Back to Long Tests report for BioC 3.22

This page was generated on 2026-03-21 23:55 -0400 (Sat, 21 Mar 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 4892
merida1macOS 12.7.6 Montereyx86_644.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 4686
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 5/31HostnameOS / ArchCHECK
biodbChebi 1.16.0  (landing page)
Pierrick Roger
Snapshot Date: 2026-03-21 09:55 -0400 (Sat, 21 Mar 2026)
git_url: https://git.bioconductor.org/packages/biodbChebi
git_branch: RELEASE_3_22
git_last_commit: 28c1b2d
git_last_commit_date: 2025-10-29 11:12:25 -0400 (Wed, 29 Oct 2025)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  ERROR  
merida1macOS 12.7.6 Monterey / x86_64  ERROR  

CHECK results for biodbChebi on merida1

To the developers/maintainers of the biodbChebi package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: biodbChebi
Version: 1.16.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.16.0.tar.gz
StartedAt: 2026-03-21 16:01:20 -0400 (Sat, 21 Mar 2026)
EndedAt: 2026-03-21 16:03:01 -0400 (Sat, 21 Mar 2026)
EllapsedTime: 100.7 seconds
RetCode: 1
Status:   ERROR  
CheckDir: biodbChebi.Rcheck
Warnings: NA

