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This page was generated on 2025-11-27 15:41 -0500 (Thu, 27 Nov 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 4877
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 253/435HostnameOS / ArchINSTALLBUILDCHECK
miRNATarget 1.48.0  (landing page)
Y-h. Taguchi
Snapshot Date: 2025-11-27 07:30 -0500 (Thu, 27 Nov 2025)
git_url: https://git.bioconductor.org/packages/miRNATarget
git_branch: RELEASE_3_22
git_last_commit: 564aeb3
git_last_commit_date: 2025-10-29 09:33:12 -0500 (Wed, 29 Oct 2025)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published


CHECK results for miRNATarget on nebbiolo2

To the developers/maintainers of the miRNATarget package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: miRNATarget
Version: 1.48.0
Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:miRNATarget.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings miRNATarget_1.48.0.tar.gz
StartedAt: 2025-11-27 12:44:37 -0500 (Thu, 27 Nov 2025)
EndedAt: 2025-11-27 12:46:00 -0500 (Thu, 27 Nov 2025)
EllapsedTime: 83.0 seconds
RetCode: 0
Status:   OK  
CheckDir: miRNATarget.Rcheck
Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:miRNATarget.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings miRNATarget_1.48.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.22-data-experiment/meat/miRNATarget.Rcheck’
* using R version 4.5.2 (2025-10-31)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* checking for file ‘miRNATarget/DESCRIPTION’ ... OK
* this is package ‘miRNATarget’ version ‘1.48.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  vignettes/.goutputstream-8N717W
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘miRNATarget’ can be installed ... OK
* checking installed package size ... INFO
  installed size is 59.6Mb
  sub-directories of 1Mb or more:
    data  59.3Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.22-data-experiment/meat/miRNATarget.Rcheck/00check.log’
for details.


Installation output

miRNATarget.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD INSTALL miRNATarget
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.22-bioc/R/site-library’
* installing *source* package ‘miRNATarget’ ...
** this is package ‘miRNATarget’ version ‘1.48.0’
** using staged installation
** data
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (miRNATarget)

