Jack R. Leary
| Snapshot Date: 2025-12-01 13:45 -0500 (Mon, 01 Dec 2025) |
| git_url: https://git.bioconductor.org/packages/scLANE |
| git_branch: RELEASE_3_22 |
| git_last_commit: 571c617 |
| git_last_commit_date: 2025-10-29 11:38:52 -0500 (Wed, 29 Oct 2025) |
| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-12-04 12:02 -0500 (Thu, 04 Dec 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4878 |
| merida1 | macOS 12.7.6 Monterey | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4624 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4669 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1932/2361 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| scLANE 1.0.0 (landing page) Jack R. Leary
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.6 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the scLANE package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/scLANE.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: scLANE |
| Version: 1.0.0 |
| Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data scLANE |
| StartedAt: 2025-12-02 04:46:14 -0000 (Tue, 02 Dec 2025) |
| EndedAt: 2025-12-02 04:48:16 -0000 (Tue, 02 Dec 2025) |
| EllapsedTime: 122.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data scLANE
###
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* checking for file ‘scLANE/DESCRIPTION’ ... OK
* preparing ‘scLANE’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘scLANE.Rmd’ using rmarkdown
Quitting from scLANE.Rmd:303-313 [unnamed-chunk-17]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! Failed to connect to biit.cs.ut.ee port 80 after 748 ms: Could not connect to server
---
Backtrace:
▆
1. ├─scLANE::enrichDynamicGenes(scLANE_de_res, species = "hsapiens")
2. │ └─gprofiler2::gost(...)
3. │ └─gprofiler2::get_version_info(organism = organism)
4. │ └─gprofiler2:::gprofiler_request(url, body)
5. │ └─RCurl::curlPerform(...)
6. └─RCurl (local) `<fn>`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'scLANE.Rmd' failed with diagnostics:
Failed to connect to biit.cs.ut.ee port 80 after 748 ms: Could not connect to server
--- failed re-building ‘scLANE.Rmd’
SUMMARY: processing the following file failed:
‘scLANE.Rmd’
Error: Vignette re-building failed.
Execution halted