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This page was generated on 2025-09-02 15:01 -0400 (Tue, 02 Sep 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 4824
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 307/432HostnameOS / ArchINSTALLBUILDCHECK
ProteinGymR 1.2.5  (landing page)
Tram Nguyen
Snapshot Date: 2025-09-02 07:30 -0400 (Tue, 02 Sep 2025)
git_url: https://git.bioconductor.org/packages/ProteinGymR
git_branch: RELEASE_3_21
git_last_commit: 919a7fe
git_last_commit_date: 2025-08-30 17:59:26 -0400 (Sat, 30 Aug 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  skipped

BUILD results for ProteinGymR on nebbiolo1

To the developers/maintainers of the ProteinGymR package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: ProteinGymR
Version: 1.2.5
Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data ProteinGymR
StartedAt: 2025-09-02 11:40:04 -0400 (Tue, 02 Sep 2025)
EndedAt: 2025-09-02 11:41:10 -0400 (Tue, 02 Sep 2025)
EllapsedTime: 66.4 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data ProteinGymR
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* checking for file ‘ProteinGymR/DESCRIPTION’ ... OK
* preparing ‘ProteinGymR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘data_import_and_representation.Rmd’ using rmarkdown
--- finished re-building ‘data_import_and_representation.Rmd’

--- re-building ‘visualization_exploration.Rmd’ using rmarkdown

Quitting from visualization_exploration.Rmd:82-89 [ACE default heatmap]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `make_col_fun_dms()`:
! Required package 'colorRamp2' not found. Use 'BiocManager::install("colorRamp2") to install it.
---
Backtrace:
    ▆
 1. └─ProteinGymR::plot_dms_heatmap(...)
 2.   └─ProteinGymR:::make_col_fun_dms(reordered_matrix, color_scheme)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'visualization_exploration.Rmd' failed with diagnostics:
Required package 'colorRamp2' not found. Use 'BiocManager::install("colorRamp2") to install it.
--- failed re-building ‘visualization_exploration.Rmd’

SUMMARY: processing the following file failed:
  ‘visualization_exploration.Rmd’

Error: Vignette re-building failed.
Execution halted