Last updated on 2026-01-17 11:49:53 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.4 | 13.42 | 255.72 | 269.14 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.1.4 | 9.77 | 211.02 | 220.79 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.1.4 | 29.00 | 323.15 | 352.15 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.1.4 | 30.00 | 416.93 | 446.93 | OK | |
| r-devel-windows-x86_64 | 1.1.4 | 20.00 | 195.00 | 215.00 | OK | |
| r-patched-linux-x86_64 | 1.1.4 | 15.45 | 276.00 | 291.45 | OK | |
| r-release-linux-x86_64 | 1.1.4 | 14.94 | 238.45 | 253.39 | OK | |
| r-release-macos-arm64 | 1.1.4 | OK | ||||
| r-release-macos-x86_64 | 1.1.4 | 10.00 | 332.00 | 342.00 | ERROR | |
| r-release-windows-x86_64 | 1.1.4 | 22.00 | 200.00 | 222.00 | OK | |
| r-oldrel-macos-arm64 | 1.1.4 | OK | ||||
| r-oldrel-macos-x86_64 | 1.1.4 | 11.00 | 310.00 | 321.00 | ERROR | |
| r-oldrel-windows-x86_64 | 1.1.4 | 24.00 | 243.00 | 267.00 | OK |
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [102s/286s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.573, system: 0.046, elapsed: 2.579 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.451, system: 0.096, elapsed: 12.398 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.306, system: 0.028, elapsed: 0.223 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.465, system: 0.752, elapsed: 24.697 seconds]
Computing values for grid cells...
... done. [user: 0.177, system: 0.005, elapsed: 0.271 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 19.560, system: 0.952, elapsed: 41.013 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.558, system: 0.037, elapsed: 2.019 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.686, system: 0.089, elapsed: 20.721 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.219, system: 0.015, elapsed: 1.214 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.378, system: 0.788, elapsed: 51.700 seconds]
Computing values for grid cells...
... done. [user: 0.172, system: 0.004, elapsed: 0.175 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 19.560, system: 0.952, elapsed: 76.706 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.571, system: 0.046, elapsed: 1.503 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.354, system: 0.120, elapsed: 11.967 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.320, system: 0.016, elapsed: 0.786 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 8.932, system: 0.972, elapsed: 7.280 seconds]
Computing values for grid cells...
... done. [user: 0.168, system: 0.005, elapsed: 0.213 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.248, system: 0.340, elapsed: 1.026 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 22.433, system: 1.550, elapsed: 23.551 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.570, system: 0.036, elapsed: 2.242 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.697, system: 0.101, elapsed: 13.294 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.213, system: 0.015, elapsed: 1.028 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.805, system: 0.791, elapsed: 105.370 seconds]
Computing values for grid cells...
... done. [user: 0.176, system: 0.003, elapsed: 0.188 seconds]
Starting 50 permutations...
... serially ...
|
| | 0%
|
|== | 2%
|
|=== | 4%
|
|===== | 6%
|
|====== | 8%
|
|======== | 10%
|
|========== | 12%
|
|=========== | 14%
|
|============= | 16%
|
|============== | 18%
|
|================ | 20%
|
|================== | 22%
|
|=================== | 24%
|
|===================== | 26%
|
|====================== | 28%
|
|======================== | 30%
|
|========================== | 32%
|
|=========================== | 34%
|
|============================= | 36%
|
|============================== | 38%
|
|================================ | 40%
|
|================================== | 42%
|
|=================================== | 44%
|
|===================================== | 46%
|
|====================================== | 48%
|
|======================================== | 50%
|
|========================================== | 52%
|
|=========================================== | 54%
|
|============================================= | 56%
|
|============================================== | 58%
|
|================================================ | 60%
|
|================================================== | 62%
|
|=================================================== | 64%
|
|===================================================== | 66%
|
|====================================================== | 68%
|
|======================================================== | 70%
|
|========================================================== | 72%
|
|=========================================================== | 74%
|
|============================================================= | 76%
|
|============================================================== | 78%
|
|================================================================ | 80%
|
|================================================================== | 82%
|
|=================================================================== | 84%
|
|===================================================================== | 86%
|
|====================================================================== | 88%
|
|======================================================================== | 90%
|
|========================================================================== | 92%
|
|=========================================================================== | 94%
|
|============================================================================= | 96%
|
|============================================================================== | 98%
|
|================================================================================| 100%
... computing probabilities from permuted values ...
