Till Soerensen
| Snapshot Date: 2025-11-27 13:45 -0500 (Thu, 27 Nov 2025) |
| git_url: https://git.bioconductor.org/packages/immunoClust |
| git_branch: RELEASE_3_22 |
| git_last_commit: 3c4237c |
| git_last_commit_date: 2025-10-29 10:24:29 -0500 (Wed, 29 Oct 2025) |
| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-12-01 12:02 -0500 (Mon, 01 Dec 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4878 |
| merida1 | macOS 12.7.6 Monterey | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4610 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4669 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1051/2361 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| immunoClust 1.42.0 (landing page) Till Soerensen
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.6 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the immunoClust package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/immunoClust.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: immunoClust |
| Version: 1.42.0 |
| Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunoClust |
| StartedAt: 2025-11-28 02:28:43 -0000 (Fri, 28 Nov 2025) |
| EndedAt: 2025-11-28 02:32:20 -0000 (Fri, 28 Nov 2025) |
| EllapsedTime: 217.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
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###
### Running command:
###
### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunoClust
###
##############################################################################
##############################################################################
* checking for file ‘immunoClust/DESCRIPTION’ ... OK
* preparing ‘immunoClust’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘immunoClust.Rnw’ using Sweave
Loading required package: flowCore
filtered from above:318
filtered from below:0
cluster 1(N=151) has 2 sub-cluster at 2 (9), ICL=146<>26
split 1 into 2 clusters
cluster 1(N=151) has 2 sub-cluster at 2 (9), ICL=0<>26
Model Refinement takes 0.017 mins(max 1: 0.017)
Fit Model 1 of (6/10) K=1->2 N=302
EM 2 takes 0 mins, 6 iterations
cluster 2(N=85) has 2 sub-cluster at 2 (5), ICL=119<>30
split 2 into 2 clusters
cluster 1(N=217) has 2 sub-cluster at 2 (5), ICL=19<>30
cluster 1(N=217) has 2 sub-cluster at 2 (5), ICL=0<>30
Model Refinement takes 0.033 mins(max 1: 0.017)
Fit Model 2 of (6/10) K=2->3 N=605
EM 3 takes 0 mins, 8 iterations
cluster 2(N=129) has 2 sub-cluster at 2 (7), ICL=91<>34
split 2 into 2 clusters
cluster 1(N=414) has 2 sub-cluster at 2 (17), ICL=53<>34
split 1 into 2 clusters
cluster 3(N=64) has 2 sub-cluster at 2 (4), ICL=15<>34
cluster 1(N=414) has 2 sub-cluster at 2 (17), ICL=0<>34
Model Refinement takes 0.05 mins(max 1: 0.033)
Fit Model 3 of (6/10) K=3->5 N=1210
EM 5 takes 0 mins, 9 iterations
cluster 3(N=115) has 2 sub-cluster at 2 (6), ICL=65<>37
split 3 into 2 clusters
cluster 5(N=139) has 2 sub-cluster at 2 (11), ICL=45<>37
split 5 into 2 clusters
cluster 1(N=61) has 2 sub-cluster at 2 (10), ICL=35<>37
