Back to Multiple platform build/check report for BioC 3.21:   simplified   long
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This page was generated on 2025-10-06 11:38 -0400 (Mon, 06 Oct 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 4832
merida1macOS 12.7.5 Montereyx86_644.5.1 RC (2025-06-05 r88288) -- "Great Square Root" 4613
kjohnson1macOS 13.6.6 Venturaarm644.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" 4554
kunpeng2Linux (openEuler 24.03 LTS)aarch64R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" 4585
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1324/2341HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
mobileRNA 1.4.0  (landing page)
Katie Jeynes-Cupper
Snapshot Date: 2025-10-02 13:40 -0400 (Thu, 02 Oct 2025)
git_url: https://git.bioconductor.org/packages/mobileRNA
git_branch: RELEASE_3_21
git_last_commit: 4bf936d
git_last_commit_date: 2025-04-15 13:29:13 -0400 (Tue, 15 Apr 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.7.5 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson1macOS 13.6.6 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 24.03 LTS) / aarch64  OK    OK    OK  


CHECK results for mobileRNA on nebbiolo1

To the developers/maintainers of the mobileRNA package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/mobileRNA.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: mobileRNA
Version: 1.4.0
Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:mobileRNA.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings mobileRNA_1.4.0.tar.gz
StartedAt: 2025-10-06 01:09:11 -0400 (Mon, 06 Oct 2025)
EndedAt: 2025-10-06 01:15:11 -0400 (Mon, 06 Oct 2025)
EllapsedTime: 360.4 seconds
RetCode: 0
Status:   OK  
CheckDir: mobileRNA.Rcheck
Warnings: 0

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:mobileRNA.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings mobileRNA_1.4.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.21-bioc/meat/mobileRNA.Rcheck’
* using R version 4.5.1 (2025-06-13)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* checking for file ‘mobileRNA/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘mobileRNA’ version ‘1.4.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... INFO
Imports includes 24 non-default packages.
Importing from so many packages makes the package vulnerable to any of
them becoming unavailable.  Move as many as possible to Suggests and
use conditionally.
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘mobileRNA’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                          user system elapsed
RNAdistribution         13.667  0.075  13.743
RNAdicercall            10.338  0.073  10.411
RNAsubset               10.262  0.004  10.268
RNAdifferentialAnalysis  8.140  0.137   8.280
RNAsummary               6.650  0.068   7.072
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

mobileRNA.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL mobileRNA
###
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* installing to library ‘/home/biocbuild/bbs-3.21-bioc/R/site-library’
* installing *source* package ‘mobileRNA’ ...
** this is package ‘mobileRNA’ version ‘1.4.0’
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mobileRNA)

Tests output


Example timings

mobileRNA.Rcheck/mobileRNA-Ex.timings

nameusersystemelapsed
RNAattributes1.1750.0251.200
RNAdf2se0.2480.0070.256
RNAdicercall10.338 0.07310.411
RNAdifferentialAnalysis8.1400.1378.280
RNAdistribution13.667 0.07513.743
RNAfeatures1.2520.0161.267
RNAimport000
RNAmergeAnnotations0.2800.0030.283
RNAmergeGenomes0.0420.0020.045
RNAmobile0.5900.0050.595
RNApopulation1.8960.0021.898
RNAreorder0.1610.0010.162
RNAsequences1.3110.0071.320
RNAsubset10.262 0.00410.268
RNAsummary6.6500.0687.072
mRNA_data0.0430.0000.043
mapRNA0.0000.0010.000
plotHeatmap0.8250.0010.954
plotRNAfeatures1.3940.0081.408
plotSampleDistance3.0920.0113.222
plotSamplePCA4.6020.0504.681
sRNA_data0.2270.0050.232