Tests output

biodbChebi.Rcheck/tests/testthat.Rout.fail


R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20

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> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbChebi)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbChebi")
biodb.INFO [2026-03-21 16:02:14.088][biodb::testContext]
biodb.INFO [2026-03-21 16:02:14.092][biodb::testContext] ********************************************************************************
biodb.INFO [2026-03-21 16:02:14.093][biodb::testContext] Test context - Generic long tests
biodb.INFO [2026-03-21 16:02:14.094][biodb::testContext] ********************************************************************************
biodb.INFO [2026-03-21 16:02:14.095][biodb::testContext]
biodb.INFO [2026-03-21 16:02:14.102][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.18.0.
biodb.DEBUG[2026-03-21 16:02:14.104][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2026-03-21 16:02:14.113][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2026-03-21 16:02:14.114][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2026-03-21 16:02:14.115][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2026-03-21 16:02:14.117][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-03-21 16:02:14.118][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-03-21 16:02:14.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-03-21 16:02:14.120][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2026-03-21 16:02:14.145][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2026-03-21 16:02:14.146][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-03-21 16:02:14.147][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-03-21 16:02:14.149][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-03-21 16:02:14.150][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2026-03-21 16:02:14.151][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2026-03-21 16:02:14.152][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-03-21 16:02:14.153][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-03-21 16:02:14.155][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-03-21 16:02:14.156][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2026-03-21 16:02:14.157][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2026-03-21 16:02:14.158][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2026-03-21 16:02:14.160][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-03-21 16:02:14.161][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-03-21 16:02:14.162][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-03-21 16:02:14.163][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2026-03-21 16:02:14.164][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2026-03-21 16:02:14.166][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2026-03-21 16:02:14.167][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-03-21 16:02:14.168][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-03-21 16:02:14.169][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-03-21 16:02:14.170][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2026-03-21 16:02:14.172][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2026-03-21 16:02:14.173][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-03-21 16:02:14.174][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-03-21 16:02:14.175][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-03-21 16:02:14.176][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2026-03-21 16:02:14.178][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2026-03-21 16:02:14.179][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2026-03-21 16:02:14.180][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-03-21 16:02:14.181][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-03-21 16:02:14.182][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-03-21 16:02:14.184][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2026-03-21 16:02:14.185][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2026-03-21 16:02:14.186][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-03-21 16:02:14.187][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-03-21 16:02:14.188][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-03-21 16:02:14.190][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2026-03-21 16:02:14.191][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2026-03-21 16:02:14.192][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2026-03-21 16:02:14.193][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-03-21 16:02:14.194][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-03-21 16:02:14.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-03-21 16:02:14.197][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2026-03-21 16:02:14.199][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2026-03-21 16:02:14.200][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2026-03-21 16:02:14.201][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2026-03-21 16:02:14.203][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2026-03-21 16:02:14.204][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2026-03-21 16:02:14.205][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-03-21 16:02:14.206][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-03-21 16:02:14.208][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-03-21 16:02:14.209][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2026-03-21 16:02:14.210][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2026-03-21 16:02:14.212][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-03-21 16:02:14.213][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-03-21 16:02:14.214][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-03-21 16:02:14.215][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2026-03-21 16:02:14.217][self$set] Set key entries.sep to "|".
biodb.DEBUG[2026-03-21 16:02:14.218][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-03-21 16:02:14.219][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-03-21 16:02:14.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-03-21 16:02:14.221][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2026-03-21 16:02:14.223][self$set] Set key offline to FALSE.
biodb.DEBUG[2026-03-21 16:02:14.224][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-03-21 16:02:14.225][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-03-21 16:02:14.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-03-21 16:02:14.228][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2026-03-21 16:02:14.235][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2026-03-21 16:02:14.236][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2026-03-21 16:02:14.237][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-03-21 16:02:14.238][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-03-21 16:02:14.240][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-03-21 16:02:14.241][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2026-03-21 16:02:14.242][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2026-03-21 16:02:14.253][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2026-03-21 16:02:14.255][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-03-21 16:02:14.256][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-03-21 16:02:14.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-03-21 16:02:14.259][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2026-03-21 16:02:14.260][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2026-03-21 16:02:14.261][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2026-03-21 16:02:14.262][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-03-21 16:02:14.263][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-03-21 16:02:14.265][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-03-21 16:02:14.269][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2026-03-21 16:02:14.312][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2026-03-21 16:02:14.334][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2026-03-21 16:02:14.335][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2026-03-21 16:02:14.337][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2026-03-21 16:02:14.338][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2026-03-21 16:02:14.339][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2026-03-21 16:02:14.340][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2026-03-21 16:02:14.342][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2026-03-21 16:02:14.343][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2026-03-21 16:02:14.344][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2026-03-21 16:02:14.346][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2026-03-21 16:02:14.347][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2026-03-21 16:02:14.348][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2026-03-21 16:02:14.349][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2026-03-21 16:02:14.351][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2026-03-21 16:02:14.352][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2026-03-21 16:02:14.352][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2026-03-21 16:02:14.352][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2026-03-21 16:02:14.352][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2026-03-21 16:02:14.352][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2026-03-21 16:02:14.353][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2026-03-21 16:02:14.355][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2026-03-21 16:02:14.356][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2026-03-21 16:02:14.357][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2026-03-21 16:02:14.358][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2026-03-21 16:02:14.360][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2026-03-21 16:02:14.361][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2026-03-21 16:02:14.362][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2026-03-21 16:02:14.363][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2026-03-21 16:02:14.365][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2026-03-21 16:02:14.366][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2026-03-21 16:02:14.367][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2026-03-21 16:02:14.369][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2026-03-21 16:02:14.371][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2026-03-21 16:02:14.372][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2026-03-21 16:02:14.374][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2026-03-21 16:02:14.375][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2026-03-21 16:02:14.376][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2026-03-21 16:02:14.377][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2026-03-21 16:02:14.379][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2026-03-21 16:02:14.380][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2026-03-21 16:02:14.381][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2026-03-21 16:02:14.383][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2026-03-21 16:02:14.384][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2026-03-21 16:02:14.385][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2026-03-21 16:02:14.386][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2026-03-21 16:02:14.388][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2026-03-21 16:02:14.389][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2026-03-21 16:02:14.390][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2026-03-21 16:02:14.390][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2026-03-21 16:02:14.390][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2026-03-21 16:02:14.390][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2026-03-21 16:02:14.390][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2026-03-21 16:02:14.392][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2026-03-21 16:02:14.393][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2026-03-21 16:02:14.394][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2026-03-21 16:02:14.395][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2026-03-21 16:02:14.397][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2026-03-21 16:02:14.398][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2026-03-21 16:02:14.399][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2026-03-21 16:02:14.400][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2026-03-21 16:02:14.402][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2026-03-21 16:02:14.403][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2026-03-21 16:02:14.404][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2026-03-21 16:02:14.405][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2026-03-21 16:02:14.407][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2026-03-21 16:02:14.409][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2026-03-21 16:02:14.410][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2026-03-21 16:02:14.412][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2026-03-21 16:02:14.413][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2026-03-21 16:02:14.414][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2026-03-21 16:02:14.415][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2026-03-21 16:02:14.417][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2026-03-21 16:02:14.418][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2026-03-21 16:02:14.419][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2026-03-21 16:02:14.421][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2026-03-21 16:02:14.422][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2026-03-21 16:02:14.423][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2026-03-21 16:02:14.424][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2026-03-21 16:02:14.426][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2026-03-21 16:02:14.427][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2026-03-21 16:02:14.428][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2026-03-21 16:02:14.429][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2026-03-21 16:02:14.431][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2026-03-21 16:02:14.432][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2026-03-21 16:02:14.433][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2026-03-21 16:02:14.435][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2026-03-21 16:02:14.436][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2026-03-21 16:02:14.437][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2026-03-21 16:02:14.438][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2026-03-21 16:02:14.440][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2026-03-21 16:02:14.441][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2026-03-21 16:02:14.442][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2026-03-21 16:02:14.443][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2026-03-21 16:02:14.445][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2026-03-21 16:02:14.447][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2026-03-21 16:02:14.449][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2026-03-21 16:02:14.450][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2026-03-21 16:02:14.452][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2026-03-21 16:02:14.453][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2026-03-21 16:02:14.455][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2026-03-21 16:02:14.456][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2026-03-21 16:02:14.458][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2026-03-21 16:02:14.459][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2026-03-21 16:02:14.460][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2026-03-21 16:02:14.462][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2026-03-21 16:02:14.463][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2026-03-21 16:02:14.465][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2026-03-21 16:02:14.466][self$setPropertyValue] Setting property "parsing.expr" to "<NULL>".
biodb.DEBUG[2026-03-21 16:02:14.467][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2026-03-21 16:02:14.469][self$setPropertyValue] Setting property "searchable.fields" to "<NULL>".
biodb.DEBUG[2026-03-21 16:02:14.471][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2026-03-21 16:02:14.472][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2026-03-21 16:02:14.473][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2026-03-21 16:02:14.475][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2026-03-21 16:02:14.476][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2026-03-21 16:02:14.477][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2026-03-21 16:02:14.478][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2026-03-21 16:02:14.480][self$setPropertyValue] Setting property "urls" to "<NULL>".
biodb.DEBUG[2026-03-21 16:02:14.481][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2026-03-21 16:02:14.482][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2026-03-21 16:02:14.483][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2026-03-21 16:02:14.485][self$setPropertyValue] Setting property "xml.ns" to "<NULL>".
biodb.DEBUG[2026-03-21 16:02:14.494][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2026-03-21 16:02:14.495][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2026-03-21 16:02:14.496][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-03-21 16:02:14.497][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-03-21 16:02:14.498][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-03-21 16:02:14.499][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-03-21 16:02:14.501][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-03-21 16:02:14.502][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-03-21 16:02:14.503][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-03-21 16:02:14.504][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-03-21 16:02:14.505][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-03-21 16:02:14.506][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-03-21 16:02:14.507][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-03-21 16:02:14.508][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-03-21 16:02:14.509][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-03-21 16:02:14.511][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-03-21 16:02:14.512][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-03-21 16:02:14.513][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-03-21 16:02:14.514][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-03-21 16:02:14.515][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-03-21 16:02:14.516][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-03-21 16:02:14.517][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-03-21 16:02:14.518][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-03-21 16:02:14.520][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-03-21 16:02:14.521][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-03-21 16:02:14.522][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-03-21 16:02:14.523][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-03-21 16:02:14.524][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-03-21 16:02:14.525][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-03-21 16:02:14.527][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-03-21 16:02:14.528][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-03-21 16:02:14.529][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-03-21 16:02:14.530][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-03-21 16:02:14.531][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-03-21 16:02:14.532][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-03-21 16:02:14.533][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-03-21 16:02:14.535][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-03-21 16:02:14.536][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-03-21 16:02:14.537][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-03-21 16:02:14.538][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-03-21 16:02:14.539][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-03-21 16:02:14.540][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-03-21 16:02:14.541][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-03-21 16:02:14.542][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-03-21 16:02:14.544][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-03-21 16:02:14.545][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-03-21 16:02:14.546][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-03-21 16:02:14.547][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-03-21 16:02:14.548][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-03-21 16:02:14.549][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-03-21 16:02:14.550][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-03-21 16:02:14.552][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-03-21 16:02:14.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-03-21 16:02:14.554][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-03-21 16:02:14.555][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-03-21 16:02:14.556][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-03-21 16:02:14.557][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-03-21 16:02:14.558][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-03-21 16:02:14.559][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-03-21 16:02:14.561][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-03-21 16:02:14.562][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-03-21 16:02:14.563][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-03-21 16:02:14.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-03-21 16:02:14.565][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-03-21 16:02:14.566][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-03-21 16:02:14.567][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-03-21 16:02:14.569][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-03-21 16:02:14.570][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-03-21 16:02:14.571][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-03-21 16:02:14.572][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-03-21 16:02:14.573][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-03-21 16:02:14.574][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-03-21 16:02:14.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-03-21 16:02:14.576][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-03-21 16:02:14.577][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-03-21 16:02:14.579][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-03-21 16:02:14.580][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-03-21 16:02:14.581][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-03-21 16:02:14.583][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-03-21 16:02:14.584][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-03-21 16:02:14.585][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-03-21 16:02:14.586][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-03-21 16:02:14.587][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-03-21 16:02:14.589][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2026-03-21 16:02:14.593][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2026-03-21 16:02:14.595][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2026-03-21 16:02:14.597][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2026-03-21 16:02:14.598][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2026-03-21 16:02:14.600][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2026-03-21 16:02:14.602][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2026-03-21 16:02:14.604][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2026-03-21 16:02:14.605][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2026-03-21 16:02:14.607][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2026-03-21 16:02:14.609][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2026-03-21 16:02:14.611][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2026-03-21 16:02:14.612][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2026-03-21 16:02:14.614][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2026-03-21 16:02:14.616][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2026-03-21 16:02:14.618][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2026-03-21 16:02:14.619][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2026-03-21 16:02:14.621][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2026-03-21 16:02:14.623][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2026-03-21 16:02:14.625][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2026-03-21 16:02:14.627][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2026-03-21 16:02:14.628][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2026-03-21 16:02:14.630][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2026-03-21 16:02:14.632][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2026-03-21 16:02:14.634][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2026-03-21 16:02:14.635][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2026-03-21 16:02:14.637][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2026-03-21 16:02:14.639][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2026-03-21 16:02:14.641][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2026-03-21 16:02:14.642][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2026-03-21 16:02:14.644][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2026-03-21 16:02:14.646][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2026-03-21 16:02:14.648][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2026-03-21 16:02:14.650][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2026-03-21 16:02:14.651][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2026-03-21 16:02:14.653][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2026-03-21 16:02:14.655][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2026-03-21 16:02:14.657][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2026-03-21 16:02:14.658][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2026-03-21 16:02:14.660][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2026-03-21 16:02:14.662][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2026-03-21 16:02:14.664][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2026-03-21 16:02:14.665][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2026-03-21 16:02:14.667][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2026-03-21 16:02:14.669][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2026-03-21 16:02:14.671][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2026-03-21 16:02:14.672][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2026-03-21 16:02:14.674][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2026-03-21 16:02:14.676][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2026-03-21 16:02:14.677][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2026-03-21 16:02:14.679][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2026-03-21 16:02:14.681][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2026-03-21 16:02:14.683][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2026-03-21 16:02:14.685][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2026-03-21 16:02:14.686][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2026-03-21 16:02:14.688][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2026-03-21 16:02:14.690][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2026-03-21 16:02:14.691][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2026-03-21 16:02:14.693][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2026-03-21 16:02:14.695][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2026-03-21 16:02:14.697][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2026-03-21 16:02:14.698][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2026-03-21 16:02:14.700][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2026-03-21 16:02:14.702][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2026-03-21 16:02:14.704][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2026-03-21 16:02:14.706][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2026-03-21 16:02:14.707][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2026-03-21 16:02:14.709][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2026-03-21 16:02:14.711][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2026-03-21 16:02:14.713][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2026-03-21 16:02:14.714][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2026-03-21 16:02:14.716][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2026-03-21 16:02:14.718][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2026-03-21 16:02:14.719][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2026-03-21 16:02:14.721][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2026-03-21 16:02:14.727][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2026-03-21 16:02:14.729][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2026-03-21 16:02:14.731][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2026-03-21 16:02:14.733][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2026-03-21 16:02:14.735][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2026-03-21 16:02:14.736][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2026-03-21 16:02:14.738][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2026-03-21 16:02:14.740][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2026-03-21 16:02:14.747][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2026-03-21 16:02:14.749][initialize] This is biodb version 1.18.0.
