SVAlignR: Recovering Structure of Long Molecules from Structural Variation Data

Implements a method to combine multiple levels of multiple sequence alignment to uncover the structure of complex DNA rearrangements.

Version: 0.9.2
Depends: R (≥ 4.4)
Imports: methods, graphics, grDevices, oompaBase, Biostrings, NameNeedle, dendextend, ape, stringr, igraph, Polychrome, colorspace
Suggests: msa, viridisLite, R.rsp, knitr, rmarkdown
Published: 2025-09-24
DOI: 10.32614/CRAN.package.SVAlignR
Author: Kevin R. Coombes [aut, cre]
Maintainer: Kevin R. Coombes <krc at silicovore.com>
License: Apache License (== 2.0)
URL: http://oompa.r-forge.r-project.org/
NeedsCompilation: no
CRAN checks: SVAlignR results

Documentation:

Reference manual: SVAlignR.html , SVAlignR.pdf
Vignettes: SVAlignR and Virus-Associated Cancer (source)

Downloads:

Package source: SVAlignR_0.9.2.tar.gz
Windows binaries: r-devel: not available, r-release: not available, r-oldrel: not available
macOS binaries: r-release (arm64): not available, r-oldrel (arm64): not available, r-release (x86_64): not available, r-oldrel (x86_64): not available

Linking:

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