... done. [user: 11.168, system: 0.574, elapsed: 14.621 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 30.343, system: 1.551, elapsed: 137.613 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [87s/223s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.589, system: 0.038, elapsed: 4.274 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.623, system: 0.064, elapsed: 26.029 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.210, system: 0.019, elapsed: 0.689 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.338, system: 0.444, elapsed: 12.168 seconds]
Computing values for grid cells...
... done. [user: 0.169, system: 0.003, elapsed: 0.410 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.509, system: 0.590, elapsed: 45.104 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.628, system: 0.033, elapsed: 4.489 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.668, system: 0.096, elapsed: 26.426 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.203, system: 0.017, elapsed: 0.635 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.336, system: 0.445, elapsed: 13.203 seconds]
Computing values for grid cells...
... done. [user: 0.172, system: 0.003, elapsed: 0.499 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.576, system: 0.614, elapsed: 46.810 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.582, system: 0.041, elapsed: 4.174 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.661, system: 0.084, elapsed: 25.447 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.199, system: 0.013, elapsed: 0.557 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.379, system: 0.408, elapsed: 13.148 seconds]
Computing values for grid cells...
... done. [user: 0.181, system: 0.005, elapsed: 0.578 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.204, system: 0.305, elapsed: 1.962 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.874, system: 0.880, elapsed: 47.641 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.607, system: 0.033, elapsed: 2.945 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.572, system: 0.072, elapsed: 25.381 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.200, system: 0.012, elapsed: 0.497 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.259, system: 0.389, elapsed: 12.996 seconds]
Computing values for grid cells...
... done. [user: 0.171, system: 0.003, elapsed: 0.489 seconds]
Starting 50 permutations...
... serially ...
|
| | 0%
|
|== | 2%
|
|=== | 4%
|
|===== | 6%
|
|====== | 8%
|
|======== | 10%
|
|========== | 12%
|
|=========== | 14%
|
|============= | 16%
|
|============== | 18%
|
|================ | 20%
|
|================== | 22%
|
|=================== | 24%
|
|===================== | 26%
|
|====================== | 28%
|
|======================== | 30%
|
|========================== | 32%
|
|=========================== | 34%
|
|============================= | 36%
|
|============================== | 38%
|
|================================ | 40%
|
|================================== | 42%
|
|=================================== | 44%
|
|===================================== | 46%
|
|====================================== | 48%
|
|======================================== | 50%
|
|========================================== | 52%
|
|=========================================== | 54%
|
|============================================= | 56%
|
|============================================== | 58%
|
|================================================ | 60%
|
|================================================== | 62%
|
|=================================================== | 64%
|
|===================================================== | 66%
|
|====================================================== | 68%
|
|======================================================== | 70%
|
|========================================================== | 72%
|
|=========================================================== | 74%
|
|============================================================= | 76%
|
|============================================================== | 78%
|
|================================================================ | 80%
|
|================================================================== | 82%
|
|=================================================================== | 84%
|
|===================================================================== | 86%
|
|====================================================================== | 88%
|
|======================================================================== | 90%
|
|========================================================================== | 92%
|
|=========================================================================== | 94%
|
|============================================================================= | 96%
|
|============================================================================== | 98%
|
|================================================================================| 100%
... computing probabilities from permuted values ...
... done. [user: 10.752, system: 0.484, elapsed: 27.109 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 27.231, system: 1.018, elapsed: 71.172 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64