Rapid builds (Linux only) of a subset of BioC 3.23<BR>Report updated every 6 hours

Hostname	OS	Arch (*)	R version	Installed pkgs
teran2	Linux (Ubuntu 24.04.4 LTS)	x86_64	4.6.0 RC (2026-04-22 r89945) -- "Because it was There"	923
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BIOCCHECK results for Rhdf5lib on teran2

To the developers/maintainers of the Rhdf5lib package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: Rhdf5lib

Version: 2.0.0

Command: /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/Rscript -e "BiocCheck::BiocCheck('Rhdf5lib_2.0.0.tar.gz','quit-with-status'=TRUE)"

StartedAt: 2026-05-07 15:44:37 -0400 (Thu, 07 May 2026)

EndedAt: 2026-05-07 15:47:54 -0400 (Thu, 07 May 2026)

EllapsedTime: 196.6 seconds

RetCode: 1

Status: ERROR

CheckDir: None

Warnings: NA

Command output

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###
### Running command:
###
###   /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/Rscript -e "BiocCheck::BiocCheck('Rhdf5lib_2.0.0.tar.gz','quit-with-status'=TRUE)"
###
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── Installing Rhdf5lib ─────────────────────────────────────────────────────────
✔ Package installed successfully
── Rhdf5lib session metadata ───────────────────────────────────────────────────
→ sourceDir: /tmp/RtmpgDVWds/file8b2447eaf49c5/Rhdf5lib
→ BiocVersion: 3.23
→ Package: Rhdf5lib
→ PackageVersion: 2.0.0
→ BiocCheckDir: /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/Rhdf5lib.BiocCheck
→ BiocCheckVersion: 1.48.0
→ sourceDir: /tmp/RtmpgDVWds/file8b2447eaf49c5/Rhdf5lib
→ installDir: /tmp/RtmpgDVWds/file8b244c5508f7
→ isTarBall: TRUE
→ platform: unix
── Running BiocCheck on Rhdf5lib ───────────────────────────────────────────────
* Checking for deprecated package usage...
* Checking for remote package usage...
* Checking for 'LazyData: true' usage...
* Checking version number...
* Checking for version number mismatch...
* Checking version number validity...
* Checking R version dependency...
ℹ NOTE: Update R version dependency from 4.2.0 to 4.6.0
* Checking package size...
* Checking individual file sizes...
* Checking biocViews...
* Checking that biocViews are present...
* Checking package type based on biocViews...
→ Software
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* Checking biocViews validity...
* Checking for recommended biocViews...
* Checking build system compatibility...
* Checking for proper Description: field...
* Checking if DESCRIPTION is well formatted...
* Checking for whitespace in DESCRIPTION field names...
* Checking that Package field matches directory/tarball name...
* Checking for Version: field...
* Checking License: for restrictive use...
* Checking for recommended DESCRIPTION fields...
* Checking for Bioconductor software dependencies...
ℹ NOTE: No Bioconductor dependencies detected. Note that some infrastructure
packages may not have Bioconductor dependencies. For more information, reach
out to the Bioconductor community and/or consider a CRAN submission.
* Checking for pinned package versions in DESCRIPTION...
* Checking for 'fnd' role in Authors@R...
ℹ NOTE: No 'fnd' role found in Authors@R. If the work is supported by a grant,
consider adding the 'fnd' role to the list of authors.
* Checking NAMESPACE...
* Checking .Rbuildignore...
* Checking for stray BiocCheck output folders...
* Checking vignette directory...
* Checking package installation calls in R code...
* Checking for library/require of Rhdf5lib...
* Checking coding practice...
ℹ NOTE: Avoid 'cat' and 'print' outside of 'show' methods
  Found in files:
    • cat() in R/zzz.R (line 90, column 3)
* Checking parsed R code in R directory, examples, vignettes...
* Checking function lengths...
ℹ NOTE: The recommended function length is 50 lines or less. There is 1
function greater than 50 lines.
  The longest 5 functions are:
    • pkgconfig() (R/zzz.R): 72 lines
* Checking man page documentation...
* Checking package NEWS...
* Checking unit tests...
* Checking skip_on_bioc() in tests...
* Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source, and
vignette source...
ℹ NOTE: Consider shorter lines; 24 lines (9%) are > 80 characters long.
  First few lines:
    • R/zzz.R#L19 #' @rawNamespace if(tools:::.OStype() == ...
    • ...
    • vignettes/Rhdf5lib.Rmd#L72 MLS was supported by the BMBF-funded Hei ...
ℹ NOTE: Consider multiples of 4 spaces for line indents; 75 lines (29%) are
not.
  First few lines:
    • R/zzz.R#L21 opt <- match.arg(opt) ...
    • ...
    • R/zzz.R#L164 return(libs) ...
ℹ See https://contributions.bioconductor.org/r-code.html
ℹ See styler package: https://cran.r-project.org/package=styler as described in
the BiocCheck vignette.
* Checking if package already exists in CRAN...
* Checking for bioc-devel mailing list subscription...
ℹ NOTE: Cannot determine whether maintainer is subscribed to the Bioc-Devel
mailing list (requires admin credentials). Subscribe here:
https://stat.ethz.ch/mailman/listinfo/bioc-devel
* Checking for support site registration...
✖ ERROR: Unable to find your email in the Support Site: HTTP 404 Not Found.
── BiocCheck v1.48.0 results ───────────────────────────────────────────────────
✖ 1 ERRORS | ⚠ 0 WARNINGS | ℹ 8 NOTES
ℹ See the Rhdf5lib.BiocCheck folder and run
  browseVignettes(package = 'BiocCheck')
  for details.