cluster 4(N=137) has 5 sub-cluster at 6 (23), ICL=13<>37
cluster 1(N=61) has 2 sub-cluster at 2 (10), ICL=0<>37
Model Refinement takes 0.083 mins(max 3: 0.033)
Fit Model 4 of (6/10) K=5->7 N=2420
EM 7 takes 0 mins, 7 iterations
cluster 1(N=111) has 2 sub-cluster at 2 (11), ICL=65<>41
split 1 into 2 clusters
cluster 7(N=20) has 2 sub-cluster at 2 (100), ICL=41<>41
split 7 into 2 clusters
cluster 5(N=290) has 2 sub-cluster at 2 (6), ICL=37<>41
cluster 3(N=100) has 5 sub-cluster at 5 (47), ICL=23<>41
cluster 4(N=115) has 3 sub-cluster at 3 (14), ICL=13<>41
cluster 6(N=200) has 7 sub-cluster at 7 (28), ICL=9.8<>41
cluster 1(N=111) has 2 sub-cluster at 2 (11), ICL=0<>41
Model Refinement takes 0.15 mins(max 2: 0.05)
Fit Model 5 of (6/10) K=7->9 N=4841
EM 8 takes 0 mins, 6 iterations
cluster 1(N=99) has 2 sub-cluster at 2 (7), ICL=51<>45
split 1 into 2 clusters
cluster 6(N=568) has 2 sub-cluster at 2 (6), ICL=45<>45
split 6 into 2 clusters
cluster 7(N=472) has 3 sub-cluster at 3 (21), ICL=37<>45
cluster 5(N=281) has 2 sub-cluster at 2 (22), ICL=32<>45
cluster 2(N=137) has 5 sub-cluster at 5 (69), ICL=28<>45
cluster 4(N=196) has 4 sub-cluster at 4 (17), ICL=22<>45
cluster 1(N=99) has 2 sub-cluster at 2 (7), ICL=0<>45
Model Refinement takes 0.18 mins(max 3: 0.05)
Fit Model 6 of (6/10) K=8->10 N=9682
EM 10 takes 0 mins, 5 iterations
cluster 6(N=557) has 3 sub-cluster at 3 (11), ICL=65<>48
split 6 into 3 clusters
cluster 9(N=916) has 3 sub-cluster at 3 (10), ICL=52<>48
split 9 into 3 clusters
cluster 5(N=392) has 2 sub-cluster at 2 (13), ICL=41<>48
cluster 1(N=123) has 2 sub-cluster at 2 (8), ICL=30<>48
cluster 7(N=427) has 2 sub-cluster at 2 (16), ICL=14<>48
cluster 2(N=76) has 4 sub-cluster at 5 (16), ICL=11<>48
cluster 3(N=314) has 2 sub-cluster at 2 (9), ICL=4.8<>48
cluster 1(N=123) has 2 sub-cluster at 2 (8), ICL=0<>48
Model Refinement takes 0.25 mins(max 4: 0.067)
Fit Model 7 of (6/10) K=10->14 N=9682
EM 14 takes 0 mins, 3 iterations
cluster 5(N=391) has 2 sub-cluster at 2 (8), ICL=37<>48
cluster 1(N=123) has 2 sub-cluster at 2 (8), ICL=30<>48
cluster 8(N=77) has 2 sub-cluster at 2 (18), ICL=17<>48
cluster 9(N=422) has 4 sub-cluster at 4 (34), ICL=17<>48
cluster 6(N=356) has 8 sub-cluster at 8 (42), ICL=10<>48
cluster 7(N=181) has 5 sub-cluster at 6 (34), ICL=8.7<>48
cluster 3(N=309) has 8 sub-cluster at 8 (54), ICL=7.3<>48
cluster 13(N=51) has 2 sub-cluster at 2 (100), ICL=5.4<>48
cluster 2(N=75) has 3 sub-cluster at 4 (12), ICL=4<>48
cluster 1(N=123) has 2 sub-cluster at 2 (8), ICL=0<>48
Model Refinement takes 0.3 mins(max 4: 0.067)
Fit Model 8 of (6/10) K=14->14 N=9682
EM 14 takes 0.017 mins, 3 iterations
Process completed at8
Major Iteration (Trans) (6/4) takes 1.1 mins
filtered from above:318
filtered from below:0
cluster 1(N=151) has 2 sub-cluster at 2 (10), ICL=165<>22
split 1 into 2 clusters
cluster 1(N=151) has 2 sub-cluster at 2 (10), ICL=0<>22
Model Refinement takes 0.017 mins(max 1: 0.017)
Fit Model 1 of (6/10) K=1->2 N=302
EM 2 takes 0 mins, 7 iterations
