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### Running command:
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###   /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/Rscript -e "BiocCheck::BiocCheck('bluster_1.22.0.tar.gz','quit-with-status'=TRUE)"
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── Installing bluster ──────────────────────────────────────────────────────────
✔ Package installed successfully
── bluster session metadata ────────────────────────────────────────────────────
→ sourceDir: /tmp/RtmpOp2a33/file749903670af61/bluster
→ BiocVersion: 3.23
→ Package: bluster
→ PackageVersion: 1.22.0
→ BiocCheckDir: /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/bluster.BiocCheck
→ BiocCheckVersion: 1.48.0
→ sourceDir: /tmp/RtmpOp2a33/file749903670af61/bluster
→ installDir: /tmp/RtmpOp2a33/file7499027387fc9
→ isTarBall: TRUE
→ platform: unix
── Running BiocCheck on bluster ────────────────────────────────────────────────
* Checking for deprecated package usage...
* Checking for remote package usage...
* Checking for 'LazyData: true' usage...
* Checking version number...
* Checking for version number mismatch...
* Checking version number validity...
* Checking R version dependency...
* Checking package size...
* Checking individual file sizes...
* Checking biocViews...
* Checking that biocViews are present...
* Checking package type based on biocViews...
→ Software
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* Checking biocViews validity...
* Checking for recommended biocViews...
* Checking build system compatibility...
* Checking for proper Description: field...
* Checking if DESCRIPTION is well formatted...
* Checking for whitespace in DESCRIPTION field names...
* Checking that Package field matches directory/tarball name...
* Checking for Version: field...
ℹ NOTE: Consider adding the maintainer's ORCID iD in 'Authors@R' with
'comment=c(ORCID="...")'
* Checking License: for restrictive use...
* Checking for recommended DESCRIPTION fields...
ℹ NOTE: Provide 'URL', 'BugReports' field(s) in DESCRIPTION
* Checking for Bioconductor software dependencies...
ℹ Bioconductor dependencies found in Imports & Depends (30%).
* Checking for pinned package versions in DESCRIPTION...
* Checking for 'fnd' role in Authors@R...
ℹ NOTE: No 'fnd' role found in Authors@R. If the work is supported by a grant,
consider adding the 'fnd' role to the list of authors.
* Checking NAMESPACE...
* Checking .Rbuildignore...
* Checking for stray BiocCheck output folders...
* Checking vignette directory...
ℹ NOTE: Vignette(s) found with missing chunk labels
  Found in files:
    • clusterRows.Rmd
    • diagnostics.Rmd
* Checking package installation calls in R code...
* Checking for library/require of bluster...
* Checking coding practice...
ℹ NOTE: Avoid 1:...; use seq_len() or seq_along()
  Found in files:
    • DmmParam.R (line 73, column 26)
ℹ NOTE: Avoid 'cat' and 'print' outside of 'show' methods
  Found in files:
    • cat() in R/BlusterParam.R (line 41, column 9)
    • cat() in R/NNGraphParam.R (line 188, column 5)
    • cat() in R/NNGraphParam.R (line 192, column 5)
! WARNING: .Deprecated / .Defunct usage (found 3 times)
  • .Deprecated() in R/HclustParam.R (line 72, column 9)
  • .Deprecated() in R/HclustParam.R (line 75, column 9)
  • .Deprecated() in R/HclustParam.R (line 81, column 9)
* Checking parsed R code in R directory, examples, vignettes...
* Checking function lengths...
ℹ NOTE: The recommended function length is 50 lines or less. There are 2
functions greater than 50 lines.
  The longest 5 functions are:
    • pairwiseModularity() (R/pairwiseModularity.R): 77 lines
    • pairwiseRand() (R/pairwiseRand.R): 73 lines
* Checking man page documentation...
ℹ NOTE: Consider adding runnable examples to man pages that document exported
objects.
  • FixedNumberParam-class.Rd
* Checking package NEWS...
* Checking unit tests...
* Checking skip_on_bioc() in tests...
* Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source, and
vignette source...
ℹ NOTE: Consider shorter lines; 737 lines (18%) are > 80 characters long.
  First few lines:
    • R/AffinityParam.R#L3 #' Use affinity propagation from the \pk ...
    • ...
    • vignettes/diagnostics.Rmd#L298 This allows us to prune out combinations
    ...
ℹ NOTE: Consider multiples of 4 spaces for line indents; 12 lines (0%) are not.
  First few lines:
    • R/nestedClusters.R#L63 proportions=.untable(stats), ...
    • ...
    • R/nestedClusters.R#L75 ref.score=colSums(stats * tab) ...
ℹ See https://contributions.bioconductor.org/r-code.html
ℹ See styler package: https://cran.r-project.org/package=styler as described in
the BiocCheck vignette.
* Checking if package already exists in CRAN...
* Checking for bioc-devel mailing list subscription...
ℹ NOTE: Cannot determine whether maintainer is subscribed to the Bioc-Devel
mailing list (requires admin credentials). Subscribe here:
https://stat.ethz.ch/mailman/listinfo/bioc-devel
* Checking for support site registration...
ℹ Maintainer is registered at support site.
✖ ERROR: Add package to Watched Tags in your Support Site profile; visit
https://support.bioconductor.org/accounts/edit/profile
── BiocCheck v1.48.0 results ───────────────────────────────────────────────────
✖ 1 ERRORS | ⚠ 1 WARNINGS | ℹ 11 NOTES
ℹ See the bluster.BiocCheck folder and run
  browseVignettes(package = 'BiocCheck')
  for details.