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### Running command:
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###   /home/biocbuild/bbs-3.22-bioc-gpu/R/bin/R CMD build --keep-empty-dirs --no-resave-data scviR
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* checking for file ‘scviR/DESCRIPTION’ ... OK
* preparing ‘scviR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘citeseq_tut.Rmd’ using rmarkdown
--- finished re-building ‘citeseq_tut.Rmd’

--- re-building ‘compch12.Rmd’ using rmarkdown
The magick package is required to crop "/tmp/RtmpX5eF4p/Rbuild33d5236e21ce/scviR/vignettes/compch12_files/figure-html/lkkey-1.png" but not available.
The magick package is required to crop "/tmp/RtmpX5eF4p/Rbuild33d5236e21ce/scviR/vignettes/compch12_files/figure-html/lkadt-1.png" but not available.
The magick package is required to crop "/tmp/RtmpX5eF4p/Rbuild33d5236e21ce/scviR/vignettes/compch12_files/figure-html/dosubcl-1.png" but not available.
The magick package is required to crop "/tmp/RtmpX5eF4p/Rbuild33d5236e21ce/scviR/vignettes/compch12_files/figure-html/lkgra-1.png" but not available.
The magick package is required to crop "/tmp/RtmpX5eF4p/Rbuild33d5236e21ce/scviR/vignettes/compch12_files/figure-html/lktotumap-1.png" but not available.
The magick package is required to crop "/tmp/RtmpX5eF4p/Rbuild33d5236e21ce/scviR/vignettes/compch12_files/figure-html/domattot-1.png" but not available.
The magick package is required to crop "/tmp/RtmpX5eF4p/Rbuild33d5236e21ce/scviR/vignettes/compch12_files/figure-html/lkconc-1.png" but not available.
The magick package is required to crop "/tmp/RtmpX5eF4p/Rbuild33d5236e21ce/scviR/vignettes/compch12_files/figure-html/lksubsss-1.png" but not available.
The magick package is required to crop "/tmp/RtmpX5eF4p/Rbuild33d5236e21ce/scviR/vignettes/compch12_files/figure-html/lkgradvi-1.png" but not available.
--- finished re-building ‘compch12.Rmd’

