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### Running command:
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###   /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/Rscript -e "BiocCheck::BiocCheck('MassSpecWavelet_1.78.0.tar.gz','quit-with-status'=TRUE)"
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── Installing MassSpecWavelet ──────────────────────────────────────────────────
✔ Package installed successfully
── MassSpecWavelet session metadata ────────────────────────────────────────────
→ sourceDir: /tmp/Rtmp94cwI1/file7e04a7618d015/MassSpecWavelet
→ BiocVersion: 3.23
→ Package: MassSpecWavelet
→ PackageVersion: 1.78.0
→ BiocCheckDir: /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/MassSpecWavelet.BiocCheck
→ BiocCheckVersion: 1.48.0
→ sourceDir: /tmp/Rtmp94cwI1/file7e04a7618d015/MassSpecWavelet
→ installDir: /tmp/Rtmp94cwI1/file7e04aaf8c282
→ isTarBall: TRUE
→ platform: unix
── Running BiocCheck on MassSpecWavelet ────────────────────────────────────────
* Checking for deprecated package usage...
* Checking for remote package usage...
* Checking for 'LazyData: true' usage...
* Checking version number...
* Checking for version number mismatch...
* Checking version number validity...
* Checking R version dependency...
* Checking package size...
* Checking individual file sizes...
* Checking biocViews...
* Checking that biocViews are present...
* Checking package type based on biocViews...
→ Software
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* Checking biocViews validity...
* Checking for recommended biocViews...
ℹ NOTE: Consider adding these automatically suggested biocViews: Alignment
ℹ Search 'biocViews' at https://contributions.bioconductor.org
* Checking build system compatibility...
* Checking for proper Description: field...
* Checking if DESCRIPTION is well formatted...
* Checking for whitespace in DESCRIPTION field names...
* Checking that Package field matches directory/tarball name...
* Checking for Version: field...
* Checking License: for restrictive use...
* Checking for recommended DESCRIPTION fields...
* Checking for Bioconductor software dependencies...
! WARNING: No Bioconductor dependencies detected. Note that some infrastructure
packages may not have Bioconductor dependencies. For more information, reach
out to the Bioconductor community and/or consider a CRAN submission.
* Checking for pinned package versions in DESCRIPTION...
* Checking for 'fnd' role in Authors@R...
ℹ NOTE: No 'fnd' role found in Authors@R. If the work is supported by a grant,
consider adding the 'fnd' role to the list of authors.
* Checking NAMESPACE...
* Checking .Rbuildignore...
* Checking for stray BiocCheck output folders...
* Checking vignette directory...
ℹ NOTE: Vignette(s) found with missing chunk labels
  Found in files:
    • FindingLocalMaxima.Rmd
    • MassSpecWavelet.Rmd
* Checking package installation calls in R code...
* Checking for library/require of MassSpecWavelet...
* Checking coding practice...
ℹ NOTE: Avoid sapply(); use vapply()
  Found in files:
    • R/getRidge.R (line 151, column 27)
    • ...
    • R/identifyMajorPeaks.R (line 171, column 14)
ℹ NOTE: Avoid 1:...; use seq_len() or seq_along()
  Found in files:
    • cwt.R (line 126, column 78)
    • ...
    • tuneInPeakInfo.R (line 120, column 60)
ℹ NOTE: Avoid the use of 'paste' in condition signals
  Found in files:
    • R/cwt.R (line 289, column 39)
* Checking parsed R code in R directory, examples, vignettes...
* Checking function lengths...
ℹ NOTE: The recommended function length is 50 lines or less. There are 8
functions greater than 50 lines.
  The longest 5 functions are:
    • identifyMajorPeaks() (R/identifyMajorPeaks.R): 169 lines
    • ...
    • peakDetectionCWT() (R/peakDetectionCWT.R): 84 lines
* Checking man page documentation...
* Checking package NEWS...
* Checking unit tests...
* Checking skip_on_bioc() in tests...
* Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source, and
vignette source...
ℹ NOTE: Consider shorter lines; 192 lines (8%) are > 80 characters long.
  First few lines:
    • R/cwt.R#L6 #' The default mother wavelet is a Mexic ...
    • ...
    • vignettes/MassSpecWavelet.Rmd#L252 We would like to thanks the users and
    re ...
ℹ NOTE: Consider 4 spaces instead of tabs; 35 lines (1%) contain tabs.
  First few lines:
    • R/cwt.R#L235 cat(format(x, ...), "\n") ...
    • ...
    • R/identifyMajorPeaks.R#L315 noiseLevel.k ...
ℹ NOTE: Consider multiples of 4 spaces for line indents; 49 lines (2%) are not.
  First few lines:
    • R/cwt.R#L112 method = ...
    • ...
    • vignettes/MassSpecWavelet.Rmd#L241 ylab='Intensity' ...
ℹ See https://contributions.bioconductor.org/r-code.html
ℹ See styler package: https://cran.r-project.org/package=styler as described in
the BiocCheck vignette.
* Checking if package already exists in CRAN...
* Checking for bioc-devel mailing list subscription...
ℹ NOTE: Cannot determine whether maintainer is subscribed to the Bioc-Devel
mailing list (requires admin credentials). Subscribe here:
https://stat.ethz.ch/mailman/listinfo/bioc-devel
* Checking for support site registration...
ℹ Maintainer is registered at support site.
ℹ Package is in the Support Site Watched Tags.
── BiocCheck v1.48.0 results ───────────────────────────────────────────────────
✖ 0 ERRORS | ⚠ 1 WARNINGS | ℹ 11 NOTES
ℹ See the MassSpecWavelet.BiocCheck folder and run
  browseVignettes(package = 'BiocCheck')
  for details.