biodb.DEBUG[2026-03-21 16:02:14.752][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2026-03-21 16:02:14.754][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2026-03-21 16:02:14.755][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-03-21 16:02:14.756][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2026-03-21 16:02:14.757][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-03-21 16:02:14.763][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-03-21 16:02:14.764][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2026-03-21 16:02:14.765][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-03-21 16:02:14.767][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-03-21 16:02:14.768][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-03-21 16:02:14.769][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-03-21 16:02:14.770][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-03-21 16:02:14.771][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-03-21 16:02:14.772][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2026-03-21 16:02:14.773][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-03-21 16:02:14.774][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-03-21 16:02:14.775][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-03-21 16:02:14.776][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-03-21 16:02:14.778][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-03-21 16:02:14.779][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-03-21 16:02:14.780][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2026-03-21 16:02:14.781][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-03-21 16:02:14.782][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-03-21 16:02:14.783][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-03-21 16:02:14.784][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-03-21 16:02:14.785][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-03-21 16:02:14.787][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-03-21 16:02:14.788][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2026-03-21 16:02:14.789][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-03-21 16:02:14.790][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-03-21 16:02:14.791][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-03-21 16:02:14.792][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-03-21 16:02:14.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-03-21 16:02:14.795][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-03-21 16:02:14.796][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2026-03-21 16:02:14.797][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-03-21 16:02:14.798][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-03-21 16:02:14.799][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-03-21 16:02:14.801][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-03-21 16:02:14.802][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-03-21 16:02:14.803][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-03-21 16:02:14.804][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2026-03-21 16:02:14.805][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-03-21 16:02:14.806][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-03-21 16:02:14.807][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-03-21 16:02:14.808][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-03-21 16:02:14.810][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-03-21 16:02:14.811][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-03-21 16:02:14.812][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2026-03-21 16:02:14.813][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-03-21 16:02:14.814][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-03-21 16:02:14.815][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-03-21 16:02:14.816][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-03-21 16:02:14.818][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-03-21 16:02:14.819][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-03-21 16:02:14.820][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2026-03-21 16:02:14.821][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-03-21 16:02:14.822][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-03-21 16:02:14.823][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-03-21 16:02:14.824][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-03-21 16:02:14.825][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-03-21 16:02:14.827][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-03-21 16:02:14.828][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2026-03-21 16:02:14.829][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-03-21 16:02:14.830][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-03-21 16:02:14.831][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-03-21 16:02:14.832][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-03-21 16:02:14.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-03-21 16:02:14.835][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-03-21 16:02:14.836][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2026-03-21 16:02:14.837][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-03-21 16:02:14.838][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-03-21 16:02:14.839][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-03-21 16:02:14.840][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-03-21 16:02:14.841][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-03-21 16:02:14.842][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-03-21 16:02:14.844][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2026-03-21 16:02:14.845][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-03-21 16:02:14.846][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-03-21 16:02:14.847][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-03-21 16:02:14.848][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-03-21 16:02:14.849][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-03-21 16:02:14.850][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-03-21 16:02:14.851][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2026-03-21 16:02:14.853][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-03-21 16:02:14.854][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-03-21 16:02:14.855][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-03-21 16:02:14.856][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-03-21 16:02:14.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-03-21 16:02:14.858][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-03-21 16:02:14.859][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2026-03-21 16:02:14.860][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-03-21 16:02:14.862][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-03-21 16:02:14.863][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-03-21 16:02:14.864][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-03-21 16:02:14.865][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-03-21 16:02:14.866][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-03-21 16:02:14.867][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2026-03-21 16:02:14.868][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-03-21 16:02:14.869][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-03-21 16:02:14.871][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-03-21 16:02:14.872][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-03-21 16:02:14.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-03-21 16:02:14.874][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-03-21 16:02:14.875][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2026-03-21 16:02:14.876][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-03-21 16:02:14.877][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-03-21 16:02:14.878][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-03-21 16:02:14.880][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-03-21 16:02:14.881][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-03-21 16:02:14.882][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2026-03-21 16:02:14.883][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2026-03-21 16:02:14.884][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-03-21 16:02:14.885][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2026-03-21 16:02:14.887][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-03-21 16:02:14.888][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2026-03-21 16:02:14.889][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2026-03-21 16:02:14.891][biodb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/definitions.yml".
biodb.DEBUG[2026-03-21 16:02:14.904][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2026-03-21 16:02:14.906][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2026-03-21 16:02:14.908][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2026-03-21 16:02:14.909][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2026-03-21 16:02:14.910][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2026-03-21 16:02:14.912][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2026-03-21 16:02:14.913][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2026-03-21 16:02:14.914][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2026-03-21 16:02:14.915][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2026-03-21 16:02:14.917][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2026-03-21 16:02:14.918][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2026-03-21 16:02:14.919][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2026-03-21 16:02:14.920][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2026-03-21 16:02:14.922][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2026-03-21 16:02:14.923][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2026-03-21 16:02:14.923][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2026-03-21 16:02:14.923][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2026-03-21 16:02:14.923][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2026-03-21 16:02:14.923][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2026-03-21 16:02:14.923][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2026-03-21 16:02:14.923][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2026-03-21 16:02:14.923][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2026-03-21 16:02:14.923][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2026-03-21 16:02:14.923][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2026-03-21 16:02:14.923][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2026-03-21 16:02:14.925][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2026-03-21 16:02:14.926][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2026-03-21 16:02:14.926][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2026-03-21 16:02:14.926][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2026-03-21 16:02:14.927][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2026-03-21 16:02:14.928][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2026-03-21 16:02:14.929][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2026-03-21 16:02:14.931][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2026-03-21 16:02:14.932][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2026-03-21 16:02:14.933][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2026-03-21 16:02:14.934][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2026-03-21 16:02:14.935][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2026-03-21 16:02:14.935][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2026-03-21 16:02:14.937][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2026-03-21 16:02:14.938][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2026-03-21 16:02:14.939][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2026-03-21 16:02:14.940][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2026-03-21 16:02:14.940][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2026-03-21 16:02:14.948][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2026-03-21 16:02:14.950][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2026-03-21 16:02:14.952][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2026-03-21 16:02:14.957][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2026-03-21 16:02:14.959][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2026-03-21 16:02:14.961][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2026-03-21 16:02:14.982][super$initialize] Initialize connector chebi.
biodb.DEBUG[2026-03-21 16:02:15.000][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2026-03-21 16:02:15.010][biodb::testThat]
biodb.INFO [2026-03-21 16:02:15.011][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2026-03-21 16:02:15.013][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2026-03-21 16:02:15.014][biodb::testThat]
biodb.TRACE[2026-03-21 16:02:15.018][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-15440-content.xml".
biodb.DEBUG[2026-03-21 16:02:15.020][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2026-03-21 16:02:15.024][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2026-03-21 16:02:15.032][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2026-03-21 16:02:15.034][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2026-03-21 16:02:15.035][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-03-21 16:02:15.052][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2026-03-21 16:02:15.053][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-03-21 16:02:15.054][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2026-03-21 16:02:15.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2026-03-21 16:02:15.065][ef$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:15.066][ef$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:15.067][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.069][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:15.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:15.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.092][ef$get] Asked field names are: charge.
biodb.TRACE[2026-03-21 16:02:15.093][ef$get] Realnames of fields are: charge.
biodb.TRACE[2026-03-21 16:02:15.094][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.095][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.132][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2026-03-21 16:02:15.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2026-03-21 16:02:15.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.137][ef$get] Asked field names are: formula.
biodb.TRACE[2026-03-21 16:02:15.139][ef$get] Realnames of fields are: formula.
biodb.TRACE[2026-03-21 16:02:15.140][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.141][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.143][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2026-03-21 16:02:15.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2026-03-21 16:02:15.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.148][ef$get] Asked field names are: inchi.
biodb.TRACE[2026-03-21 16:02:15.150][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2026-03-21 16:02:15.151][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.152][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.154][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-03-21 16:02:15.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-03-21 16:02:15.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.159][ef$get] Asked field names are: inchikey.
biodb.TRACE[2026-03-21 16:02:15.161][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-03-21 16:02:15.162][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.163][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.165][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-03-21 16:02:15.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-03-21 16:02:15.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.170][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-03-21 16:02:15.172][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-03-21 16:02:15.173][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.174][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.176][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-03-21 16:02:15.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-03-21 16:02:15.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.181][ef$get] Asked field names are: mass.
biodb.TRACE[2026-03-21 16:02:15.182][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-03-21 16:02:15.183][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.185][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.186][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2026-03-21 16:02:15.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-03-21 16:02:15.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.192][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-03-21 16:02:15.193][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-03-21 16:02:15.194][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.195][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.197][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-03-21 16:02:15.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-03-21 16:02:15.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.212][ef$get] Asked field names are: name.
biodb.TRACE[2026-03-21 16:02:15.214][ef$get] Realnames of fields are: name.
biodb.TRACE[2026-03-21 16:02:15.215][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.216][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.218][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2026-03-21 16:02:15.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2026-03-21 16:02:15.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.223][ef$get] Asked field names are: n_stars.
biodb.TRACE[2026-03-21 16:02:15.225][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-03-21 16:02:15.226][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.228][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.229][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2026-03-21 16:02:15.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-03-21 16:02:15.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.235][ef$get] Asked field names are: smiles.
biodb.TRACE[2026-03-21 16:02:15.236][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2026-03-21 16:02:15.238][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.239][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.241][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2026-03-21 16:02:15.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2026-03-21 16:02:15.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.246][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-03-21 16:02:15.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-03-21 16:02:15.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.251][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-03-21 16:02:15.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-03-21 16:02:15.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.256][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:15.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:15.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.261][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-03-21 16:02:15.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-03-21 16:02:15.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.267][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:15.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:15.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:15.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:15.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:15.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:15.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:15.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:15.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:15.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:15.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:15.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:15.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2026-03-21 16:02:15.343][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 15440.
biodb.TRACE[2026-03-21 16:02:15.346][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-03-21 16:02:15.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-03-21 16:02:15.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.351][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-03-21 16:02:15.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-03-21 16:02:15.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.423][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-03-21 16:02:15.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-03-21 16:02:15.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.429][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-03-21 16:02:15.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-03-21 16:02:15.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.434][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-03-21 16:02:15.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-03-21 16:02:15.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.439][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-03-21 16:02:15.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-03-21 16:02:15.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.444][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2026-03-21 16:02:15.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2026-03-21 16:02:15.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.449][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2026-03-21 16:02:15.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2026-03-21 16:02:15.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.454][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2026-03-21 16:02:15.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2026-03-21 16:02:15.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.459][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2026-03-21 16:02:15.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2026-03-21 16:02:15.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:15.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:15.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.488][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-03-21 16:02:15.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-03-21 16:02:15.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.499][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:15.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:15.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:15.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:15.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.509][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:15.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:15.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:15.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:15.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.522][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:15.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:15.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.527][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:15.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:15.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.532][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-03-21 16:02:15.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-03-21 16:02:15.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.537][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-03-21 16:02:15.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-03-21 16:02:15.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.542][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-03-21 16:02:15.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-03-21 16:02:15.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.556][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:15.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:15.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:15.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:15.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:15.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:15.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.572][ef$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:15.573][ef$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:15.575][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.576][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:15.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:15.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.594][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-03-21 16:02:15.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-03-21 16:02:15.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.600][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-03-21 16:02:15.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-03-21 16:02:15.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.605][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-03-21 16:02:15.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-03-21 16:02:15.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.610][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2026-03-21 16:02:15.611][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-03-21 16:02:15.612][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.613][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.615][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-03-21 16:02:15.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-03-21 16:02:15.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.634][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2026-03-21 16:02:15.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2026-03-21 16:02:15.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.639][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2026-03-21 16:02:15.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2026-03-21 16:02:15.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.644][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2026-03-21 16:02:15.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2026-03-21 16:02:15.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.650][ef$get] Asked field names are: name.
