Multiple platform build/check report for BioC 3.22 - BUILD results for qsvaR on taishan

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.3 LTS)	x86_64	4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root"	4902
taishan	Linux (openEuler 24.03 LTS)	aarch64	4.5.0 (2025-04-11) -- "How About a Twenty-Six"	4668
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for qsvaR on taishan

To the developers/maintainers of the qsvaR package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/qsvaR.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results

Summary

Package: qsvaR

Version: 1.14.0

Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data qsvaR

StartedAt: 2025-11-11 04:18:42 -0000 (Tue, 11 Nov 2025)

EndedAt: 2025-11-11 04:19:43 -0000 (Tue, 11 Nov 2025)

EllapsedTime: 61.0 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data qsvaR
###
##############################################################################
##############################################################################


* checking for file ‘qsvaR/DESCRIPTION’ ... OK
* preparing ‘qsvaR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘Intro_qsvaR.Rmd’ using rmarkdown

Quitting from Intro_qsvaR.Rmd:138-150 [Download demo dataset]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `load()`:
! error reading from connection
---
Backtrace:
    ▆
 1. └─base::load(rse_file, verbose = TRUE)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'Intro_qsvaR.Rmd' failed with diagnostics:
error reading from connection
--- failed re-building ‘Intro_qsvaR.Rmd’

SUMMARY: processing the following file failed:
  ‘Intro_qsvaR.Rmd’

Error: Vignette re-building failed.
Execution halted