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This page was generated on 2026-05-07 16:13 -0400 (Thu, 07 May 2026).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.4 LTS)x86_644.6.0 RC (2026-04-22 r89945) -- "Because it was There" 923
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Package 141/231HostnameOS / ArchINSTALLBUILDCHECKBIOCCHECK
microRNA 1.70.0  (landing page)
"Michael Lawrence"
Snapshot Date: 2026-05-07 13:01 -0400 (Thu, 07 May 2026)
git_url: https://git.bioconductor.org/packages/microRNA
git_branch: RELEASE_3_23
git_last_commit: e201e6c
git_last_commit_date: 2026-04-28 08:33:13 -0400 (Tue, 28 Apr 2026)
teran2Linux (Ubuntu 24.04.4 LTS) / x86_64  OK    OK    OK    ERROR  


BIOCCHECK results for microRNA on teran2

To the developers/maintainers of the microRNA package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: microRNA
Version: 1.70.0
Command: /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/Rscript -e "BiocCheck::BiocCheck('microRNA_1.70.0.tar.gz','quit-with-status'=TRUE)"
StartedAt: 2026-05-07 15:41:05 -0400 (Thu, 07 May 2026)
EndedAt: 2026-05-07 15:41:19 -0400 (Thu, 07 May 2026)
EllapsedTime: 14.4 seconds
RetCode: 1
Status:   ERROR  
CheckDir: None
Warnings: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/Rscript -e "BiocCheck::BiocCheck('microRNA_1.70.0.tar.gz','quit-with-status'=TRUE)"
###
##############################################################################
##############################################################################


── Installing microRNA ─────────────────────────────────────────────────────────
✔ Package installed successfully
── microRNA session metadata ───────────────────────────────────────────────────
→ sourceDir: /tmp/RtmplmqeEM/file811ab73a4fa53/microRNA
→ BiocVersion: 3.23
→ Package: microRNA
→ PackageVersion: 1.70.0
→ BiocCheckDir: /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/microRNA.BiocCheck
→ BiocCheckVersion: 1.48.0
→ sourceDir: /tmp/RtmplmqeEM/file811ab73a4fa53/microRNA
→ installDir: /tmp/RtmplmqeEM/file811ab78c4feed
→ isTarBall: TRUE
→ platform: unix
── Running BiocCheck on microRNA ───────────────────────────────────────────────
* Checking for deprecated package usage...
* Checking for remote package usage...
* Checking for 'LazyData: true' usage...
* Checking version number...
* Checking for version number mismatch...
* Checking version number validity...
* Checking R version dependency...
ℹ NOTE: Update R version dependency from 2.10 to 4.6.0
* Checking package size...
* Checking individual file sizes...
* Checking biocViews...
* Checking that biocViews are present...
* Checking package type based on biocViews...
→ Software
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* Checking biocViews validity...
* Checking for recommended biocViews...
No vignettes found.
* Checking build system compatibility...
* Checking for proper Description: field...
* Checking if DESCRIPTION is well formatted...
* Checking for whitespace in DESCRIPTION field names...
* Checking that Package field matches directory/tarball name...
* Checking for Version: field...
✖ ERROR: Remove Maintainer field. Use Authors@R [cre] designation.
* Checking License: for restrictive use...
* Checking for recommended DESCRIPTION fields...
ℹ NOTE: Provide 'URL', 'BugReports' field(s) in DESCRIPTION
* Checking for Bioconductor software dependencies...
ℹ Bioconductor dependencies found in Imports & Depends (100%).
* Checking for pinned package versions in DESCRIPTION...
* Checking for 'fnd' role in Authors@R...
ℹ NOTE: No 'fnd' role found in Authors@R. If the work is supported by a grant,
consider adding the 'fnd' role to the list of authors.
* Checking NAMESPACE...
* Checking .Rbuildignore...
* Checking for stray BiocCheck output folders...
* Checking vignette directory...
✖ ERROR: No 'vignettes' directory.
* Checking package installation calls in R code...
* Checking for library/require of microRNA...
* Checking coding practice...
ℹ NOTE: Avoid sapply(); use vapply()
  Found in files:
    • R/get_selfhyb_subseq.R (line 35, column 12)
    • ...
    • R/seedReg.R (line 14, column 37)
ℹ NOTE: Avoid using '=' for assignment and use '<-' instead
  Found in files:
    • R/get_selfhyb_subseq.R (line 1, column 10)
    • ...
    • R/seedReg.R (line 18, column 23)
* Checking parsed R code in R directory, examples, vignettes...
* Checking function lengths...
* Checking man page documentation...
* Checking package NEWS...
ℹ NOTE: Consider adding a NEWS file, so your package news will be included in
Bioconductor release announcements.
* Checking unit tests...
ℹ NOTE: Consider adding unit tests. We strongly encourage them. See
https://contributions.bioconductor.org/tests.html
* Checking skip_on_bioc() in tests...
* Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source, and
vignette source...
ℹ NOTE: Consider 4 spaces instead of tabs; 1 lines (0%) contain tabs.
  First few lines:
    • R/seedReg.R#L4 substr(x, start, stop) ...
ℹ NOTE: Consider multiples of 4 spaces for line indents; 88 lines (21%) are
not.
  First few lines:
    • R/get_selfhyb_subseq.R#L9 function(x) { ...
    • ...
    • man/seedRegions.Rd#L28 seedRegions(hsSeqs[1:3], start=c(2,1,2) ...
ℹ See https://contributions.bioconductor.org/r-code.html
ℹ See styler package: https://cran.r-project.org/package=styler as described in
the BiocCheck vignette.
* Checking if package already exists in CRAN...
* Checking for bioc-devel mailing list subscription...
ℹ NOTE: Cannot determine whether maintainer is subscribed to the Bioc-Devel
mailing list (requires admin credentials). Subscribe here:
https://stat.ethz.ch/mailman/listinfo/bioc-devel
* Checking for support site registration...
✖ ERROR: Unable to find your email in the Support Site: HTTP 404 Not Found.
── BiocCheck v1.48.0 results ───────────────────────────────────────────────────
✖ 3 ERRORS | ⚠ 0 WARNINGS | ℹ 10 NOTES
ℹ See the microRNA.BiocCheck folder and run
  browseVignettes(package = 'BiocCheck')
  for details.