cluster 2(N=76) has 3 sub-cluster at 3 (9), ICL=88<>25
split 2 into 3 clusters
cluster 1(N=227) has 2 sub-cluster at 2 (8), ICL=21<>25
cluster 1(N=227) has 2 sub-cluster at 2 (8), ICL=0<>25
Model Refinement takes 0.033 mins(max 1: 0.017)
Fit Model 2 of (6/10) K=2->4 N=605
EM 4 takes 0 mins, 8 iterations
cluster 1(N=428) has 2 sub-cluster at 2 (5), ICL=41<>28
split 1 into 2 clusters
cluster 4(N=43) has 4 sub-cluster at 4 (5), ICL=26<>28
cluster 2(N=79) has 3 sub-cluster at 3 (11), ICL=25<>28
cluster 3(N=55) has 3 sub-cluster at 3 (23), ICL=20<>28
cluster 1(N=428) has 2 sub-cluster at 2 (5), ICL=0<>28
Model Refinement takes 0.067 mins(max 1: 0.017)
Fit Model 3 of (6/10) K=4->5 N=1210
EM 5 takes 0 mins, 10 iterations
cluster 5(N=112) has 2 sub-cluster at 2 (14), ICL=63<>31
split 5 into 2 clusters
cluster 4(N=122) has 2 sub-cluster at 2 (7), ICL=48<>31
split 4 into 2 clusters
cluster 2(N=25) has 2 sub-cluster at 2 (6), ICL=36<>31
split 2 into 2 clusters
cluster 3(N=130) has 7 sub-cluster at 7 (25), ICL=15<>31
cluster 2(N=25) has 2 sub-cluster at 2 (6), ICL=0<>31
Model Refinement takes 0.083 mins(max 1: 0.033)
Fit Model 4 of (6/10) K=5->8 N=2420
EM 8 takes 0.017 mins, 12 iterations
cluster 6(N=11) has 2 sub-cluster at 2 (100), ICL=100<>34
split 6 into 2 clusters
cluster 5(N=228) has 4 sub-cluster at 4 (14), ICL=39<>34
split 5 into 4 clusters
cluster 3(N=17) has 2 sub-cluster at 2 (100), ICL=34<>34
split 3 into 2 clusters
cluster 8(N=90) has 6 sub-cluster at 6 (31), ICL=28<>34
cluster 7(N=153) has 2 sub-cluster at 2 (14), ICL=22<>34
cluster 4(N=280) has 6 sub-cluster at 6 (31), ICL=17<>34
cluster 2(N=29) has 2 sub-cluster at 2 (14), ICL=12<>34
cluster 1(N=1625) has 4 sub-cluster at 4 (6), ICL=6.8<>34
cluster 1(N=1625) has 4 sub-cluster at 4 (6), ICL=0<>34
Model Refinement takes 0.13 mins(max 1: 0.05)
Fit Model 5 of (6/10) K=8->13 N=4841
EM 11 takes 0 mins, 9 iterations
cluster 3(N=40) has 2 sub-cluster at 2 (100), ICL=55<>37
split 3 into 2 clusters
cluster 10(N=279) has 3 sub-cluster at 3 (10), ICL=35<>37
cluster 1(N=3234) has 3 sub-cluster at 3 (6), ICL=33<>37
cluster 11(N=206) has 4 sub-cluster at 4 (31), ICL=25<>37
cluster 2(N=77) has 4 sub-cluster at 4 (9), ICL=25<>37
cluster 6(N=121) has 5 sub-cluster at 8 (72), ICL=18<>37
cluster 5(N=243) has 8 sub-cluster at 8 (33), ICL=18<>37
cluster 4(N=541) has 2 sub-cluster at 2 (7), ICL=16<>37
cluster 7(N=187) has 8 sub-cluster at 8 (26), ICL=11<>37
cluster 9(N=19) has 3 sub-cluster at 3 (45), ICL=0.12<>37
cluster 1(N=3234) has 3 sub-cluster at 3 (6), ICL=0<>37
Model Refinement takes 0.18 mins(max 1: 0.05)
Fit Model 6 of (6/10) K=11->12 N=9682
EM 9 takes 0.017 mins, 9 iterations
cluster 1(N=6484) has 3 sub-cluster at 3 (7), ICL=72<>40
split 1 into 3 clusters
cluster 8(N=555) has 3 sub-cluster at 3 (9), ICL=65<>40
split 8 into 3 clusters
cluster 2(N=155) has 4 sub-cluster at 4 (20), ICL=46<>40
split 2 into 4 clusters
cluster 4(N=1120) has 2 sub-cluster at 2 (10), ICL=42<>40
split 4 into 2 clusters
cluster 9(N=391) has 2 sub-cluster at 2 (6), ICL=38<>40