biodb.TRACE[2026-03-21 16:02:15.651][ef$get] Realnames of fields are: name.
biodb.TRACE[2026-03-21 16:02:15.652][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.653][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.655][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2026-03-21 16:02:15.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2026-03-21 16:02:15.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.670][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2026-03-21 16:02:15.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2026-03-21 16:02:15.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.676][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2026-03-21 16:02:15.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2026-03-21 16:02:15.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.681][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2026-03-21 16:02:15.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2026-03-21 16:02:15.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.686][ef$get] Asked field names are: formula.
biodb.TRACE[2026-03-21 16:02:15.687][ef$get] Realnames of fields are: formula.
biodb.TRACE[2026-03-21 16:02:15.689][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.690][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.691][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2026-03-21 16:02:15.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2026-03-21 16:02:15.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.707][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-03-21 16:02:15.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-03-21 16:02:15.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.712][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-03-21 16:02:15.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-03-21 16:02:15.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.717][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-03-21 16:02:15.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-03-21 16:02:15.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.723][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-03-21 16:02:15.724][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-03-21 16:02:15.725][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.726][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.727][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-03-21 16:02:15.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-03-21 16:02:15.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.743][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-03-21 16:02:15.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-03-21 16:02:15.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.748][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-03-21 16:02:15.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-03-21 16:02:15.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.753][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-03-21 16:02:15.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-03-21 16:02:15.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.758][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-03-21 16:02:15.759][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-03-21 16:02:15.760][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.762][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.763][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-03-21 16:02:15.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-03-21 16:02:15.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.778][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2026-03-21 16:02:15.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2026-03-21 16:02:15.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.784][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2026-03-21 16:02:15.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2026-03-21 16:02:15.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.789][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2026-03-21 16:02:15.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2026-03-21 16:02:15.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.794][ef$get] Asked field names are: charge.
biodb.TRACE[2026-03-21 16:02:15.795][ef$get] Realnames of fields are: charge.
biodb.TRACE[2026-03-21 16:02:15.796][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.798][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.799][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2026-03-21 16:02:15.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2026-03-21 16:02:15.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.815][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2026-03-21 16:02:15.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-03-21 16:02:15.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.825][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2026-03-21 16:02:15.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-03-21 16:02:15.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.830][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2026-03-21 16:02:15.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-03-21 16:02:15.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.835][ef$get] Asked field names are: n.stars.
biodb.TRACE[2026-03-21 16:02:15.837][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-03-21 16:02:15.838][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.839][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.840][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2026-03-21 16:02:15.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-03-21 16:02:15.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.856][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-03-21 16:02:15.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-03-21 16:02:15.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.862][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-03-21 16:02:15.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-03-21 16:02:15.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.867][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-03-21 16:02:15.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-03-21 16:02:15.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.872][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-03-21 16:02:15.873][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-03-21 16:02:15.875][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.876][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.877][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-03-21 16:02:15.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-03-21 16:02:15.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.893][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2026-03-21 16:02:15.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2026-03-21 16:02:15.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.899][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2026-03-21 16:02:15.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2026-03-21 16:02:15.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.904][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2026-03-21 16:02:15.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2026-03-21 16:02:15.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.909][ef$get] Asked field names are: smiles.
biodb.TRACE[2026-03-21 16:02:15.911][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2026-03-21 16:02:15.912][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.913][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.914][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2026-03-21 16:02:15.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2026-03-21 16:02:15.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.930][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-03-21 16:02:15.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-03-21 16:02:15.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.935][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-03-21 16:02:15.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-03-21 16:02:15.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.940][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-03-21 16:02:15.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-03-21 16:02:15.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.945][ef$get] Asked field names are: inchikey.
biodb.TRACE[2026-03-21 16:02:15.947][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-03-21 16:02:15.948][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.949][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.950][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-03-21 16:02:15.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-03-21 16:02:15.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.966][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-03-21 16:02:15.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-03-21 16:02:15.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.972][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-03-21 16:02:15.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-03-21 16:02:15.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.977][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-03-21 16:02:15.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-03-21 16:02:15.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.982][ef$get] Asked field names are: inchi.
biodb.TRACE[2026-03-21 16:02:15.983][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2026-03-21 16:02:15.984][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.986][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:15.987][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-03-21 16:02:15.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-03-21 16:02:15.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:15.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.003][ef$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:16.004][ef$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:16.005][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.006][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.013][ef$get] Asked field names are: charge.
biodb.TRACE[2026-03-21 16:02:16.014][ef$get] Realnames of fields are: charge.
biodb.TRACE[2026-03-21 16:02:16.016][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.017][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.027][ef$get] Asked field names are: formula.
biodb.TRACE[2026-03-21 16:02:16.029][ef$get] Realnames of fields are: formula.
biodb.TRACE[2026-03-21 16:02:16.030][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.031][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.037][ef$get] Asked field names are: inchi.
biodb.TRACE[2026-03-21 16:02:16.039][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2026-03-21 16:02:16.040][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.041][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.048][ef$get] Asked field names are: inchikey.
biodb.TRACE[2026-03-21 16:02:16.049][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-03-21 16:02:16.050][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.052][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.058][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-03-21 16:02:16.059][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-03-21 16:02:16.061][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.062][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.068][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-03-21 16:02:16.070][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-03-21 16:02:16.071][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.072][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.079][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-03-21 16:02:16.080][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-03-21 16:02:16.081][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.083][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.089][ef$get] Asked field names are: n.stars.
biodb.TRACE[2026-03-21 16:02:16.091][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-03-21 16:02:16.092][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.093][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.100][ef$get] Asked field names are: name.
biodb.TRACE[2026-03-21 16:02:16.101][ef$get] Realnames of fields are: name.
biodb.TRACE[2026-03-21 16:02:16.103][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.104][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.110][ef$get] Asked field names are: smiles.
biodb.TRACE[2026-03-21 16:02:16.112][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2026-03-21 16:02:16.113][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.114][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.137][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-2528-content.xml".
biodb.DEBUG[2026-03-21 16:02:16.186][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2026-03-21 16:02:16.188][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2026-03-21 16:02:16.190][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2026-03-21 16:02:16.191][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2026-03-21 16:02:16.192][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-03-21 16:02:16.199][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2026-03-21 16:02:16.200][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-03-21 16:02:16.201][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2026-03-21 16:02:16.202][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2026-03-21 16:02:16.205][ef$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:16.206][ef$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:16.208][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.209][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:16.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:16.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.242][ef$get] Asked field names are: charge.
biodb.TRACE[2026-03-21 16:02:16.244][ef$get] Realnames of fields are: charge.
biodb.TRACE[2026-03-21 16:02:16.245][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.246][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.248][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2026-03-21 16:02:16.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2026-03-21 16:02:16.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.253][ef$get] Asked field names are: formula.
biodb.TRACE[2026-03-21 16:02:16.254][ef$get] Realnames of fields are: formula.
biodb.TRACE[2026-03-21 16:02:16.255][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.256][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.258][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2026-03-21 16:02:16.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2026-03-21 16:02:16.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.264][ef$get] Asked field names are: inchi.
biodb.TRACE[2026-03-21 16:02:16.265][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2026-03-21 16:02:16.266][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.267][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.269][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-03-21 16:02:16.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-03-21 16:02:16.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.274][ef$get] Asked field names are: inchikey.
biodb.TRACE[2026-03-21 16:02:16.276][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-03-21 16:02:16.277][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.278][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.280][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-03-21 16:02:16.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-03-21 16:02:16.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.285][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-03-21 16:02:16.286][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-03-21 16:02:16.287][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.289][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.290][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-03-21 16:02:16.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-03-21 16:02:16.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.295][ef$get] Asked field names are: mass.
biodb.TRACE[2026-03-21 16:02:16.297][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-03-21 16:02:16.298][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.299][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.301][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2026-03-21 16:02:16.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-03-21 16:02:16.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.306][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-03-21 16:02:16.307][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-03-21 16:02:16.309][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.310][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.311][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-03-21 16:02:16.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-03-21 16:02:16.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.316][ef$get] Asked field names are: name.
biodb.TRACE[2026-03-21 16:02:16.318][ef$get] Realnames of fields are: name.
biodb.TRACE[2026-03-21 16:02:16.319][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.320][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.322][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2026-03-21 16:02:16.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2026-03-21 16:02:16.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.327][ef$get] Asked field names are: n_stars.
biodb.TRACE[2026-03-21 16:02:16.329][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-03-21 16:02:16.330][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.331][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.333][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2026-03-21 16:02:16.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-03-21 16:02:16.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.338][ef$get] Asked field names are: smiles.
biodb.TRACE[2026-03-21 16:02:16.339][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2026-03-21 16:02:16.340][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.342][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.343][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2026-03-21 16:02:16.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2026-03-21 16:02:16.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.349][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-03-21 16:02:16.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-03-21 16:02:16.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.354][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-03-21 16:02:16.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-03-21 16:02:16.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:16.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:16.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.364][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-03-21 16:02:16.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-03-21 16:02:16.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:16.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:16.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.374][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:16.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:16.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:16.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:16.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.385][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:16.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:16.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:16.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:16.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:16.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:16.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2026-03-21 16:02:16.400][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2528.
biodb.TRACE[2026-03-21 16:02:16.433][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-03-21 16:02:16.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-03-21 16:02:16.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.438][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-03-21 16:02:16.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-03-21 16:02:16.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.443][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-03-21 16:02:16.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-03-21 16:02:16.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.449][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-03-21 16:02:16.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-03-21 16:02:16.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.454][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-03-21 16:02:16.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-03-21 16:02:16.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.459][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-03-21 16:02:16.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-03-21 16:02:16.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.464][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2026-03-21 16:02:16.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2026-03-21 16:02:16.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.469][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2026-03-21 16:02:16.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2026-03-21 16:02:16.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.474][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2026-03-21 16:02:16.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2026-03-21 16:02:16.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.479][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2026-03-21 16:02:16.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2026-03-21 16:02:16.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.485][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:16.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:16.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.496][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-03-21 16:02:16.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-03-21 16:02:16.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.506][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:16.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:16.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:16.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:16.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:16.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:16.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:16.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:16.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:16.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:16.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.534][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:16.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:16.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.539][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-03-21 16:02:16.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-03-21 16:02:16.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.544][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-03-21 16:02:16.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-03-21 16:02:16.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.550][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-03-21 16:02:16.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-03-21 16:02:16.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:16.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:16.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.582][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:16.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:16.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.588][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:16.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:16.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.593][ef$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:16.594][ef$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:16.596][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.601][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.602][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:16.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:16.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.619][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-03-21 16:02:16.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-03-21 16:02:16.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.624][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-03-21 16:02:16.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-03-21 16:02:16.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.629][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-03-21 16:02:16.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-03-21 16:02:16.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.635][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2026-03-21 16:02:16.636][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-03-21 16:02:16.637][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.638][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.640][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-03-21 16:02:16.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-03-21 16:02:16.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.656][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2026-03-21 16:02:16.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2026-03-21 16:02:16.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.661][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2026-03-21 16:02:16.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2026-03-21 16:02:16.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.667][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2026-03-21 16:02:16.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2026-03-21 16:02:16.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.672][ef$get] Asked field names are: name.
