| Back to Multiple platform build/check report for BioC 3.22: simplified long |
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This page was generated on 2025-12-08 12:02 -0500 (Mon, 08 Dec 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4879 |
| merida1 | macOS 12.7.6 Monterey | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4668 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4669 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2052/2361 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| smoppix 1.2.0 (landing page) Stijn Hawinkel
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| merida1 | macOS 12.7.6 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | TIMEOUT | skipped | ||||||||||
|
To the developers/maintainers of the smoppix package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/smoppix.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: smoppix |
| Version: 1.2.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data smoppix |
| StartedAt: 2025-12-04 23:16:21 -0500 (Thu, 04 Dec 2025) |
| EndedAt: 2025-12-04 23:19:50 -0500 (Thu, 04 Dec 2025) |
| EllapsedTime: 208.8 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data smoppix
###
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* checking for file ‘smoppix/DESCRIPTION’ ... OK
* preparing ‘smoppix’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to process help pages
Loading required namespace: smoppix
* saving partial Rd database
* creating vignettes ... ERROR
--- re-building ‘smoppixVignette.Rmd’ using rmarkdown
2025-12-04 23:19:01.463 R[88185:89053843] XType: com.apple.fonts is not accessible.
2025-12-04 23:19:01.463 R[88185:89053843] XType: XTFontStaticRegistry is enabled.
Quitting from smoppixVignette.Rmd:195-197 [fitLmms]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `.makeCC()`:
! must have a numeric 'tol' component
---
Backtrace:
▆
1. └─smoppix::fitLMMs(nnObj, fixedVars = "day", randomVars = "root")
2. └─base::lapply(...)
3. └─smoppix (local) FUN(X[[i]], ...)
4. └─smoppix:::fitLMMsSingle(...)
5. ├─lme4::lmerControl(...)
6. │ └─lme4:::chk.cconv(check.conv.singular, me)
7. └─lme4::.makeCC(action = "ignore", tol = formals(isSingular)$tol)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'smoppixVignette.Rmd' failed with diagnostics:
must have a numeric 'tol' component
--- failed re-building ‘smoppixVignette.Rmd’
SUMMARY: processing the following file failed:
‘smoppixVignette.Rmd’
Error: Vignette re-building failed.
Execution halted