Tests output


Example timings

miRNATarget.Rcheck/miRNATarget-Ex.timings

nameusersystemelapsed
HS_conv_id0.0150.0020.017
HS_refseq_to_affy_hc_g1100.0030.0010.004
HS_refseq_to_affy_hg_focus0.0150.0010.016
HS_refseq_to_affy_hg_u133_plus_20.0580.0000.059
HS_refseq_to_affy_hg_u133a0.0340.0020.036
HS_refseq_to_affy_hg_u133a_20.0370.0000.036
HS_refseq_to_affy_hg_u133b0.0180.0000.017
HS_refseq_to_affy_hg_u95a0.0240.0000.023
HS_refseq_to_affy_hg_u95av20.0220.0000.022
HS_refseq_to_affy_hg_u95b0.0130.0010.014
HS_refseq_to_affy_hg_u95c0.010.000.01
HS_refseq_to_affy_hg_u95d0.0060.0000.006
HS_refseq_to_affy_hg_u95e0.0110.0000.010
HS_refseq_to_affy_huex_1_0_st_v20.7700.0410.812
HS_refseq_to_affy_hugene_1_0_st_v10.0500.0020.052
HS_refseq_to_affy_hugenefl0.0150.0000.014
HS_refseq_to_affy_u133_x3p0.1270.0020.130
HS_refseq_to_agilent_cgh_44b0.0110.0000.011
HS_refseq_to_agilent_wholegenome0.0650.0010.067
HS_refseq_to_canonical_transcript_stable_id0.0600.0010.062
HS_refseq_to_ccds0.0310.0000.032
HS_refseq_to_codelink0.0340.0000.034
HS_refseq_to_efg_agilent_sureprint_g3_ge_8x60k0.0000.0010.001
HS_refseq_to_efg_agilent_wholegenome_4x44k_v10.0010.0000.001
HS_refseq_to_efg_agilent_wholegenome_4x44k_v20.0000.0010.001
HS_refseq_to_embl0.6400.0140.654
HS_refseq_to_ensembl_exon_id0.0010.0000.001
HS_refseq_to_ensembl_gene_id0.1360.0000.136
HS_refseq_to_ensembl_peptide_id0.0430.0000.042
HS_refseq_to_ensembl_transcript_id0.0520.0000.052
HS_refseq_to_entrezgene0.0490.0000.049
HS_refseq_to_hgnc_id0.0450.0010.046
HS_refseq_to_hgnc_symbol0.1100.0030.112
HS_refseq_to_hgnc_transcript_name0.0460.0000.046
HS_refseq_to_illumina_humanht_120.0460.0000.046
HS_refseq_to_illumina_humanwg_6_v10.0420.0000.042
HS_refseq_to_illumina_humanwg_6_v20.0350.0010.036
HS_refseq_to_illumina_humanwg_6_v30.0440.0000.043
HS_refseq_to_interpro0.1120.0000.112
HS_refseq_to_ipi0.1020.0050.107
HS_refseq_to_merops0.0040.0000.005
HS_refseq_to_pdb0.0850.0000.085
HS_refseq_to_pfam0.0640.0020.066
HS_refseq_to_phalanx_onearray0.0370.0010.038
HS_refseq_to_protein_id0.9050.0110.915
HS_refseq_to_refseq_dna0.0570.0000.056
HS_refseq_to_refseq_genomic0.0010.0000.001
HS_refseq_to_refseq_peptide0.0880.0000.088
HS_refseq_to_rfam0.0010.0010.002
HS_refseq_to_rfam_gene_name0.0010.0000.000
HS_refseq_to_rfam_transcript_name0.0000.0000.001
HS_refseq_to_smart0.0330.0000.034
HS_refseq_to_tigrfam0.0040.0010.005
HS_refseq_to_ucsc0.0480.0000.047
HS_refseq_to_unigene0.060.000.06
HS_refseq_to_uniprot_genename0.0400.0010.041
HS_refseq_to_uniprot_genename_transcript_name0.0020.0000.001
HS_refseq_to_uniprot_sptrembl0.0000.0010.001
HS_refseq_to_uniprot_swissprot0.0010.0000.001
HS_refseq_to_uniprot_swissprot_accession0.0010.0000.001
HS_refseq_to_wikigene_id0.0000.0010.001
HS_refseq_to_wikigene_name0.0450.0000.044
MM_conv_id0.0030.0000.002
MM_refseq_to_affy_mg_u74a0.0150.0010.016
MM_refseq_to_affy_mg_u74av20.0130.0000.014
MM_refseq_to_affy_mg_u74b0.0100.0020.013
MM_refseq_to_affy_mg_u74bv20.0120.0000.012
MM_refseq_to_affy_mg_u74c0.0040.0000.004
MM_refseq_to_affy_mg_u74cv20.0050.0000.006
MM_refseq_to_affy_moe430a0.0290.0030.032
MM_refseq_to_affy_moe430b0.0130.0020.016
MM_refseq_to_affy_moex_1_0_st_v10.6650.0080.673
MM_refseq_to_affy_mogene_1_0_st_v10.0370.0010.037
MM_refseq_to_affy_mouse430_20.0420.0010.043
MM_refseq_to_affy_mouse430a_20.0280.0000.027
MM_refseq_to_affy_mu11ksuba0.0090.0000.009
MM_refseq_to_affy_mu11ksubb0.0070.0000.006
MM_refseq_to_agilent_wholegenome0.0550.0010.056
MM_refseq_to_canonical_transcript_stable_id0.0530.0010.054
MM_refseq_to_ccds0.0280.0000.028
MM_refseq_to_codelink0.0280.0010.029
MM_refseq_to_efg_agilent_sureprint_g3_ge_8x60k0.0010.0000.001
MM_refseq_to_efg_agilent_wholegenome_4x44k_v10.0000.0000.001
MM_refseq_to_efg_agilent_wholegenome_4x44k_v20.0010.0000.001
MM_refseq_to_embl0.2690.0010.270
MM_refseq_to_ensembl_exon_id0.0010.0000.001
MM_refseq_to_ensembl_gene_id0.0360.0010.037
MM_refseq_to_ensembl_peptide_id0.0360.0000.035
MM_refseq_to_ensembl_transcript_id0.0390.0000.039
MM_refseq_to_entrezgene0.0330.0000.033
MM_refseq_to_fantom0.090.000.09
MM_refseq_to_illumina_mousewg_6_v10.0470.0000.047
MM_refseq_to_illumina_mousewg_6_v20.0480.0000.047
MM_refseq_to_interpro0.0960.0000.095
MM_refseq_to_ipi0.0010.0000.001
MM_refseq_to_merops0.0030.0000.003
MM_refseq_to_mgi_id0.0350.0010.036
MM_refseq_to_mgi_symbol0.0340.0020.037
MM_refseq_to_mgi_transcript_name0.0390.0000.039
MM_refseq_to_pdb0.0100.0000.009
MM_refseq_to_pfam0.0550.0010.057
MM_refseq_to_phalanx_onearray0.0330.0010.035
MM_refseq_to_protein_id0.3710.0010.372
MM_refseq_to_refseq_dna0.0490.0010.049
MM_refseq_to_refseq_peptide0.0700.0000.069
MM_refseq_to_rfam0.0010.0000.001
MM_refseq_to_rfam_gene_name0.0010.0000.000
MM_refseq_to_rfam_transcript_name0.0010.0000.001
MM_refseq_to_smart0.0280.0000.028
MM_refseq_to_tigrfam0.0040.0000.004
MM_refseq_to_ucsc0.0380.0000.038
MM_refseq_to_unigene0.0480.0000.048
MM_refseq_to_uniprot_genename0.2420.0000.241
MM_refseq_to_uniprot_genename_transcript_name0.0020.0000.001
MM_refseq_to_uniprot_sptrembl0.0010.0000.001
MM_refseq_to_uniprot_swissprot0.0010.0000.001
MM_refseq_to_uniprot_swissprot_accession0.0000.0010.001
MM_refseq_to_wikigene_id0.0010.0000.001
MM_refseq_to_wikigene_name0.0340.0000.034
TBL20.8100.1210.930
TBL2_HS1.1930.2501.444
TBL2_MM0.6770.1580.835
conv_id0.0020.0000.002
id_conv0.0290.0000.029