biodb.TRACE[2026-03-21 16:02:16.673][ef$get] Realnames of fields are: name.
biodb.TRACE[2026-03-21 16:02:16.675][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.676][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.677][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2026-03-21 16:02:16.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2026-03-21 16:02:16.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.694][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2026-03-21 16:02:16.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2026-03-21 16:02:16.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.699][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2026-03-21 16:02:16.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2026-03-21 16:02:16.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.704][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2026-03-21 16:02:16.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2026-03-21 16:02:16.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.710][ef$get] Asked field names are: formula.
biodb.TRACE[2026-03-21 16:02:16.711][ef$get] Realnames of fields are: formula.
biodb.TRACE[2026-03-21 16:02:16.712][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.714][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.715][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2026-03-21 16:02:16.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2026-03-21 16:02:16.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.731][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2026-03-21 16:02:16.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-03-21 16:02:16.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.737][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-03-21 16:02:16.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-03-21 16:02:16.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.742][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-03-21 16:02:16.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-03-21 16:02:16.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.747][ef$get] Asked field names are: mass.
biodb.TRACE[2026-03-21 16:02:16.749][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-03-21 16:02:16.750][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.751][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.753][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2026-03-21 16:02:16.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-03-21 16:02:16.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.769][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-03-21 16:02:16.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-03-21 16:02:16.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.775][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-03-21 16:02:16.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-03-21 16:02:16.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.781][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-03-21 16:02:16.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-03-21 16:02:16.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.787][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-03-21 16:02:16.788][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-03-21 16:02:16.790][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.791][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.792][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-03-21 16:02:16.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-03-21 16:02:16.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.814][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-03-21 16:02:16.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-03-21 16:02:16.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.819][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-03-21 16:02:16.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-03-21 16:02:16.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.825][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-03-21 16:02:16.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-03-21 16:02:16.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.830][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-03-21 16:02:16.831][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-03-21 16:02:16.833][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.834][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.835][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-03-21 16:02:16.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-03-21 16:02:16.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.852][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2026-03-21 16:02:16.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2026-03-21 16:02:16.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.857][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2026-03-21 16:02:16.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2026-03-21 16:02:16.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.863][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2026-03-21 16:02:16.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2026-03-21 16:02:16.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.869][ef$get] Asked field names are: charge.
biodb.TRACE[2026-03-21 16:02:16.870][ef$get] Realnames of fields are: charge.
biodb.TRACE[2026-03-21 16:02:16.872][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.873][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.875][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2026-03-21 16:02:16.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2026-03-21 16:02:16.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.892][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2026-03-21 16:02:16.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-03-21 16:02:16.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.897][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2026-03-21 16:02:16.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-03-21 16:02:16.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.902][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2026-03-21 16:02:16.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-03-21 16:02:16.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.907][ef$get] Asked field names are: n.stars.
biodb.TRACE[2026-03-21 16:02:16.909][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-03-21 16:02:16.910][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.911][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.912][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2026-03-21 16:02:16.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-03-21 16:02:16.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.929][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-03-21 16:02:16.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-03-21 16:02:16.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.934][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-03-21 16:02:16.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-03-21 16:02:16.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.940][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-03-21 16:02:16.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-03-21 16:02:16.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.945][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-03-21 16:02:16.946][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-03-21 16:02:16.947][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.949][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.950][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-03-21 16:02:16.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-03-21 16:02:16.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.966][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2026-03-21 16:02:16.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2026-03-21 16:02:16.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.972][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2026-03-21 16:02:16.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2026-03-21 16:02:16.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.977][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2026-03-21 16:02:16.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2026-03-21 16:02:16.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.982][ef$get] Asked field names are: smiles.
biodb.TRACE[2026-03-21 16:02:16.984][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2026-03-21 16:02:16.985][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.986][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:16.988][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2026-03-21 16:02:16.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2026-03-21 16:02:16.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:16.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.004][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-03-21 16:02:17.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-03-21 16:02:17.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.009][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-03-21 16:02:17.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-03-21 16:02:17.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.021][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-03-21 16:02:17.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-03-21 16:02:17.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.026][ef$get] Asked field names are: inchikey.
biodb.TRACE[2026-03-21 16:02:17.028][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-03-21 16:02:17.029][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.030][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.032][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-03-21 16:02:17.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-03-21 16:02:17.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.048][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-03-21 16:02:17.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-03-21 16:02:17.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.054][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-03-21 16:02:17.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-03-21 16:02:17.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.060][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-03-21 16:02:17.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-03-21 16:02:17.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.065][ef$get] Asked field names are: inchi.
biodb.TRACE[2026-03-21 16:02:17.067][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2026-03-21 16:02:17.068][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.069][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.071][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-03-21 16:02:17.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-03-21 16:02:17.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.088][ef$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:17.090][ef$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:17.091][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.092][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.099][ef$get] Asked field names are: charge.
biodb.TRACE[2026-03-21 16:02:17.100][ef$get] Realnames of fields are: charge.
biodb.TRACE[2026-03-21 16:02:17.102][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.103][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.110][ef$get] Asked field names are: formula.
biodb.TRACE[2026-03-21 16:02:17.111][ef$get] Realnames of fields are: formula.
biodb.TRACE[2026-03-21 16:02:17.113][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.114][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.120][ef$get] Asked field names are: inchi.
biodb.TRACE[2026-03-21 16:02:17.122][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2026-03-21 16:02:17.123][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.124][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.130][ef$get] Asked field names are: inchikey.
biodb.TRACE[2026-03-21 16:02:17.132][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-03-21 16:02:17.133][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.134][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.140][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-03-21 16:02:17.142][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-03-21 16:02:17.143][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.144][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.150][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-03-21 16:02:17.152][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-03-21 16:02:17.153][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.154][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.161][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-03-21 16:02:17.162][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-03-21 16:02:17.164][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.165][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.171][ef$get] Asked field names are: n.stars.
biodb.TRACE[2026-03-21 16:02:17.173][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-03-21 16:02:17.174][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.175][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.181][ef$get] Asked field names are: name.
biodb.TRACE[2026-03-21 16:02:17.183][ef$get] Realnames of fields are: name.
biodb.TRACE[2026-03-21 16:02:17.184][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.185][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.192][ef$get] Asked field names are: smiles.
biodb.TRACE[2026-03-21 16:02:17.193][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2026-03-21 16:02:17.194][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.196][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.202][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-7799-content.xml".
biodb.DEBUG[2026-03-21 16:02:17.204][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2026-03-21 16:02:17.205][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2026-03-21 16:02:17.207][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2026-03-21 16:02:17.209][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2026-03-21 16:02:17.210][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-03-21 16:02:17.216][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2026-03-21 16:02:17.217][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-03-21 16:02:17.219][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2026-03-21 16:02:17.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2026-03-21 16:02:17.222][ef$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:17.224][ef$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:17.225][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.231][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:17.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:17.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.238][ef$get] Asked field names are: charge.
biodb.TRACE[2026-03-21 16:02:17.239][ef$get] Realnames of fields are: charge.
biodb.TRACE[2026-03-21 16:02:17.241][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.242][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.243][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2026-03-21 16:02:17.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2026-03-21 16:02:17.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.249][ef$get] Asked field names are: formula.
biodb.TRACE[2026-03-21 16:02:17.250][ef$get] Realnames of fields are: formula.
biodb.TRACE[2026-03-21 16:02:17.252][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.253][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.254][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2026-03-21 16:02:17.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2026-03-21 16:02:17.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.260][ef$get] Asked field names are: inchi.
biodb.TRACE[2026-03-21 16:02:17.261][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2026-03-21 16:02:17.263][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.264][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.265][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-03-21 16:02:17.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-03-21 16:02:17.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.271][ef$get] Asked field names are: inchikey.
biodb.TRACE[2026-03-21 16:02:17.272][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-03-21 16:02:17.273][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.274][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.276][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-03-21 16:02:17.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-03-21 16:02:17.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.281][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-03-21 16:02:17.282][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-03-21 16:02:17.284][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.285][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.286][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-03-21 16:02:17.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-03-21 16:02:17.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.292][ef$get] Asked field names are: mass.
biodb.TRACE[2026-03-21 16:02:17.293][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-03-21 16:02:17.294][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.295][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.297][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2026-03-21 16:02:17.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-03-21 16:02:17.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.303][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-03-21 16:02:17.304][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-03-21 16:02:17.305][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.307][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.308][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-03-21 16:02:17.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-03-21 16:02:17.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.314][ef$get] Asked field names are: name.
biodb.TRACE[2026-03-21 16:02:17.315][ef$get] Realnames of fields are: name.
biodb.TRACE[2026-03-21 16:02:17.317][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.318][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.320][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2026-03-21 16:02:17.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2026-03-21 16:02:17.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.325][ef$get] Asked field names are: n_stars.
biodb.TRACE[2026-03-21 16:02:17.326][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-03-21 16:02:17.328][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.329][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.330][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2026-03-21 16:02:17.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-03-21 16:02:17.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.336][ef$get] Asked field names are: smiles.
biodb.TRACE[2026-03-21 16:02:17.337][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2026-03-21 16:02:17.338][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.339][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.341][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2026-03-21 16:02:17.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2026-03-21 16:02:17.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.346][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-03-21 16:02:17.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-03-21 16:02:17.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.351][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-03-21 16:02:17.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-03-21 16:02:17.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.356][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:17.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:17.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.361][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-03-21 16:02:17.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-03-21 16:02:17.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.366][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:17.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:17.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.372][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:17.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:17.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:17.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:17.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:17.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:17.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.387][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:17.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:17.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:17.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:17.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2026-03-21 16:02:17.397][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 7799.
biodb.TRACE[2026-03-21 16:02:17.400][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-03-21 16:02:17.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-03-21 16:02:17.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.405][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-03-21 16:02:17.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-03-21 16:02:17.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.410][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-03-21 16:02:17.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-03-21 16:02:17.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.416][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-03-21 16:02:17.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-03-21 16:02:17.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.421][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-03-21 16:02:17.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-03-21 16:02:17.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.430][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-03-21 16:02:17.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-03-21 16:02:17.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.436][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2026-03-21 16:02:17.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2026-03-21 16:02:17.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.441][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2026-03-21 16:02:17.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2026-03-21 16:02:17.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.446][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2026-03-21 16:02:17.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2026-03-21 16:02:17.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.451][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2026-03-21 16:02:17.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2026-03-21 16:02:17.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:17.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:17.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.468][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-03-21 16:02:17.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-03-21 16:02:17.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.479][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:17.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:17.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:17.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:17.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.489][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:17.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:17.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:17.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:17.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:17.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:17.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:17.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:17.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.512][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-03-21 16:02:17.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-03-21 16:02:17.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.517][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-03-21 16:02:17.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-03-21 16:02:17.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.522][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-03-21 16:02:17.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-03-21 16:02:17.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:17.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:17.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:17.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:17.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:17.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:17.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.550][ef$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:17.551][ef$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:17.553][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.554][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:17.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:17.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.570][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2026-03-21 16:02:17.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2026-03-21 16:02:17.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.576][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2026-03-21 16:02:17.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2026-03-21 16:02:17.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.581][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2026-03-21 16:02:17.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2026-03-21 16:02:17.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.586][ef$get] Asked field names are: smiles.