cluster 6(N=391) has 2 sub-cluster at 2 (11), ICL=14<>40
cluster 3(N=74) has 4 sub-cluster at 4 (19), ICL=8.5<>40
cluster 1(N=6484) has 3 sub-cluster at 3 (7), ICL=0<>40
Model Refinement takes 0.23 mins(max 1: 0.067)
Fit Model 7 of (6/10) K=9->17 N=9682
EM 17 takes 0.033 mins, 13 iterations
cluster 6(N=15) has 2 sub-cluster at 2 (100), ICL=66<>40
split 6 into 2 clusters
cluster 17(N=390) has 2 sub-cluster at 2 (13), ICL=43<>40
split 17 into 2 clusters
cluster 16(N=87) has 5 sub-cluster at 5 (10), ICL=24<>40
cluster 12(N=398) has 2 sub-cluster at 2 (17), ICL=21<>40
cluster 14(N=380) has 7 sub-cluster at 7 (31), ICL=18<>40
cluster 7(N=34) has 2 sub-cluster at 2 (7), ICL=17<>40
cluster 15(N=167) has 6 sub-cluster at 8 (41), ICL=16<>40
cluster 4(N=92) has 5 sub-cluster at 5 (34), ICL=15<>40
cluster 5(N=22) has 2 sub-cluster at 2 (7), ICL=12<>40
cluster 13(N=51) has 2 sub-cluster at 2 (14), ICL=11<>40
cluster 3(N=301) has 2 sub-cluster at 2 (8), ICL=6.2<>40
cluster 8(N=74) has 2 sub-cluster at 3 (15), ICL=3.3<>40
cluster 10(N=424) has 7 sub-cluster at 8 (29), ICL=0.16<>40
cluster 3(N=301) has 2 sub-cluster at 2 (8), ICL=0<>40
Model Refinement takes 0.35 mins(max 2: 0.067)
Fit Model 8 of (6/10) K=17->19 N=9682
EM 18 takes 0.017 mins, 6 iterations
cluster 6(N=11) has 2 sub-cluster at 2 (100), ICL=35<>40
cluster 16(N=88) has 3 sub-cluster at 3 (21), ICL=21<>40
cluster 7(N=36) has 2 sub-cluster at 2 (9), ICL=17<>40
cluster 17(N=223) has 4 sub-cluster at 4 (16), ICL=15<>40
cluster 14(N=381) has 2 sub-cluster at 2 (5), ICL=14<>40
cluster 5(N=20) has 2 sub-cluster at 2 (10), ICL=14<>40
cluster 18(N=217) has 8 sub-cluster at 8 (35), ICL=13<>40
cluster 15(N=167) has 6 sub-cluster at 8 (37), ICL=11<>40
cluster 4(N=96) has 2 sub-cluster at 2 (27), ICL=11<>40
cluster 13(N=51) has 2 sub-cluster at 2 (14), ICL=11<>40
cluster 12(N=399) has 3 sub-cluster at 3 (29), ICL=9.4<>40
cluster 3(N=302) has 8 sub-cluster at 8 (41), ICL=8.2<>40
cluster 8(N=74) has 2 sub-cluster at 3 (22), ICL=4.6<>40
cluster 3(N=302) has 8 sub-cluster at 8 (41), ICL=0<>40
Model Refinement takes 0.35 mins(max 2: 0.067)
Fit Model 9 of (6/10) K=18->18 N=9682
EM 18 takes 0 mins, 3 iterations
Process completed at9
Major Iteration (Trans) (6/4) takes 1.6 mins
Fit Model 1 of 10 with 8 clusters
=> results in 8 clusters
Fit Model 2 of 10 with 21 clusters
=> results in 13 clusters
Fit Model 3 of 10 with 23 clusters
=> results in 19 clusters
Fit Model 4 of 10 with 26 clusters
=> results in 21 clusters
Fit Model 5 of 10 with 25 clusters
=> results in 21 clusters
Error: processing vignette 'immunoClust.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'immunoClust.tex' failed.
LaTeX errors:
! LaTeX Error: File `inputenx.sty' not found.
Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)
! Emergency stop.
<read *>
l.15 ^^M
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘immunoClust.Rnw’
SUMMARY: processing the following file failed:
‘immunoClust.Rnw’
Error: Vignette re-building failed.
Execution halted