Last updated on 2025-11-16 09:49:32 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.4 | 11.86 | 248.50 | 260.36 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.1.4 | 10.94 | 219.32 | 230.26 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.1.4 | 33.00 | 275.91 | 308.91 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.1.4 | 26.00 | 332.49 | 358.49 | OK | |
| r-devel-windows-x86_64 | 1.1.4 | 25.00 | 189.00 | 214.00 | OK | |
| r-patched-linux-x86_64 | 1.1.4 | 14.43 | 249.95 | 264.38 | OK | |
| r-release-linux-x86_64 | 1.1.4 | 14.55 | 304.46 | 319.01 | OK | |
| r-release-macos-arm64 | 1.1.4 | 6.00 | 96.00 | 102.00 | OK | |
| r-release-macos-x86_64 | 1.1.4 | 11.00 | 150.00 | 161.00 | ERROR | |
| r-release-windows-x86_64 | 1.1.4 | 21.00 | 188.00 | 209.00 | OK | |
| r-oldrel-macos-arm64 | 1.1.4 | 6.00 | 92.00 | 98.00 | OK | |
| r-oldrel-macos-x86_64 | 1.1.4 | 11.00 | 204.00 | 215.00 | ERROR | |
| r-oldrel-windows-x86_64 | 1.1.4 | 26.00 | 230.00 | 256.00 | OK |
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [79s/106s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.581, system: 0.055, elapsed: 4.165 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.679, system: 0.186, elapsed: 23.426 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.200, system: 0.017, elapsed: 0.314 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.035, system: 0.237, elapsed: 5.991 seconds]
Computing values for grid cells...
... done. [user: 0.171, system: 0.004, elapsed: 0.239 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.235, system: 0.529, elapsed: 35.457 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.495, system: 0.034, elapsed: 1.718 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 8.546, system: 0.065, elapsed: 8.865 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.168, system: 0.009, elapsed: 0.177 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.474, system: 0.147, elapsed: 3.907 seconds]
Computing values for grid cells...
... done. [user: 0.171, system: 0.003, elapsed: 0.180 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 14.364, system: 0.279, elapsed: 15.409 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.353, system: 0.023, elapsed: 1.384 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 7.513, system: 0.033, elapsed: 7.607 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.161, system: 0.008, elapsed: 0.175 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.272, system: 0.156, elapsed: 3.941 seconds]
Computing values for grid cells...
... done. [user: 0.187, system: 0.020, elapsed: 0.346 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.219, system: 0.262, elapsed: 1.263 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 14.296, system: 0.540, elapsed: 15.472 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.697, system: 0.059, elapsed: 2.159 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.656, system: 0.165, elapsed: 11.750 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.181, system: 0.010, elapsed: 0.192 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.394, system: 0.146, elapsed: 3.567 seconds]
Computing values for grid cells...
... done. [user: 0.153, system: 0.003, elapsed: 0.157 seconds]
Starting 50 permutations...
... serially ...
|
| | 0%
|
|== | 2%
|
|=== | 4%
|
|===== | 6%
|
|====== | 8%
|
|======== | 10%
|
|========== | 12%
|
|=========== | 14%
|
|============= | 16%
|
|============== | 18%
|
|================ | 20%
|
|================== | 22%
|
|=================== | 24%
|
|===================== | 26%
|
|====================== | 28%
|
|======================== | 30%
|
|========================== | 32%
|
|=========================== | 34%
|
|============================= | 36%
|
|============================== | 38%
|
|================================ | 40%
|
|================================== | 42%
|
|=================================== | 44%
|
|===================================== | 46%
|
|====================================== | 48%
|
|======================================== | 50%
|
|========================================== | 52%
|
|=========================================== | 54%
|
|============================================= | 56%
|
|============================================== | 58%
|
|================================================ | 60%
|
|================================================== | 62%
|
|=================================================== | 64%
|
|===================================================== | 66%
|
|====================================================== | 68%
|
|======================================================== | 70%
|
|========================================================== | 72%
|
|=========================================================== | 74%
|
|============================================================= | 76%
|
|============================================================== | 78%
|
|================================================================ | 80%
|
|================================================================== | 82%
|
|=================================================================== | 84%
|
|===================================================================== | 86%
|
|====================================================================== | 88%
|
|======================================================================== | 90%
|
|========================================================================== | 92%
|
|=========================================================================== | 94%
|
|============================================================================= | 96%
|
|============================================================================== | 98%
|
|================================================================================| 100%
... computing probabilities from permuted values ...
