229, system: 0.017, elapsed: 1.000 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.188, system: 0.867, elapsed: 131.475 seconds]
Computing values for grid cells...
... done. [user: 0.171, system: 0.002, elapsed: 0.187 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 11.751, system: 0.641, elapsed: 40.138 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 31.160, system: 1.642, elapsed: 190.856 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [103s/321s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.567, system: 0.055, elapsed: 2.034 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.630, system: 0.087, elapsed: 13.386 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.217, system: 0.020, elapsed: 0.973 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.640, system: 0.853, elapsed: 81.726 seconds]
Computing values for grid cells...
... done. [user: 0.171, system: 0.003, elapsed: 0.474 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 19.802, system: 1.047, elapsed: 99.581 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.565, system: 0.042, elapsed: 3.712 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.655, system: 0.082, elapsed: 14.070 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.223, system: 0.015, elapsed: 0.864 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.710, system: 0.688, elapsed: 50.534 seconds]
Computing values for grid cells...
... done. [user: 0.166, system: 0.002, elapsed: 0.171 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 18.899, system: 0.849, elapsed: 70.427 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.563, system: 0.047, elapsed: 1.932 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.628, system: 0.104, elapsed: 14.811 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.220, system: 0.014, elapsed: 0.355 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.963, system: 0.766, elapsed: 75.712 seconds]
Computing values for grid cells...
... done. [user: 0.180, system: 0.005, elapsed: 0.213 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.300, system: 0.298, elapsed: 1.084 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 20.636, system: 1.271, elapsed: 94.868 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.585, system: 0.053, elapsed: 1.751 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.614, system: 0.120, elapsed: 12.419 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.214, system: 0.015, elapsed: 0.673 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.975, system: 0.736, elapsed: 16.938 seconds]
Computing values for grid cells...
... done. [user: 0.181, system: 0.005, elapsed: 0.222 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 13.107, system: 0.685, elapsed: 16.607 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 33.355, system: 1.644, elapsed: 49.482 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64