Last updated on 2026-01-29 10:52:21 CET.
| Package | ERROR | OK |
|---|---|---|
| mapi | 2 | 11 |
Current CRAN status: ERROR: 2, OK: 11
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [112s/551s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.582, system: 0.040, elapsed: 5.893 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.612, system: 0.063, elapsed: 33.052 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.223, system: 0.020, elapsed: 1.233 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.181, system: 0.971, elapsed: 181.429 seconds]
Computing values for grid cells...
... done. [user: 0.174, system: 0.003, elapsed: 0.467 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 19.356, system: 1.119, elapsed: 223.787 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.576, system: 0.032, elapsed: 4.272 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.699, system: 0.102, elapsed: 26.850 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.217, system: 0.016, elapsed: 1.160 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.177, system: 0.844, elapsed: 140.408 seconds]
Computing values for grid cells...
... done. [user: 0.171, system: 0.004, elapsed: 0.421 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 19.405, system: 1.018, elapsed: 174.418 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.564, system: 0.041, elapsed: 4.134 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.676, system: 0.119, elapsed: 23.895 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.324, system: 0.016, elapsed: 1.282 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.509, system: 0.884, elapsed: 80.500 seconds]
Computing values for grid cells...
... done. [user: 0.188, system: 0.005, elapsed: 0.195 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.231, system: 0.335, elapsed: 0.992 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 21.199, system: 1.445, elapsed: 112.442 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.592, system: 0.044, elapsed: 1.521 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.099, system: 0.042, elapsed: 9.112 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.356, system: 0.031, elapsed: 0.205 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 9.065, system: 0.983, elapsed: 5.484 seconds]
Computing values for grid cells...
... done. [user: 0.183, system: 0.003, elapsed: 0.176 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 19.408, system: 1.585, elapsed: 10.949 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 40.777, system: 2.745, elapsed: 28.197 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [99s/553s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.636, system: 0.043, elapsed: 4.467 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.559, system: 0.066, elapsed: 24.213 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.213, system: 0.020, elapsed: 1.185 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.958, system: 0.955, elapsed: 182.023 seconds]
Computing values for grid cells...
... done. [user: 0.170, system: 0.003, elapsed: 0.479 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 19.116, system: 1.110, elapsed: 213.814 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.587, system: 0.030, elapsed: 4.841 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.577, system: 0.058, elapsed: 27.175 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.218, system: 0.017, elapsed: 1.241 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.799, system: 0.803, elapsed: 109.054 seconds]
Computing values for grid cells...
... done. [user: 0.162, system: 0.003, elapsed: 0.468 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 18.907, system: 0.931, elapsed: 144.234 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.641, system: 0.042, elapsed: 4.864 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.647, system: 0.093, elapsed: 24.750 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.211, system: 0.016, elapsed: 1.174 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.849, system: 0.752, elapsed: 80.406 seconds]
Computing values for grid cells...
... done. [user: 0.181, system: 0.005, elapsed: 0.197 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.242, system: 0.319, elapsed: 1.103 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 20.448, system: 1.262, elapsed: 113.951 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.606, system: 0.034, elapsed: 1.963 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.386, system: 0.085, elapsed: 11.846 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.211, system: 0.014, elapsed: 0.268 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.505, system: 0.626, elapsed: 24.417 seconds]
Computing values for grid cells...
... done. [user: 0.165, system: 0.003, elapsed: 0.181 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 12.134, system: 0.635, elapsed: 28.193 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 30.678, system: 1.421, elapsed: 67.755 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64