... done. [user: 10.532, system: 0.649, elapsed: 12.377 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 26.223, system: 1.053, elapsed: 30.877 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [86s/147s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.769, system: 0.075, elapsed: 2.815 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.715, system: 0.223, elapsed: 16.823 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.200, system: 0.018, elapsed: 0.327 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.890, system: 0.255, elapsed: 6.036 seconds]
Computing values for grid cells...
... done. [user: 0.186, system: 0.012, elapsed: 0.288 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.325, system: 0.616, elapsed: 27.204 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.948, system: 0.107, elapsed: 2.983 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.974, system: 0.307, elapsed: 16.958 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.195, system: 0.012, elapsed: 0.299 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.870, system: 0.194, elapsed: 6.138 seconds]
Computing values for grid cells...
... done. [user: 0.166, system: 0.005, elapsed: 0.274 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.721, system: 0.661, elapsed: 27.523 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.718, system: 0.071, elapsed: 2.747 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.889, system: 0.294, elapsed: 16.910 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.200, system: 0.016, elapsed: 0.489 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.753, system: 0.192, elapsed: 6.116 seconds]
Computing values for grid cells...
... done. [user: 0.178, system: 0.007, elapsed: 0.291 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 4 3
... computing probabilities from permuted values ...
... done. [user: 1.123, system: 0.262, elapsed: 1.239 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.522, system: 0.879, elapsed: 28.855 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.649, system: 0.031, elapsed: 2.717 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.664, system: 0.070, elapsed: 18.077 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.201, system: 0.012, elapsed: 0.331 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.768, system: 0.181, elapsed: 7.286 seconds]
Computing values for grid cells...
... done. [user: 0.169, system: 0.004, elapsed: 0.415 seconds]
Starting 50 permutations...
... serially ...
|
| | 0%
|
|== | 2%
|
|=== | 4%
|
|===== | 6%
|
|====== | 8%
|
|======== | 10%
|
|========== | 12%
|
|=========== | 14%
|
|============= | 16%
|
|============== | 18%
|
|================ | 20%
|
|================== | 22%
|
|=================== | 24%
|
|===================== | 26%
|
|====================== | 28%
|
|======================== | 30%
|
|========================== | 32%
|
|=========================== | 34%
|
|============================= | 36%
|
|============================== | 38%
|
|================================ | 40%
|
|================================== | 42%
|
|=================================== | 44%
|
|===================================== | 46%
|
|====================================== | 48%
|
|======================================== | 50%
|
|========================================== | 52%
|
|=========================================== | 54%
|
|============================================= | 56%
|
|============================================== | 58%
|
|================================================ | 60%
|
|================================================== | 62%
|
|=================================================== | 64%
|
|===================================================== | 66%
|
|====================================================== | 68%
|
|======================================================== | 70%
|
|========================================================== | 72%
|
|=========================================================== | 74%
|
|============================================================= | 76%
|
|============================================================== | 78%
|
|================================================================ | 80%
|
|================================================================== | 82%
|
|=================================================================== | 84%
|
|===================================================================== | 86%
|
|====================================================================== | 88%
|
|======================================================================== | 90%
|
|========================================================================== | 92%
|
|=========================================================================== | 94%
|
|============================================================================= | 96%
|
|============================================================================== | 98%
|
|================================================================================| 100%
... computing probabilities from permuted values ...
... done. [user: 10.683, system: 0.495, elapsed: 23.713 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 26.801, system: 0.816, elapsed: 53.761 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64