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This page was generated on 2025-08-26 07:45 -0400 (Tue, 26 Aug 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| biocgpu | Linux (Ubuntu 24.04.2 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 196 |
| kakapo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 192 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1/1 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| RbowtieCuda 1.0.8 (landing page) Franck RICHARD
| biocgpu | Linux (Ubuntu 24.04.2 LTS) / x86_64 | ERROR | ERROR | skipped | ||||||||
| kakapo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
|
To the developers/maintainers of the RbowtieCuda package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: RbowtieCuda |
| Version: 1.0.8 |
| Command: /home/biocbuild/bbs-3.21-bioc-gpu/R/bin/R CMD build --keep-empty-dirs --no-resave-data RbowtieCuda |
| StartedAt: 2025-08-26 08:48:45 -0000 (Tue, 26 Aug 2025) |
| EndedAt: 2025-08-26 08:50:54 -0000 (Tue, 26 Aug 2025) |
| EllapsedTime: 129.0 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: RbowtieCuda_1.0.8.tar.gz |
| PackageFileSize: 29.16 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.21-bioc-gpu/R/bin/R CMD build --keep-empty-dirs --no-resave-data RbowtieCuda ### ############################################################################## ############################################################################## * checking for file ‘RbowtieCuda/DESCRIPTION’ ... OK * preparing ‘RbowtieCuda’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... OK * cleaning src * checking for LF line-endings in source and make files and shell scripts * checking for empty or unneeded directories WARNING: directory ‘RbowtieCuda/src/nvbio/build/CMakeFiles/3.28.3/CompilerIdC/tmp’ is empty WARNING: directory ‘RbowtieCuda/src/nvbio/build/CMakeFiles/3.28.3/CompilerIdCXX/tmp’ is empty WARNING: directory ‘RbowtieCuda/src/nvbio/build/CMakeFiles/CMakeScratch’ is empty WARNING: directory ‘RbowtieCuda/src/nvbio/build/CMakeFiles/pkgRedirects’ is empty WARNING: directory ‘RbowtieCuda/src/nvbio/build/contrib/moderngpu/CMakeFiles/moderngpu.dir/src’ is empty WARNING: directory ‘RbowtieCuda/src/nvbio/build/nvBowtie/CMakeFiles/nvBowtie.dir/bowtie2/cuda’ is empty WARNING: directory ‘RbowtieCuda/src/nvbio/build/nvbio/CMakeFiles/nvbio.dir/basic/cuda’ is empty WARNING: directory ‘RbowtieCuda/src/nvbio/build/nvbio/CMakeFiles/nvbio.dir/fmindex’ is empty WARNING: directory ‘RbowtieCuda/src/nvbio/build/nvbio/CMakeFiles/nvbio.dir/io/fmindex’ is empty WARNING: directory ‘RbowtieCuda/src/nvbio/build/nvbio/CMakeFiles/nvbio.dir/io/output’ is empty WARNING: directory ‘RbowtieCuda/src/nvbio/build/nvbio/CMakeFiles/nvbio.dir/io/reads’ is empty WARNING: directory ‘RbowtieCuda/src/nvbio/build/nvbio/CMakeFiles/nvbio.dir/io/sequence’ is empty WARNING: directory ‘RbowtieCuda/src/nvbio/build/nvbio/CMakeFiles/nvbio.dir/sufsort’ is empty * building ‘RbowtieCuda_1.0.8.tar.gz’ Warning: file 'RbowtieCuda/src/nvbio/contrib/zlib-1.2.7/configure' did not have execute permissions: corrected