| Back to Workflows build report for BioC 3.21 |
This page was generated on 2025-09-12 16:30 -0400 (Fri, 12 Sep 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4824 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.5.1 RC (2025-06-05 r88288) -- "Great Square Root" | 4606 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 15/30 | Hostname | OS / Arch | INSTALL | BUILD | ||||||||
| highthroughputassays 1.32.0 (landing page) Bioconductor Package Maintainer
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | ... NOT SUPPORTED ... | ||||||||||
|
To the developers/maintainers of the highthroughputassays package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: highthroughputassays |
| Version: 1.32.0 |
| Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data highthroughputassays |
| StartedAt: 2025-09-12 13:04:42 -0400 (Fri, 12 Sep 2025) |
| EndedAt: 2025-09-12 13:05:03 -0400 (Fri, 12 Sep 2025) |
| EllapsedTime: 21.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data highthroughputassays
###
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* checking for file ‘highthroughputassays/DESCRIPTION’ ... OK
* preparing ‘highthroughputassays’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘high-throughput-assays.Rmd’ using rmarkdown
Quitting from high-throughput-assays.Rmd:80-90 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `add_ggcyto()`:
! object '+.gg' not found
---
Backtrace:
▆
1. ├─ggcyto::ggcyto(gs, aes(x = CD3, y = SSC))
2. └─ggcyto:::ggcyto.GatingSet(gs, aes(x = CD3, y = SSC))
3. └─ggcyto:::ggcyto.flowSet(data = data, mapping = mapping, ...)
4. ├─p + ggcyto_par_default()
5. └─p + ggcyto_par_default()
6. └─ggcyto:::add_ggcyto(e1, e2, e2name)
7. ├─e1 + e2.new
8. └─e1 + e2.new
9. └─ggcyto:::add_ggcyto(e1, e2, e2name)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'high-throughput-assays.Rmd' failed with diagnostics:
object '+.gg' not found
--- failed re-building ‘high-throughput-assays.Rmd’
SUMMARY: processing the following file failed:
‘high-throughput-assays.Rmd’
Error: Vignette re-building failed.
Execution halted