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### Running command:
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###   /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/Rscript -e "BiocCheck::BiocCheck('DynDoc_1.90.0.tar.gz','quit-with-status'=TRUE)"
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── Installing DynDoc ───────────────────────────────────────────────────────────
✔ Package installed successfully
── DynDoc session metadata ─────────────────────────────────────────────────────
→ sourceDir: /tmp/RtmpHesddP/file775da61bc1bcf/DynDoc
→ BiocVersion: 3.23
→ Package: DynDoc
→ PackageVersion: 1.90.0
→ BiocCheckDir: /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/DynDoc.BiocCheck
→ BiocCheckVersion: 1.48.0
→ sourceDir: /tmp/RtmpHesddP/file775da61bc1bcf/DynDoc
→ installDir: /tmp/RtmpHesddP/file775daa1e0e15
→ isTarBall: TRUE
→ platform: unix
── Running BiocCheck on DynDoc ─────────────────────────────────────────────────
* Checking for deprecated package usage...
* Checking for remote package usage...
* Checking for 'LazyData: true' usage...
* Checking version number...
* Checking for version number mismatch...
* Checking version number validity...
* Checking R version dependency...
* Checking package size...
* Checking individual file sizes...
* Checking biocViews...
* Checking that biocViews are present...
* Checking package type based on biocViews...
→ Software
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* Checking biocViews validity...
* Checking for recommended biocViews...
No vignettes found.
* Checking build system compatibility...
* Checking for proper Description: field...
* Checking if DESCRIPTION is well formatted...
* Checking for whitespace in DESCRIPTION field names...
* Checking that Package field matches directory/tarball name...
* Checking for Version: field...
✖ ERROR: Remove Maintainer field. Use Authors@R [cre] designation.
* Checking License: for restrictive use...
* Checking for recommended DESCRIPTION fields...
ℹ NOTE: Provide 'URL', 'BugReports' field(s) in DESCRIPTION
* Checking for Bioconductor software dependencies...
ℹ NOTE: No Bioconductor dependencies detected. Note that some infrastructure
packages may not have Bioconductor dependencies. For more information, reach
out to the Bioconductor community and/or consider a CRAN submission.
* Checking for pinned package versions in DESCRIPTION...
* Checking for 'fnd' role in Authors@R...
ℹ NOTE: No 'fnd' role found in Authors@R. If the work is supported by a grant,
consider adding the 'fnd' role to the list of authors.
* Checking NAMESPACE...
* Checking .Rbuildignore...
* Checking for stray BiocCheck output folders...
* Checking vignette directory...
✖ ERROR: No 'vignettes' directory.
* Checking package installation calls in R code...
* Checking for library/require of DynDoc...
! WARNING: Avoid the use of 'library' or 'require' in R code
  Found in files:
    • require() in R/zzz.R (line 1, column 39)
* Checking coding practice...
ℹ NOTE: Avoid sapply(); use vapply()
  Found in files:
    • R/vigList.R (line 14, column 26)
ℹ NOTE: Avoid 1:...; use seq_len() or seq_along()
  Found in files:
    • tangleToR.R (line 113, column 21)
    • vigList.R (line 219, column 19)
    • vignetteCode.R (line 116, column 17)
ℹ NOTE: Avoid 'cat' and 'print' outside of 'show' methods
  Found in files:
    • cat() in R/tangleToR.R (line 116, column 13)
    • ...
    • print() in R/vignetteCode.R (line 131, column 13)
ℹ NOTE: Avoid using '=' for assignment and use '<-' instead
  Found in files:
    • R/vigList.R (line 111, column 13)
    • R/vigList.R (line 113, column 13)
* Checking parsed R code in R directory, examples, vignettes...
* Checking function lengths...
ℹ NOTE: The recommended function length is 50 lines or less. There are 2
functions greater than 50 lines.
  The longest 5 functions are:
    • getVigInfo() (R/vigList.R): 68 lines
    • getVignette() (R/vignetteClass.R): 57 lines
* Checking man page documentation...
! WARNING: Empty or missing \value sections found in man page(s).
  Found in files:
    • man/getPkgVigList.Rd
    • man/getVignetteCode.Rd
    • man/getVignetteHeader.Rd
✖ ERROR: At least 80% of man pages documenting exported objects must have
runnable examples.
  The following pages do not:
    • DynDoc-class.Rd
    • ...
    • vignetteCode-class.Rd
ℹ NOTE: Usage of dontrun / donttest tags found in man page examples. 9% of man
pages use at least one of these tags.
  Found in files:
    • getPkgVigList.Rd
ℹ NOTE: Use donttest instead of dontrun.
  Found in files:
    • getPkgVigList.Rd
* Checking package NEWS...
ℹ NOTE: Consider adding a NEWS file, so your package news will be included in
Bioconductor release announcements.
* Checking unit tests...
ℹ NOTE: Consider adding unit tests. We strongly encourage them. See
https://contributions.bioconductor.org/tests.html
* Checking skip_on_bioc() in tests...
* Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source, and
vignette source...
ℹ NOTE: Consider shorter lines; 7 lines (1%) are > 80 characters long.
  First few lines:
    • DynDoc/NAMESPACE#L3 exportClasses(chunkList, codeChunk, DynD ...
    • ...
    • man/getVignetteCode.Rd#L33 \seealso{\code{\link{Sweave}},\code{\lin ...
ℹ NOTE: Consider 4 spaces instead of tabs; 15 lines (1%) contain tabs.
  First few lines:
    • man/chunkList-class.Rd#L55 pos="numeric")}: Evaluates the code chu ...
    • ...
    • man/vignetteCode-class.Rd#L71 "vignetteCode",pos="numeric", value="ch ...
ℹ NOTE: Consider multiples of 4 spaces for line indents; 295 lines (22%) are
not.
  First few lines:
    • R/DynDoc.R#L18 standardGeneric("inde ...
    • ...
    • man/vignetteCode-class.Rd#L80 \code{\link{editVignetteCode}}, \code{ ...
ℹ See https://contributions.bioconductor.org/r-code.html
ℹ See styler package: https://cran.r-project.org/package=styler as described in
the BiocCheck vignette.
* Checking if package already exists in CRAN...
* Checking for bioc-devel mailing list subscription...
ℹ NOTE: Cannot determine whether maintainer is subscribed to the Bioc-Devel
mailing list (requires admin credentials). Subscribe here:
https://stat.ethz.ch/mailman/listinfo/bioc-devel
* Checking for support site registration...
ℹ Maintainer email is ok.
── BiocCheck v1.48.0 results ───────────────────────────────────────────────────
✖ 3 ERRORS | ⚠ 2 WARNINGS | ℹ 16 NOTES
ℹ See the DynDoc.BiocCheck folder and run
  browseVignettes(package = 'BiocCheck')
  for details.