biodb.TRACE[2026-03-21 16:02:17.587][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2026-03-21 16:02:17.588][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.590][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.591][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2026-03-21 16:02:17.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2026-03-21 16:02:17.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.606][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-03-21 16:02:17.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-03-21 16:02:17.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.611][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-03-21 16:02:17.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-03-21 16:02:17.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.616][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-03-21 16:02:17.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-03-21 16:02:17.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.622][ef$get] Asked field names are: inchi.
biodb.TRACE[2026-03-21 16:02:17.627][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2026-03-21 16:02:17.628][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.629][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.631][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2026-03-21 16:02:17.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2026-03-21 16:02:17.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.646][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-03-21 16:02:17.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-03-21 16:02:17.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.651][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-03-21 16:02:17.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-03-21 16:02:17.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.656][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-03-21 16:02:17.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-03-21 16:02:17.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.661][ef$get] Asked field names are: inchikey.
biodb.TRACE[2026-03-21 16:02:17.663][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-03-21 16:02:17.664][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.665][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.666][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2026-03-21 16:02:17.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-03-21 16:02:17.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.682][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-03-21 16:02:17.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-03-21 16:02:17.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.687][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-03-21 16:02:17.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-03-21 16:02:17.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.692][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-03-21 16:02:17.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-03-21 16:02:17.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.697][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-03-21 16:02:17.698][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-03-21 16:02:17.700][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.701][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.702][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-03-21 16:02:17.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-03-21 16:02:17.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.718][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-03-21 16:02:17.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-03-21 16:02:17.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.723][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-03-21 16:02:17.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-03-21 16:02:17.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.728][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-03-21 16:02:17.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-03-21 16:02:17.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.733][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-03-21 16:02:17.734][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-03-21 16:02:17.735][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.736][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.738][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-03-21 16:02:17.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-03-21 16:02:17.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.753][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-03-21 16:02:17.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-03-21 16:02:17.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.758][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-03-21 16:02:17.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-03-21 16:02:17.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.763][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-03-21 16:02:17.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-03-21 16:02:17.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.768][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-03-21 16:02:17.770][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-03-21 16:02:17.771][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.772][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.773][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-03-21 16:02:17.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-03-21 16:02:17.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.789][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2026-03-21 16:02:17.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2026-03-21 16:02:17.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.794][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2026-03-21 16:02:17.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2026-03-21 16:02:17.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.799][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2026-03-21 16:02:17.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2026-03-21 16:02:17.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.804][ef$get] Asked field names are: charge.
biodb.TRACE[2026-03-21 16:02:17.806][ef$get] Realnames of fields are: charge.
biodb.TRACE[2026-03-21 16:02:17.807][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.808][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.809][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2026-03-21 16:02:17.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2026-03-21 16:02:17.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.829][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2026-03-21 16:02:17.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-03-21 16:02:17.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.834][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2026-03-21 16:02:17.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-03-21 16:02:17.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.839][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2026-03-21 16:02:17.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-03-21 16:02:17.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.844][ef$get] Asked field names are: n.stars.
biodb.TRACE[2026-03-21 16:02:17.845][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-03-21 16:02:17.846][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.848][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.849][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2026-03-21 16:02:17.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-03-21 16:02:17.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.864][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2026-03-21 16:02:17.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2026-03-21 16:02:17.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.869][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2026-03-21 16:02:17.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2026-03-21 16:02:17.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.874][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2026-03-21 16:02:17.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2026-03-21 16:02:17.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.880][ef$get] Asked field names are: name.
biodb.TRACE[2026-03-21 16:02:17.881][ef$get] Realnames of fields are: name.
biodb.TRACE[2026-03-21 16:02:17.882][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.883][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.884][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2026-03-21 16:02:17.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2026-03-21 16:02:17.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.900][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2026-03-21 16:02:17.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2026-03-21 16:02:17.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.905][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2026-03-21 16:02:17.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2026-03-21 16:02:17.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.910][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2026-03-21 16:02:17.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2026-03-21 16:02:17.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.915][ef$get] Asked field names are: formula.
biodb.TRACE[2026-03-21 16:02:17.916][ef$get] Realnames of fields are: formula.
biodb.TRACE[2026-03-21 16:02:17.917][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.919][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.920][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2026-03-21 16:02:17.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2026-03-21 16:02:17.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.935][ef$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:17.937][ef$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:17.938][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.939][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.945][ef$get] Asked field names are: charge.
biodb.TRACE[2026-03-21 16:02:17.947][ef$get] Realnames of fields are: charge.
biodb.TRACE[2026-03-21 16:02:17.948][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.949][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.955][ef$get] Asked field names are: formula.
biodb.TRACE[2026-03-21 16:02:17.957][ef$get] Realnames of fields are: formula.
biodb.TRACE[2026-03-21 16:02:17.958][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.959][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.965][ef$get] Asked field names are: inchi.
biodb.TRACE[2026-03-21 16:02:17.967][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2026-03-21 16:02:17.968][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.969][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.975][ef$get] Asked field names are: inchikey.
biodb.TRACE[2026-03-21 16:02:17.977][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2026-03-21 16:02:17.978][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.979][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.985][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2026-03-21 16:02:17.987][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2026-03-21 16:02:17.988][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.989][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:17.995][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2026-03-21 16:02:17.997][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2026-03-21 16:02:17.998][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:17.999][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:18.005][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-03-21 16:02:18.007][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-03-21 16:02:18.008][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:18.009][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:18.021][ef$get] Asked field names are: n.stars.
biodb.TRACE[2026-03-21 16:02:18.022][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2026-03-21 16:02:18.024][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:18.025][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:18.031][ef$get] Asked field names are: name.
biodb.TRACE[2026-03-21 16:02:18.033][ef$get] Realnames of fields are: name.
biodb.TRACE[2026-03-21 16:02:18.034][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:18.035][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:18.041][ef$get] Asked field names are: smiles.
biodb.TRACE[2026-03-21 16:02:18.043][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2026-03-21 16:02:18.044][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:18.045][ef$get] fields variable is a list.
biodb.INFO [2026-03-21 16:02:18.055][biodb::testThat]
biodb.INFO [2026-03-21 16:02:18.057][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2026-03-21 16:02:18.058][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2026-03-21 16:02:18.059][biodb::testThat]
biodb.DEBUG[2026-03-21 16:02:18.062][private$loadEntries] Creating entries from ids [3]: "15440, 2528, 7799".
biodb.DEBUG[2026-03-21 16:02:18.120][conn$getEntryContent] Get ChEBI entry content(s) for 3 id(s)...
fscache.INFO [2026-03-21 16:02:18.124][cch$loadContents] Load 3 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2026-03-21 16:02:18.125][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2026-03-21 16:02:18.126][conn$getEntryContent] 3 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2026-03-21 16:02:18.128][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2026-03-21 16:02:18.129][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2026-03-21 16:02:18.136][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2026-03-21 16:02:18.137][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2026-03-21 16:02:18.138][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-03-21 16:02:18.145][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2026-03-21 16:02:18.146][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-03-21 16:02:18.147][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2026-03-21 16:02:18.148][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2026-03-21 16:02:18.150][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
fscache.INFO [2026-03-21 16:02:18.177][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
sched.DEBUG[2026-03-21 16:02:18.178][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-03-21 16:02:18.180][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-03-21 16:02:18.181][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
sched.TRACE[2026-03-21 16:02:18.583][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440 does not exist.
sched.TRACE[2026-03-21 16:02:18.585][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-03-21 16:02:18.586][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-03-21 16:02:18.587][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440).
sched.INFO [2026-03-21 16:02:19.002][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440". Retrying connection to server...
sched.DEBUG[2026-03-21 16:02:19.003][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-03-21 16:02:19.004][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-03-21 16:02:19.006][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
sched.TRACE[2026-03-21 16:02:19.398][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440 does not exist.
sched.TRACE[2026-03-21 16:02:19.399][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-03-21 16:02:19.400][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-03-21 16:02:19.402][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440).
sched.INFO [2026-03-21 16:02:19.811][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440". Retrying connection to server...
sched.DEBUG[2026-03-21 16:02:19.813][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-03-21 16:02:19.814][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-03-21 16:02:19.816][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
sched.TRACE[2026-03-21 16:02:20.210][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440 does not exist.
sched.TRACE[2026-03-21 16:02:20.211][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-03-21 16:02:20.212][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-03-21 16:02:20.213][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440).
sched.INFO [2026-03-21 16:02:20.624][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440". Retrying connection to server...
sched.DEBUG[2026-03-21 16:02:20.625][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-03-21 16:02:20.627][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-03-21 16:02:20.628][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
sched.TRACE[2026-03-21 16:02:21.020][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440 does not exist.
sched.TRACE[2026-03-21 16:02:21.021][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-03-21 16:02:21.023][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-03-21 16:02:21.024][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440).
sched.INFO [2026-03-21 16:02:21.433][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440". Retrying connection to server...
sched.DEBUG[2026-03-21 16:02:21.434][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-03-21 16:02:21.435][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-03-21 16:02:21.437][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
sched.TRACE[2026-03-21 16:02:21.828][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440 does not exist.
sched.TRACE[2026-03-21 16:02:21.829][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-03-21 16:02:21.830][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-03-21 16:02:21.832][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440).
sched.INFO [2026-03-21 16:02:22.242][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440". Retrying connection to server...
sched.DEBUG[2026-03-21 16:02:22.244][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-03-21 16:02:22.245][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-03-21 16:02:22.247][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
sched.TRACE[2026-03-21 16:02:22.638][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440 does not exist.
sched.TRACE[2026-03-21 16:02:22.639][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-03-21 16:02:22.641][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-03-21 16:02:22.642][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440).
sched.INFO [2026-03-21 16:02:23.051][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440". Retrying connection to server...
sched.DEBUG[2026-03-21 16:02:23.052][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-03-21 16:02:23.053][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-03-21 16:02:23.055][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
sched.TRACE[2026-03-21 16:02:23.448][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440 does not exist.
sched.TRACE[2026-03-21 16:02:23.449][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-03-21 16:02:23.450][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-03-21 16:02:23.452][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440).
sched.INFO [2026-03-21 16:02:23.861][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440". Retrying connection to server...
sched.DEBUG[2026-03-21 16:02:23.863][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-03-21 16:02:23.870][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-03-21 16:02:23.883][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
sched.TRACE[2026-03-21 16:02:24.275][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440 does not exist.
sched.TRACE[2026-03-21 16:02:24.276][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-03-21 16:02:24.278][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-03-21 16:02:24.279][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440).
sched.INFO [2026-03-21 16:02:24.927][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440". Retrying connection to server...
sched.DEBUG[2026-03-21 16:02:24.929][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-03-21 16:02:24.930][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-03-21 16:02:24.933][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
sched.TRACE[2026-03-21 16:02:25.323][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440 does not exist.
sched.TRACE[2026-03-21 16:02:25.324][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-03-21 16:02:25.326][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-03-21 16:02:25.327][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440).
sched.INFO [2026-03-21 16:02:25.736][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440". Retrying connection to server...
sched.DEBUG[2026-03-21 16:02:25.737][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-03-21 16:02:25.739][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-03-21 16:02:25.740][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440".
sched.TRACE[2026-03-21 16:02:26.132][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440 does not exist.
sched.TRACE[2026-03-21 16:02:26.133][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-03-21 16:02:26.135][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-03-21 16:02:26.136][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440).
sched.INFO [2026-03-21 16:02:26.545][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15440". Retrying connection to server...
biodb.DEBUG[2026-03-21 16:02:26.547][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2026-03-21 16:02:26.548][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2026-03-21 16:02:26.549][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-03-21 16:02:26.556][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2026-03-21 16:02:26.557][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-03-21 16:02:26.558][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2026-03-21 16:02:26.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2026-03-21 16:02:26.582][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528".
fscache.INFO [2026-03-21 16:02:26.622][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
sched.DEBUG[2026-03-21 16:02:26.643][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-03-21 16:02:26.644][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-03-21 16:02:26.646][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528".
sched.TRACE[2026-03-21 16:02:27.040][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528 does not exist.
sched.TRACE[2026-03-21 16:02:27.041][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-03-21 16:02:27.043][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-03-21 16:02:27.044][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528).
sched.INFO [2026-03-21 16:02:27.557][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528". Retrying connection to server...
sched.DEBUG[2026-03-21 16:02:27.558][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-03-21 16:02:27.559][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-03-21 16:02:27.561][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528".
sched.TRACE[2026-03-21 16:02:27.952][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528 does not exist.
sched.TRACE[2026-03-21 16:02:27.953][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-03-21 16:02:27.954][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-03-21 16:02:27.956][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528).
sched.INFO [2026-03-21 16:02:28.365][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528". Retrying connection to server...
sched.DEBUG[2026-03-21 16:02:28.367][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-03-21 16:02:28.368][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-03-21 16:02:28.370][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528".
sched.TRACE[2026-03-21 16:02:28.760][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528 does not exist.
sched.TRACE[2026-03-21 16:02:28.762][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-03-21 16:02:28.764][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-03-21 16:02:28.765][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528).
sched.INFO [2026-03-21 16:02:29.412][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528". Retrying connection to server...
sched.DEBUG[2026-03-21 16:02:29.422][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-03-21 16:02:29.423][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-03-21 16:02:29.425][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528".
sched.TRACE[2026-03-21 16:02:29.817][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528 does not exist.
sched.TRACE[2026-03-21 16:02:29.819][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-03-21 16:02:29.821][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-03-21 16:02:29.823][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528).
sched.INFO [2026-03-21 16:02:30.235][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528". Retrying connection to server...
