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### Running command:
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###   /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/Rscript -e "BiocCheck::BiocCheck('preprocessCore_1.74.0.tar.gz','quit-with-status'=TRUE)"
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── Installing preprocessCore ───────────────────────────────────────────────────
✔ Package installed successfully
── preprocessCore session metadata ─────────────────────────────────────────────
→ sourceDir: /tmp/Rtmpn0wQzK/file86c7f3f9343cc/preprocessCore
→ BiocVersion: 3.23
→ Package: preprocessCore
→ PackageVersion: 1.74.0
→ BiocCheckDir: /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/preprocessCore.BiocCheck
→ BiocCheckVersion: 1.48.0
→ sourceDir: /tmp/Rtmpn0wQzK/file86c7f3f9343cc/preprocessCore
→ installDir: /tmp/Rtmpn0wQzK/file86c7f191b8694
→ isTarBall: TRUE
→ platform: unix
── Running BiocCheck on preprocessCore ─────────────────────────────────────────
* Checking for deprecated package usage...
* Checking for remote package usage...
* Checking for 'LazyData: true' usage...
* Checking version number...
* Checking for version number mismatch...
* Checking version number validity...
* Checking R version dependency...
* Checking package size...
* Checking individual file sizes...
* Checking biocViews...
* Checking that biocViews are present...
* Checking package type based on biocViews...
→ Software
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* Checking biocViews validity...
* Checking for recommended biocViews...
No vignettes found.
Warning in FUN(X[[i]], ...) :
  incomplete final line found on '/tmp/Rtmpn0wQzK/file86c7f3f9343cc/preprocessCore/man/colSummarize.Rd'
Warning in FUN(X[[i]], ...) :
  incomplete final line found on '/tmp/Rtmpn0wQzK/file86c7f3f9343cc/preprocessCore/man/subColSummarize.Rd'
ℹ NOTE: Consider adding these automatically suggested biocViews: Preprocessing
ℹ Search 'biocViews' at https://contributions.bioconductor.org
* Checking build system compatibility...
* Checking for proper Description: field...
* Checking if DESCRIPTION is well formatted...
* Checking for whitespace in DESCRIPTION field names...
* Checking that Package field matches directory/tarball name...
* Checking for Version: field...
✖ ERROR: Remove Maintainer field. Use Authors@R [cre] designation.
* Checking License: for restrictive use...
* Checking for recommended DESCRIPTION fields...
ℹ NOTE: Provide 'BugReports' field(s) in DESCRIPTION
* Checking for Bioconductor software dependencies...
ℹ NOTE: No Bioconductor dependencies detected. Note that some infrastructure
packages may not have Bioconductor dependencies. For more information, reach
out to the Bioconductor community and/or consider a CRAN submission.
* Checking for pinned package versions in DESCRIPTION...
* Checking for 'fnd' role in Authors@R...
ℹ NOTE: No 'fnd' role found in Authors@R. If the work is supported by a grant,
consider adding the 'fnd' role to the list of authors.
* Checking NAMESPACE...
* Checking .Rbuildignore...
* Checking for stray BiocCheck output folders...
* Checking vignette directory...
✖ ERROR: No 'vignettes' directory.
* Checking package installation calls in R code...
* Checking for library/require of preprocessCore...
* Checking coding practice...
ℹ NOTE: Avoid 1:...; use seq_len() or seq_along()
  Found in files:
    • normalize.quantiles.R (line 63, column 15)
    • normalize.quantiles.R (line 75, column 15)
* Checking parsed R code in R directory, examples, vignettes...
* Checking function lengths...
ℹ NOTE: The recommended function length is 50 lines or less. There is 1
function greater than 50 lines.
  The longest 5 functions are:
    • normalize.quantiles.robust() (R/normalize.quantiles.R): 62 lines
* Checking man page documentation...
✖ ERROR: At least 80% of man pages documenting exported objects must have
runnable examples.
  The following pages do not:
    • normalize.quantiles.Rd
    • ...
    • rma.background.correct.Rd
* Checking package NEWS...
ℹ NOTE: Consider adding a NEWS file, so your package news will be included in
Bioconductor release announcements.
* Checking unit tests...
* Checking skip_on_bioc() in tests...
* Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source, and
vignette source...
ℹ NOTE: Consider shorter lines; 56 lines (3%) are > 80 characters long.
  First few lines:
    • R/normalize.quantiles.R#L23 ## approx.method which ne ...
    • ...
    • man/rma.background.correct.Rd#L14 matrix, but instead background corre
    ...
ℹ NOTE: Consider 4 spaces instead of tabs; 10 lines (1%) contain tabs.
  First few lines:
    • R/plmd.R#L19 ...
    • ...
    • man/rma.background.correct.Rd#L31 Berkeley. pp 17-21 ...
ℹ NOTE: Consider multiples of 4 spaces for line indents; 575 lines (34%) are
not.
  First few lines:
    • R/colSummarize.R#L14 if (!is.matrix(y)) ...
    • ...
    • man/subrcModels.Rd#L48 The function \code{rcModelMedianP ...
ℹ See https://contributions.bioconductor.org/r-code.html
ℹ See styler package: https://cran.r-project.org/package=styler as described in
the BiocCheck vignette.
* Checking if package already exists in CRAN...
* Checking for bioc-devel mailing list subscription...
ℹ NOTE: Cannot determine whether maintainer is subscribed to the Bioc-Devel
mailing list (requires admin credentials). Subscribe here:
https://stat.ethz.ch/mailman/listinfo/bioc-devel
* Checking for support site registration...
ℹ Maintainer is registered at support site.
✖ ERROR: Add package to Watched Tags in your Support Site profile; visit
https://support.bioconductor.org/accounts/edit/profile
── BiocCheck v1.48.0 results ───────────────────────────────────────────────────
✖ 4 ERRORS | ⚠ 0 WARNINGS | ℹ 11 NOTES
ℹ See the preprocessCore.BiocCheck folder and run
  browseVignettes(package = 'BiocCheck')
  for details.