--- re-building ‘new_citeseq.Rmd’ using rmarkdown
/media/volume/biocgpu2/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/ZfL_ZIW0EUjrP_xczE9-s/lib/python3.12/site-packages/muon/_core/preproc.py:31: FutureWarning: `__version__` is deprecated, use `importlib.metadata.version('scanpy')` instead
  if Version(scanpy.__version__) < Version("1.10"):
/media/volume/biocgpu2/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/651a7JfTt4LVmEDs6QpFz/lib/python3.12/site-packages/anndata/_core/anndata.py:1825: UserWarning: Variable names are not unique. To make them unique, call `.var_names_make_unique`.
  utils.warn_names_duplicates("var")
/media/volume/biocgpu2/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/651a7JfTt4LVmEDs6QpFz/lib/python3.12/site-packages/anndata/_core/anndata.py:1825: UserWarning: Variable names are not unique. To make them unique, call `.var_names_make_unique`.
  utils.warn_names_duplicates("var")
/media/volume/biocgpu2/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/ZfL_ZIW0EUjrP_xczE9-s/lib/python3.12/site-packages/mudata/_core/mudata.py:1403: FutureWarning: From 0.4 .update() will not pull obs/var columns from individual modalities by default anymore. Set mudata.set_options(pull_on_update=False) to adopt the new behaviour, which will become the default. Use new pull_obs/pull_var and push_obs/push_var methods for more flexibility.
  self._update_attr("var", axis=0, join_common=join_common)
/media/volume/biocgpu2/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/ZfL_ZIW0EUjrP_xczE9-s/lib/python3.12/site-packages/mudata/_core/mudata.py:571: UserWarning: var_names are not unique. To make them unique, call `.var_names_make_unique`.
  self._update_attr_legacy(attr, axis, join_common, **kwargs)
/media/volume/biocgpu2/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/ZfL_ZIW0EUjrP_xczE9-s/lib/python3.12/site-packages/mudata/_core/mudata.py:1275: FutureWarning: From 0.4 .update() will not pull obs/var columns from individual modalities by default anymore. Set mudata.set_options(pull_on_update=False) to adopt the new behaviour, which will become the default. Use new pull_obs/pull_var and push_obs/push_var methods for more flexibility.
  self._update_attr("obs", axis=1, join_common=join_common)
/media/volume/biocgpu2/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/ZfL_ZIW0EUjrP_xczE9-s/lib/python3.12/site-packages/mudata/_core/mudata.py:1403: FutureWarning: From 0.4 .update() will not pull obs/var columns from individual modalities by default anymore. Set mudata.set_options(pull_on_update=False) to adopt the new behaviour, which will become the default. Use new pull_obs/pull_var and push_obs/push_var methods for more flexibility.
  self._update_attr("var", axis=0, join_common=join_common)
/media/volume/biocgpu2/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/ZfL_ZIW0EUjrP_xczE9-s/lib/python3.12/site-packages/mudata/_core/mudata.py:571: UserWarning: Cannot join columns with the same name because var_names are intersecting.
  self._update_attr_legacy(attr, axis, join_common, **kwargs)
/media/volume/biocgpu2/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/ZfL_ZIW0EUjrP_xczE9-s/lib/python3.12/site-packages/mudata/_core/mudata.py:1275: FutureWarning: From 0.4 .update() will not pull obs/var columns from individual modalities by default anymore. Set mudata.set_options(pull_on_update=False) to adopt the new behaviour, which will become the default. Use new pull_obs/pull_var and push_obs/push_var methods for more flexibility.
  self._update_attr("obs", axis=1, join_common=join_common)
/media/volume/biocgpu2/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/ZfL_ZIW0EUjrP_xczE9-s/lib/python3.12/site-packages/mudata/_core/mudata.py:1403: FutureWarning: From 0.4 .update() will not pull obs/var columns from individual modalities by default anymore. Set mudata.set_options(pull_on_update=False) to adopt the new behaviour, which will become the default. Use new pull_obs/pull_var and push_obs/push_var methods for more flexibility.
  self._update_attr("var", axis=0, join_common=join_common)
/media/volume/biocgpu2/biocbuild/.cache/R/reticulate/uv/cache/archive-v0/ZfL_ZIW0EUjrP_xczE9-s/lib/python3.12/site-packages/mudata/_core/mudata.py:1275: FutureWarning: From 0.4 .update() will not pull obs/var columns from individual modalities by default anymore. Set mudata.set_options(pull_on_update=False) to adopt the new behaviour, which will become the default. Use new pull_obs/pull_var and push_obs/push_var methods for more flexibility.
  self._update_attr("obs", axis=1, join_common=join_common)
INFO     Computing empirical prior initialization for protein background.       
TotalVI Model with the following params: 
n_latent: 20, gene_dispersion: gene, protein_dispersion: protein, 
gene_likelihood: nb, latent_distribution: normal
Training status: Not Trained
Model's adata is minified?: False
Model's adata is minified?: False
GPU available: True (cuda), used: True
TPU available: False, using: 0 TPU cores
💡 Tip: For seamless cloud logging and experiment tracking, try installing [litlogger](https://pypi.org/project/litlogger/) to enable LitLogger, which logs metrics and artifacts automatically to the Lightning Experiments platform.
Exception raised during training. <class 'NameError'> The NVIDIA driver on your system is too old (found version 12020). Please update your GPU driver by downloading and installing a new version from the URL: http://www.nvidia.com/Download/index.aspx Alternatively, go to: https://pytorch.org to install a PyTorch version that has been compiled with your version of the CUDA driver.

Quitting from new_citeseq.Rmd:124-134 [dotrain]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `py_call_impl()`:
! RuntimeError: The NVIDIA driver on your system is too old (found version 12020). Please update your GPU driver by downloading and installing a new version from the URL: http://www.nvidia.com/Download/index.aspx Alternatively, go to: https://pytorch.org to install a PyTorch version that has been compiled with your version of the CUDA driver.
Run `reticulate::py_last_error()` for details.
---
Backtrace:
    ▆
 1. ├─base::system.time(model$train(max_epochs = n_epochs, accelerator = acc))
 2. └─model$train(max_epochs = n_epochs, accelerator = acc)
 3.   └─reticulate:::py_call_impl(callable, call_args$unnamed, call_args$named)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'new_citeseq.Rmd' failed with diagnostics:
RuntimeError: The NVIDIA driver on your system is too old (found version 12020). Please update your GPU driver by downloading and installing a new version from the URL: http://www.nvidia.com/Download/index.aspx Alternatively, go to: https://pytorch.org to install a PyTorch version that has been compiled with your version of the CUDA driver.
Run `reticulate::py_last_error()` for details.
--- failed re-building ‘new_citeseq.Rmd’

--- re-building ‘scviR.Rmd’ using rmarkdown
--- finished re-building ‘scviR.Rmd’

SUMMARY: processing the following file failed:
  ‘new_citeseq.Rmd’

Error: Vignette re-building failed.
Execution halted