sched.DEBUG[2026-03-21 16:02:30.236][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-03-21 16:02:30.237][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-03-21 16:02:30.239][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528".
sched.TRACE[2026-03-21 16:02:30.644][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528 does not exist.
sched.TRACE[2026-03-21 16:02:30.647][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-03-21 16:02:30.649][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-03-21 16:02:30.651][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528).
sched.INFO [2026-03-21 16:02:31.063][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528". Retrying connection to server...
sched.DEBUG[2026-03-21 16:02:31.064][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-03-21 16:02:31.065][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-03-21 16:02:31.067][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528".
sched.TRACE[2026-03-21 16:02:31.459][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528 does not exist.
sched.TRACE[2026-03-21 16:02:31.460][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-03-21 16:02:31.461][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-03-21 16:02:31.462][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528).
sched.INFO [2026-03-21 16:02:31.873][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528". Retrying connection to server...
sched.DEBUG[2026-03-21 16:02:31.875][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-03-21 16:02:31.876][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-03-21 16:02:31.878][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528".
sched.TRACE[2026-03-21 16:02:32.269][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528 does not exist.
sched.TRACE[2026-03-21 16:02:32.270][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-03-21 16:02:32.271][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-03-21 16:02:32.273][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528).
sched.INFO [2026-03-21 16:02:32.683][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528". Retrying connection to server...
sched.DEBUG[2026-03-21 16:02:32.684][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-03-21 16:02:32.686][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-03-21 16:02:32.687][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528".
sched.TRACE[2026-03-21 16:02:33.078][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528 does not exist.
sched.TRACE[2026-03-21 16:02:33.079][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-03-21 16:02:33.080][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-03-21 16:02:33.082][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528).
sched.INFO [2026-03-21 16:02:33.490][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528". Retrying connection to server...
sched.DEBUG[2026-03-21 16:02:33.492][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-03-21 16:02:33.493][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-03-21 16:02:33.495][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528".
sched.TRACE[2026-03-21 16:02:33.888][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528 does not exist.
sched.TRACE[2026-03-21 16:02:33.889][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-03-21 16:02:33.890][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-03-21 16:02:33.891][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528).
sched.INFO [2026-03-21 16:02:34.301][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528". Retrying connection to server...
sched.DEBUG[2026-03-21 16:02:34.302][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-03-21 16:02:34.304][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-03-21 16:02:34.305][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528".
sched.TRACE[2026-03-21 16:02:34.696][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528 does not exist.
sched.TRACE[2026-03-21 16:02:34.697][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-03-21 16:02:34.699][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-03-21 16:02:34.700][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528).
sched.INFO [2026-03-21 16:02:35.109][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2528". Retrying connection to server...
biodb.DEBUG[2026-03-21 16:02:35.111][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2026-03-21 16:02:35.112][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2026-03-21 16:02:35.113][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-03-21 16:02:35.119][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2026-03-21 16:02:35.120][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-03-21 16:02:35.121][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2026-03-21 16:02:35.122][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2026-03-21 16:02:35.124][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
fscache.INFO [2026-03-21 16:02:35.126][private$cache$loadContents] Load 1 contents, from /Users/biocbuild/Library/Caches/org.R-project.R/R/sched.
sched.DEBUG[2026-03-21 16:02:35.128][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-03-21 16:02:35.129][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-03-21 16:02:35.130][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
sched.TRACE[2026-03-21 16:02:35.524][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799 does not exist.
sched.TRACE[2026-03-21 16:02:35.526][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-03-21 16:02:35.527][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-03-21 16:02:35.528][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799).
sched.INFO [2026-03-21 16:02:35.940][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799". Retrying connection to server...
sched.DEBUG[2026-03-21 16:02:35.941][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-03-21 16:02:35.943][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-03-21 16:02:35.944][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
sched.TRACE[2026-03-21 16:02:36.336][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799 does not exist.
sched.TRACE[2026-03-21 16:02:36.337][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-03-21 16:02:36.339][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-03-21 16:02:36.340][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799).
sched.INFO [2026-03-21 16:02:36.749][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799". Retrying connection to server...
sched.DEBUG[2026-03-21 16:02:36.750][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-03-21 16:02:36.752][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-03-21 16:02:36.753][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
sched.TRACE[2026-03-21 16:02:37.145][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799 does not exist.
sched.TRACE[2026-03-21 16:02:37.146][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-03-21 16:02:37.147][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-03-21 16:02:37.148][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799).
sched.INFO [2026-03-21 16:02:37.559][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799". Retrying connection to server...
sched.DEBUG[2026-03-21 16:02:37.560][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-03-21 16:02:37.561][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-03-21 16:02:37.563][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
sched.TRACE[2026-03-21 16:02:37.954][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799 does not exist.
sched.TRACE[2026-03-21 16:02:37.955][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-03-21 16:02:37.957][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-03-21 16:02:37.958][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799).
sched.INFO [2026-03-21 16:02:38.367][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799". Retrying connection to server...
sched.DEBUG[2026-03-21 16:02:38.369][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-03-21 16:02:38.370][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-03-21 16:02:38.372][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
sched.TRACE[2026-03-21 16:02:38.765][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799 does not exist.
sched.TRACE[2026-03-21 16:02:38.767][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-03-21 16:02:38.770][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-03-21 16:02:38.772][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799).
sched.INFO [2026-03-21 16:02:39.184][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799". Retrying connection to server...
sched.DEBUG[2026-03-21 16:02:39.185][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-03-21 16:02:39.187][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-03-21 16:02:39.190][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
sched.TRACE[2026-03-21 16:02:39.584][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799 does not exist.
sched.TRACE[2026-03-21 16:02:39.586][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-03-21 16:02:39.588][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-03-21 16:02:39.590][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799).
sched.INFO [2026-03-21 16:02:40.151][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799". Retrying connection to server...
sched.DEBUG[2026-03-21 16:02:40.153][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-03-21 16:02:40.154][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-03-21 16:02:40.156][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
sched.TRACE[2026-03-21 16:02:40.566][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799 does not exist.
sched.TRACE[2026-03-21 16:02:40.568][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-03-21 16:02:40.570][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-03-21 16:02:40.573][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799).
sched.INFO [2026-03-21 16:02:41.084][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799". Retrying connection to server...
sched.DEBUG[2026-03-21 16:02:41.085][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-03-21 16:02:41.086][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-03-21 16:02:41.088][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
sched.TRACE[2026-03-21 16:02:41.480][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799 does not exist.
sched.TRACE[2026-03-21 16:02:41.481][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-03-21 16:02:41.507][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-03-21 16:02:41.509][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799).
sched.INFO [2026-03-21 16:02:41.918][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799". Retrying connection to server...
sched.DEBUG[2026-03-21 16:02:41.919][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-03-21 16:02:41.921][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-03-21 16:02:41.922][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
sched.TRACE[2026-03-21 16:02:42.314][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799 does not exist.
sched.TRACE[2026-03-21 16:02:42.315][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-03-21 16:02:42.317][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-03-21 16:02:42.318][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799).
sched.INFO [2026-03-21 16:02:42.727][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799". Retrying connection to server...
sched.DEBUG[2026-03-21 16:02:42.729][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2026-03-21 16:02:42.730][private$doSendRequestLoop] Request body is "".
sched.TRACE[2026-03-21 16:02:42.732][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
sched.TRACE[2026-03-21 16:02:43.124][does_rcurl_request_url_exist] According to RCurl, URL https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799 does not exist.
sched.TRACE[2026-03-21 16:02:43.125][get_url_request_result] Using base::url() for sending request.
sched.DEBUG[2026-03-21 16:02:43.126][get_url_request_result] URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
sched.TRACE[2026-03-21 16:02:43.128][get_base_url_request_result] Using base::url() for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799).
sched.INFO [2026-03-21 16:02:43.537][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799". Retrying connection to server...
fscache.INFO [2026-03-21 16:02:43.539][cch$saveContents] Save 3 contents to /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2026-03-21 16:02:43.541][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2026-03-21 16:02:43.542][self$createEntryFromContent] Creating ChEBI entries from 3 content(s).
biodb.DEBUG[2026-03-21 16:02:43.544][self$createEntryFromContent] Parsing 3 ChEBI entries.
biodb.DEBUG[2026-03-21 16:02:43.546][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2026-03-21 16:02:43.547][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2026-03-21 16:02:43.548][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-03-21 16:02:43.555][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2026-03-21 16:02:43.556][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-03-21 16:02:43.557][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2026-03-21 16:02:43.558][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2026-03-21 16:02:43.560][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-03-21 16:02:43.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-03-21 16:02:43.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:43.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:43.567][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-03-21 16:02:43.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-03-21 16:02:43.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:43.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:43.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:43.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:43.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:43.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2026-03-21 16:02:43.579][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2026-03-21 16:02:43.580][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2026-03-21 16:02:43.581][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-03-21 16:02:43.587][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2026-03-21 16:02:43.588][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-03-21 16:02:43.590][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2026-03-21 16:02:43.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2026-03-21 16:02:43.593][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-03-21 16:02:43.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-03-21 16:02:43.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:43.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:43.598][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-03-21 16:02:43.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-03-21 16:02:43.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:43.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:43.603][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:43.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:43.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:43.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2026-03-21 16:02:43.608][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2026-03-21 16:02:43.609][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2026-03-21 16:02:43.610][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-03-21 16:02:43.617][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2026-03-21 16:02:43.618][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-03-21 16:02:43.619][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2026-03-21 16:02:43.620][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2026-03-21 16:02:43.622][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-03-21 16:02:43.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-03-21 16:02:43.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:43.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:43.627][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2026-03-21 16:02:43.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2026-03-21 16:02:43.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:43.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:43.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:43.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:43.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:43.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:43.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:43.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:43.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:43.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:43.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:43.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:43.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:43.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:43.647][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:43.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:43.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:43.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:43.652][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:43.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:43.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:43.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:43.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:43.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:43.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:43.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:43.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:43.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:43.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:43.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:43.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:43.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:43.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:43.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:43.674][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:43.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:43.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:43.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:43.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:43.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:43.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:43.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:43.684][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:43.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:43.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:43.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:43.689][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:43.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:43.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:43.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:43.694][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:43.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:43.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:43.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:43.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:43.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:43.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:43.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:43.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:43.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:43.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:43.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:43.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2026-03-21 16:02:43.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2026-03-21 16:02:43.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:43.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2026-03-21 16:02:43.721][self$createEntryFromContent] Accession numbers: NA, NA, NA.
biodb.DEBUG[2026-03-21 16:02:43.722][self$createEntryFromContent] Found 3 entry/ies without an accession number. Set it/them to NULL.
Saving _problems/test_long_100_generic-18.R
biodb.INFO [2026-03-21 16:02:43.906][biodb::testThat]
biodb.INFO [2026-03-21 16:02:43.907][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2026-03-21 16:02:43.909][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2026-03-21 16:02:43.910][biodb::testThat]
biodb.TRACE[2026-03-21 16:02:43.914][ef$get] Asked field names are: name.
biodb.TRACE[2026-03-21 16:02:43.915][ef$get] Realnames of fields are: name.
biodb.TRACE[2026-03-21 16:02:43.917][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:43.918][ef$get] fields variable is a list.
biodb.DEBUG[2026-03-21 16:02:43.919][function(conn, opt)] Testing searchForEntries() with entry "15440" and field "name".
Saving _problems/test_long_100_generic-18.R
Saving _problems/test_long_100_generic-18.R
biodb.INFO [2026-03-21 16:02:44.283][biodb::testThat]
biodb.INFO [2026-03-21 16:02:44.285][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2026-03-21 16:02:44.287][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2026-03-21 16:02:44.289][biodb::testThat]
Saving _problems/test_long_100_generic-18.R
Saving _problems/test_long_100_generic-18.R
biodb.INFO [2026-03-21 16:02:44.448][biodb::testThat]
biodb.INFO [2026-03-21 16:02:44.449][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2026-03-21 16:02:44.451][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2026-03-21 16:02:44.452][biodb::testThat]
Saving _problems/test_long_100_generic-18.R
Saving _problems/test_long_100_generic-18.R
biodb.INFO [2026-03-21 16:02:44.593][biodb::testThat]
biodb.INFO [2026-03-21 16:02:44.595][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2026-03-21 16:02:44.596][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2026-03-21 16:02:44.597][biodb::testThat]
biodb.INFO [2026-03-21 16:02:44.609][biodb::testThat]
biodb.INFO [2026-03-21 16:02:44.610][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2026-03-21 16:02:44.612][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2026-03-21 16:02:44.613][biodb::testThat]
biodb.INFO [2026-03-21 16:02:44.624][biodb::testThat]
biodb.INFO [2026-03-21 16:02:44.625][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2026-03-21 16:02:44.626][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2026-03-21 16:02:44.627][biodb::testThat]
biodb.DEBUG[2026-03-21 16:02:44.633][function(conn, opt)] Trying to download "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440".
sched.TRACE[2026-03-21 16:02:57.969][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440).
biodb.INFO [2026-03-21 16:02:58.474][biodb::testThat]
biodb.INFO [2026-03-21 16:02:58.476][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2026-03-21 16:02:58.477][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2026-03-21 16:02:58.478][biodb::testThat]
biodb.TRACE[2026-03-21 16:02:58.505][ef$get] Asked field names are: name.
biodb.TRACE[2026-03-21 16:02:58.506][ef$get] Realnames of fields are: name.
biodb.TRACE[2026-03-21 16:02:58.508][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:58.509][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:58.510][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-03-21 16:02:58.512][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-03-21 16:02:58.513][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:58.514][ef$get] fields variable is a list.
biodb.INFO [2026-03-21 16:02:58.516][biodb::testThat]
biodb.INFO [2026-03-21 16:02:58.518][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2026-03-21 16:02:58.519][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2026-03-21 16:02:58.520][biodb::testThat]
Saving _problems/test_long_100_generic-18.R
Saving _problems/test_long_100_generic-18.R
biodb.INFO [2026-03-21 16:02:58.815][biodb::testThat]
biodb.INFO [2026-03-21 16:02:58.817][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2026-03-21 16:02:58.818][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2026-03-21 16:02:58.820][biodb::testThat]
Saving _problems/test_long_100_generic-18.R
biodb.INFO [2026-03-21 16:02:58.898][biodb::testThat]
biodb.INFO [2026-03-21 16:02:58.899][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2026-03-21 16:02:58.901][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2026-03-21 16:02:58.902][biodb::testThat]
Saving _problems/test_long_100_generic-18.R
biodb.INFO [2026-03-21 16:02:58.978][biodb::testThat]
biodb.INFO [2026-03-21 16:02:58.980][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2026-03-21 16:02:58.981][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2026-03-21 16:02:58.983][biodb::testThat]
Saving _problems/test_long_100_generic-18.R
biodb.TRACE[2026-03-21 16:02:59.056][ef$get] Asked field names are: name.
biodb.TRACE[2026-03-21 16:02:59.058][ef$get] Realnames of fields are: name.
biodb.TRACE[2026-03-21 16:02:59.059][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:59.061][ef$get] fields variable is a list.
biodb.TRACE[2026-03-21 16:02:59.062][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2026-03-21 16:02:59.064][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2026-03-21 16:02:59.066][ef$get] 1 fields were returned.
biodb.TRACE[2026-03-21 16:02:59.067][ef$get] fields variable is a list.
biodb.INFO [2026-03-21 16:02:59.069][biodb::testThat]
biodb.INFO [2026-03-21 16:02:59.071][biodb::testThat] Running test function  test.annotateMzValues_real_values  (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2026-03-21 16:02:59.072][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2026-03-21 16:02:59.074][biodb::testThat]
Saving _problems/test_long_100_generic-18.R
biodb.INFO [2026-03-21 16:02:59.148][biodb::testThat]
biodb.INFO [2026-03-21 16:02:59.149][biodb::testThat] Running test function  test_annotateMzValues_additional_fields  (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2026-03-21 16:02:59.151][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2026-03-21 16:02:59.152][biodb::testThat]
Saving _problems/test_long_100_generic-18.R
biodb.INFO [2026-03-21 16:02:59.223][biodb$terminate] Closing BiodbMain instance...
biodb.INFO [2026-03-21 16:02:59.225][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2026-03-21 16:02:59.226][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2026-03-21 16:02:59.227][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2026-03-21 16:02:59.228][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2026-03-21 16:02:59.229][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2026-03-21 16:02:59.230][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2026-03-21 16:02:59.232][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2026-03-21 16:02:59.233][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 14 | WARN 0 | SKIP 1 | PASS 220 ]

══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• empty test (1):

══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_long_100_generic.R:17:1'): RT unit is defined when there is an RT value. ──
Error in `eval_bare(expr, quo_get_env(quo))`: attempt to apply non-function
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─testthat::expect_true(...)
 4.     └─testthat::quasi_label(enquo(object), label)
 5.       └─rlang::eval_bare(expr, quo_get_env(quo))
── Failure ('test_long_100_generic.R:17:1'): We can search for an entry by searchable field ──
Expected `!is.null(entry)` to be TRUE.
Differences:
`actual`:   FALSE
`expected`: TRUE 

Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─testthat::expect_true(!is.null(entry))
── Error ('test_long_100_generic.R:17:1'): We can search for an entry by searchable field ──
Error in `entry$getFieldValue(f)`: attempt to apply non-function
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
── Failure ('test_long_100_generic.R:17:1'): We can search for an entry by name. ──
Expected `!is.null(entry)` to be TRUE.
Differences:
`actual`:   FALSE
`expected`: TRUE 

Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─testthat::expect_true(!is.null(entry))
── Error ('test_long_100_generic.R:17:1'): We can search for an entry by name. ──
Error in `entry$getFieldValue("name")`: attempt to apply non-function
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
── Failure ('test_long_100_generic.R:17:1'): We can load an entry from the database. ──
Expected `any(vapply(entries, is.null, FUN.VALUE = TRUE))` to be FALSE.
Differences:
`actual`:   TRUE 
`expected`: FALSE

Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─opt$refEntries$getRealEntry(id)
 4.     └─self$getRealEntries(ids = id)
 5.       └─testthat::expect_false(any(vapply(entries, is.null, FUN.VALUE = TRUE)))
── Failure ('test_long_100_generic.R:17:1'): We can load an entry from the database. ──
Expected `e` to inherit from "character".
Actual inheritance: "NULL"
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─testthat::expect_is(e, "BiodbEntry")
── Failure ('test_long_100_generic.R:17:1'): We can search for a compound ──────
Expected `!is.null(entry)` to be TRUE.
Differences:
`actual`:   FALSE
`expected`: TRUE 

Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(db = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─testthat::expect_true(!is.null(entry))
── Error ('test_long_100_generic.R:17:1'): We can search for a compound ────────
Error in `entry$getFieldValue("name")`: attempt to apply non-function
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(db = `<ChebiCnn>`, opt = `<named list>`)
── Error ('test_long_100_generic.R:17:1'): annotateMzValues() accepts a single vector. ──
Error in `e$hasField(mf)`: attempt to apply non-function
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─base::vapply(entries, function(e) e$hasField(mf), FUN.VALUE = TRUE)
 4.     └─biodb (local) FUN(X[[i]], ...)
── Error ('test_long_100_generic.R:17:1'): ppm tolerance works in annotateMzValues() ──
Error in `e$hasField(mf)`: attempt to apply non-function
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─base::vapply(entries, function(e) e$hasField(mf), FUN.VALUE = TRUE)
 4.     └─biodb (local) FUN(X[[i]], ...)
── Error ('test_long_100_generic.R:17:1'): Input data frame is not modified by annotateMzValues() ──
Error in `e$hasField(mf)`: attempt to apply non-function
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─base::vapply(entries, function(e) e$hasField(mf), FUN.VALUE = TRUE)
 4.     └─biodb (local) FUN(X[[i]], ...)
── Error ('test_long_100_generic.R:17:1'): annotateMzValues() works correctly with real values. ──
Error in `e$hasField(mf)`: attempt to apply non-function
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─base::vapply(entries, function(e) e$hasField(mf), FUN.VALUE = TRUE)
 4.     └─biodb (local) FUN(X[[i]], ...)
── Error ('test_long_100_generic.R:17:1'): Additional fields are accepted in annotateMzValues() ──
Error in `e$hasField(mf)`: attempt to apply non-function
Backtrace:
    ▆
 1. ├─base::do.call(fct, params)
 2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
 3.   └─base::vapply(entries, function(e) e$hasField(mf), FUN.VALUE = TRUE)
 4.     └─biodb (local) FUN(X[[i]], ...)

[ FAIL 14 | WARN 0 | SKIP 1 | PASS 220 ]
Error:
! Test failures.
Execution halted

'R CMD check' output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.16.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck’
* using R version 4.5.2 (2025-10-31)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using options ‘--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error’
* checking for file ‘biodbChebi/DESCRIPTION’ ... OK
* this is package ‘biodbChebi’ version ‘1.16.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbChebi’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in ‘longtests’ ... OK
* checking tests in ‘longtests’ ...
  Running ‘testthat.R’
 ERROR
Running the tests in ‘longtests/testthat.R’ failed.
Last 13 lines of output:
   3.   └─base::vapply(entries, function(e) e$hasField(mf), FUN.VALUE = TRUE)
   4.     └─biodb (local) FUN(X[[i]], ...)
  ── Error ('test_long_100_generic.R:17:1'): Additional fields are accepted in annotateMzValues() ──
  Error in `e$hasField(mf)`: attempt to apply non-function
  Backtrace:
      ▆
   1. ├─base::do.call(fct, params)
   2. └─biodb (local) `<fn>`(conn = `<ChebiCnn>`, opt = `<named list>`)
   3.   └─base::vapply(entries, function(e) e$hasField(mf), FUN.VALUE = TRUE)
   4.     └─biodb (local) FUN(X[[i]], ...)
  
  [ FAIL 14 | WARN 0 | SKIP 1 | PASS 220 ]
  Error:
  ! Test failures.
  Execution halted
* DONE

Status: 1 ERROR
See
  ‘/Users/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/00check.log’
for details.

Installation output

biodbChebi.Rcheck/00install.out

* installing *source* package ‘biodbChebi’ ...
** this is package ‘biodbChebi’ version ‘1.16.0’
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbChebi)