Till Soerensen
| Snapshot Date: 2025-11-11 13:45 -0500 (Tue, 11 Nov 2025) |
| git_url: https://git.bioconductor.org/packages/immunoClust |
| git_branch: RELEASE_3_22 |
| git_last_commit: 3c4237c |
| git_last_commit_date: 2025-10-29 10:24:29 -0500 (Wed, 29 Oct 2025) |
| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-11-12 11:58 -0500 (Wed, 12 Nov 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" | 4902 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4668 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1051/2361 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| immunoClust 1.42.0 (landing page) Till Soerensen
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the immunoClust package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/immunoClust.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: immunoClust |
| Version: 1.42.0 |
| Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunoClust |
| StartedAt: 2025-11-11 02:34:18 -0000 (Tue, 11 Nov 2025) |
| EndedAt: 2025-11-11 02:38:13 -0000 (Tue, 11 Nov 2025) |
| EllapsedTime: 234.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunoClust
###
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* checking for file ‘immunoClust/DESCRIPTION’ ... OK
* preparing ‘immunoClust’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘immunoClust.Rnw’ using Sweave
Loading required package: flowCore
filtered from above:318
filtered from below:0
cluster 1(N=151) has 2 sub-cluster at 2 (11), ICL=151<>26
split 1 into 2 clusters
cluster 1(N=151) has 2 sub-cluster at 2 (11), ICL=0<>26
Model Refinement takes 0.017 mins(max 1: 0.017)
Fit Model 1 of (6/10) K=1->2 N=302
EM 2 takes 0 mins, 10 iterations
cluster 2(N=100) has 2 sub-cluster at 2 (6), ICL=136<>30
split 2 into 2 clusters
cluster 1(N=203) has 7 sub-cluster at 7 (57), ICL=16<>30
cluster 1(N=203) has 7 sub-cluster at 7 (57), ICL=0<>30
Model Refinement takes 0.05 mins(max 2: 0.033)
Fit Model 2 of (6/10) K=2->3 N=605
EM 3 takes 0 mins, 6 iterations
cluster 2(N=123) has 2 sub-cluster at 2 (5), ICL=92<>34
split 2 into 2 clusters
cluster 1(N=425) has 2 sub-cluster at 2 (6), ICL=59<>34
split 1 into 2 clusters
cluster 3(N=58) has 5 sub-cluster at 6 (38), ICL=22<>34
cluster 1(N=425) has 2 sub-cluster at 2 (6), ICL=0<>34
Model Refinement takes 0.05 mins(max 1: 0.017)
Fit Model 3 of (6/10) K=3->5 N=1210
EM 5 takes 0 mins, 8 iterations
cluster 4(N=109) has 2 sub-cluster at 3 (9), ICL=66<>37
split 4 into 2 clusters
cluster 2(N=59) has 2 sub-cluster at 2 (9), ICL=35<>37
cluster 5(N=133) has 6 sub-cluster at 7 (43), ICL=23<>37
cluster 3(N=138) has 5 sub-cluster at 5 (41), ICL=18<>37
cluster 2(N=59) has 2 sub-cluster at 2 (9), ICL=0<>37
Model Refinement takes 0.083 mins(max 1: 0.033)
Fit Model 4 of (6/10) K=5->6 N=2420
EM 6 takes 0 mins, 7 iterations
cluster 2(N=110) has 3 sub-cluster at 3 (9), ICL=53<>41
split 2 into 3 clusters
cluster 6(N=237) has 2 sub-cluster at 2 (16), ICL=38<>41
cluster 3(N=287) has 2 sub-cluster at 2 (7), ICL=29<>41
cluster 4(N=90) has 7 sub-cluster at 7 (73), ICL=24<>41
cluster 5(N=135) has 3 sub-cluster at 3 (15), ICL=19<>41
cluster 2(N=110) has 3 sub-cluster at 3 (9), ICL=0<>41
Model Refinement takes 0.13 mins(max 1: 0.05)
Fit Model 5 of (6/10) K=6->8 N=4841
EM 8 takes 0.017 mins, 9 iterations
cluster 8(N=483) has 2 sub-cluster at 2 (6), ICL=87<>45
split 8 into 2 clusters
cluster 5(N=596) has 2 sub-cluster at 2 (6), ICL=33<>45
cluster 7(N=263) has 3 sub-cluster at 3 (7), ICL=29<>45
cluster 3(N=72) has 4 sub-cluster at 4 (13), ICL=28<>45
cluster 6(N=185) has 5 sub-cluster at 5 (36), ICL=20<>45
cluster 4(N=34) has 3 sub-cluster at 3 (13), ICL=17<>45
cluster 2(N=163) has 6 sub-cluster at 8 (27), ICL=7.1<>45
cluster 2(N=163) has 6 sub-cluster at 8 (27), ICL=0<>45
Model Refinement takes 0.17 mins(max 1: 0.05)
Fit Model 6 of (6/10) K=8->9 N=9682
EM 9 takes 0.017 mins, 6 iterations
cluster 7(N=556) has 3 sub-cluster at 3 (11), ICL=65<>48
split 7 into 3 clusters
cluster 5(N=1121) has 2 sub-cluster at 2 (11), ICL=51<>48
split 5 into 2 clusters
cluster 3(N=153) has 4 sub-cluster at 4 (17), ICL=43<>48
cluster 6(N=392) has 3 sub-cluster at 3 (34), ICL=38<>48
cluster 9(N=60) has 2 sub-cluster at 2 (13), ICL=31<>48
cluster 8(N=908) has 3 sub-cluster at 3 (12), ICL=29<>48
cluster 4(N=75) has 3 sub-cluster at 4 (40), ICL=6.2<>48
cluster 2(N=316) has 7 sub-cluster at 8 (37), ICL=0.64<>48
cluster 2(N=316) has 7 sub-cluster at 8 (37), ICL=0<>48
Model Refinement takes 0.23 mins(max 1: 0.067)
Fit Model 7 of (6/10) K=9->12 N=9682
EM 12 takes 0.017 mins, 7 iterations
cluster 7(N=391) has 2 sub-cluster at 2 (8), ICL=37<>48
cluster 12(N=60) has 2 sub-cluster at 2 (9), ICL=30<>48
cluster 11(N=898) has 3 sub-cluster at 3 (9), ICL=29<>48
cluster 3(N=122) has 3 sub-cluster at 3 (28), ICL=26<>48
cluster 4(N=74) has 5 sub-cluster at 6 (68), ICL=19<>48
cluster 6(N=405) has 2 sub-cluster at 3 (4), ICL=18<>48
cluster 10(N=88) has 2 sub-cluster at 2 (7), ICL=18<>48
cluster 8(N=362) has 2 sub-cluster at 2 (6), ICL=12<>48
cluster 2(N=309) has 2 sub-cluster at 2 (8), ICL=6.5<>48
cluster 9(N=175) has 6 sub-cluster at 8 (36), ICL=4.9<>48
cluster 2(N=309) has 2 sub-cluster at 2 (8), ICL=0<>48
Model Refinement takes 0.28 mins(max 1: 0.067)
Fit Model 8 of (6/10) K=12->12 N=9682
EM 12 takes 0.017 mins, 3 iterations
Process completed at8
Major Iteration (Trans) (6/4) takes 1.1 mins
filtered from above:318
filtered from below:0
cluster 1(N=151) has 2 sub-cluster at 2 (10), ICL=157<>22
split 1 into 2 clusters
cluster 1(N=151) has 2 sub-cluster at 2 (10), ICL=0<>22
Model Refinement takes 0 mins(max 1: 0)
Fit Model 1 of (6/10) K=1->2 N=302
EM 2 takes 0 mins, 9 iterations
cluster 2(N=96) has 2 sub-cluster at 2 (6), ICL=138<>25
split 2 into 2 clusters
cluster 1(N=209) has 2 sub-cluster at 2 (9), ICL=35<>25
split 1 into 2 clusters
cluster 1(N=209) has 2 sub-cluster at 2 (9), ICL=0<>25
Model Refinement takes 0.033 mins(max 1: 0.017)
Fit Model 2 of (6/10) K=2->4 N=605
EM 4 takes 0 mins, 10 iterations
cluster 3(N=123) has 2 sub-cluster at 2 (5), ICL=108<>28
split 3 into 2 clusters
cluster 4(N=74) has 2 sub-cluster at 2 (100), ICL=48<>28
split 4 into 2 clusters
cluster 2(N=33) has 2 sub-cluster at 2 (12), ICL=18<>28
cluster 1(N=381) has 8 sub-cluster at 8 (37), ICL=9.5<>28
cluster 1(N=381) has 8 sub-cluster at 8 (37), ICL=0<>28
Model Refinement takes 0.05 mins(max 1: 0.033)
Fit Model 3 of (6/10) K=4->6 N=1210
EM 6 takes 0 mins, 50 iterations
cluster 5(N=126) has 2 sub-cluster at 2 (100), ICL=91<>31
split 5 into 2 clusters
cluster 3(N=102) has 2 sub-cluster at 2 (8), ICL=54<>31
split 3 into 2 clusters
cluster 2(N=44) has 3 sub-cluster at 3 (12), ICL=27<>31
cluster 4(N=151) has 8 sub-cluster at 8 (36), ICL=21<>31
cluster 2(N=44) has 3 sub-cluster at 3 (12), ICL=0<>31
Model Refinement takes 0.067 mins(max 1: 0.033)
Fit Model 4 of (6/10) K=6->8 N=2420
EM 8 takes 0 mins, 10 iterations
cluster 8(N=8) has 2 sub-cluster at 2 (100), ICL=61<>34
split 8 into 2 clusters
cluster 2(N=109) has 3 sub-cluster at 3 (13), ICL=58<>34
split 2 into 3 clusters
cluster 3(N=141) has 3 sub-cluster at 3 (14), ICL=27<>34
cluster 4(N=93) has 4 sub-cluster at 4 (33), ICL=23<>34
cluster 5(N=279) has 2 sub-cluster at 2 (6), ICL=23<>34
cluster 6(N=224) has 4 sub-cluster at 4 (22), ICL=16<>34
cluster 2(N=109) has 3 sub-cluster at 3 (13), ICL=0<>34
Model Refinement takes 0.15 mins(max 1: 0.05)
Fit Model 5 of (6/10) K=8->11 N=4841
EM 9 takes 0.017 mins, 17 iterations
cluster 8(N=463) has 3 sub-cluster at 3 (12), ICL=57<>37
split 8 into 3 clusters
cluster 5(N=285) has 3 sub-cluster at 3 (6), ICL=43<>37
split 5 into 3 clusters
cluster 3(N=78) has 3 sub-cluster at 3 (20), ICL=32<>37
cluster 7(N=568) has 2 sub-cluster at 2 (7), ICL=31<>37
cluster 6(N=214) has 6 sub-cluster at 7 (66), ICL=26<>37
cluster 2(N=148) has 5 sub-cluster at 6 (31), ICL=16<>37
cluster 2(N=148) has 5 sub-cluster at 6 (31), ICL=0<>37
Model Refinement takes 0.18 mins(max 1: 0.067)
Fit Model 6 of (6/10) K=9->13 N=9682
EM 13 takes 0.017 mins, 10 iterations
cluster 13(N=9) has 2 sub-cluster at 2 (100), ICL=54<>40
split 13 into 2 clusters
cluster 3(N=158) has 4 sub-cluster at 4 (16), ICL=45<>40
split 3 into 4 clusters
cluster 9(N=1121) has 2 sub-cluster at 2 (6), ICL=40<>40
cluster 8(N=391) has 2 sub-cluster at 2 (8), ICL=40<>40
cluster 12(N=43) has 2 sub-cluster at 2 (100), ICL=21<>40
cluster 11(N=396) has 2 sub-cluster at 2 (14), ICL=21<>40
cluster 7(N=86) has 5 sub-cluster at 5 (25), ICL=20<>40
cluster 6(N=182) has 4 sub-cluster at 4 (23), ICL=19<>40
cluster 5(N=362) has 8 sub-cluster at 8 (41), ICL=17<>40
cluster 2(N=308) has 2 sub-cluster at 2 (7), ICL=9.2<>40
cluster 4(N=75) has 3 sub-cluster at 4 (12), ICL=6.7<>40
cluster 2(N=308) has 2 sub-cluster at 2 (7), ICL=0<>40
Model Refinement takes 0.28 mins(max 1: 0.067)
Fit Model 7 of (6/10) K=13->17 N=9682
EM 15 takes 0.05 mins, 16 iterations
cluster 11(N=390) has 2 sub-cluster at 2 (6), ICL=42<>40
split 11 into 2 clusters
cluster 15(N=51) has 2 sub-cluster at 2 (100), ICL=40<>40
cluster 5(N=268) has 4 sub-cluster at 4 (69), ICL=38<>40
cluster 6(N=16) has 2 sub-cluster at 2 (100), ICL=34<>40
cluster 14(N=398) has 2 sub-cluster at 2 (20), ICL=22<>40
cluster 10(N=87) has 2 sub-cluster at 2 (12), ICL=20<>40
cluster 8(N=368) has 8 sub-cluster at 8 (19), ICL=17<>40
cluster 9(N=169) has 5 sub-cluster at 6 (41), ICL=16<>40
cluster 4(N=21) has 2 sub-cluster at 2 (7), ICL=14<>40
cluster 3(N=92) has 4 sub-cluster at 4 (21), ICL=10<>40
cluster 2(N=309) has 2 sub-cluster at 2 (8), ICL=9<>40
cluster 1(N=6224) has 3 sub-cluster at 3 (7), ICL=9<>40
cluster 7(N=74) has 2 sub-cluster at 2 (100), ICL=5.2<>40
cluster 1(N=6224) has 3 sub-cluster at 3 (7), ICL=0<>40
Model Refinement takes 0.28 mins(max 1: 0.067)
Fit Model 8 of (6/10) K=15->16 N=9682
EM 16 takes 0 mins, 3 iterations
cluster 6(N=15) has 2 sub-cluster at 2 (100), ICL=42<>40
split 6 into 2 clusters
cluster 15(N=398) has 2 sub-cluster at 2 (20), ICL=22<>40
cluster 10(N=87) has 5 sub-cluster at 5 (40), ICL=22<>40
cluster 12(N=182) has 6 sub-cluster at 7 (46), ICL=18<>40
cluster 4(N=20) has 2 sub-cluster at 2 (7), ICL=18<>40
cluster 5(N=295) has 6 sub-cluster at 7 (44), ICL=17<>40
cluster 8(N=368) has 6 sub-cluster at 6 (26), ICL=16<>40
cluster 9(N=169) has 5 sub-cluster at 7 (35), ICL=13<>40
cluster 3(N=93) has 3 sub-cluster at 3 (32), ICL=11<>40
cluster 11(N=272) has 7 sub-cluster at 8 (33), ICL=10<>40
cluster 2(N=309) has 2 sub-cluster at 2 (8), ICL=9<>40
cluster 7(N=74) has 2 sub-cluster at 2 (100), ICL=5.4<>40
cluster 2(N=309) has 2 sub-cluster at 2 (8), ICL=0<>40
Model Refinement takes 0.32 mins(max 1: 0.067)
Fit Model 9 of (6/10) K=16->17 N=9682
EM 16 takes 0.017 mins, 3 iterations
cluster 16(N=51) has 2 sub-cluster at 2 (100), ICL=40<>40
cluster 6(N=11) has 2 sub-cluster at 2 (100), ICL=26<>40
cluster 15(N=398) has 2 sub-cluster at 2 (20), ICL=22<>40
cluster 10(N=87) has 5 sub-cluster at 5 (40), ICL=22<>40
cluster 9(N=169) has 7 sub-cluster at 8 (13), ICL=22<>40
cluster 4(N=20) has 2 sub-cluster at 2 (7), ICL=18<>40
cluster 8(N=368) has 4 sub-cluster at 4 (19), ICL=18<>40
cluster 12(N=183) has 4 sub-cluster at 5 (18), ICL=16<>40
cluster 3(N=97) has 5 sub-cluster at 5 (85), ICL=15<>40
cluster 2(N=309) has 2 sub-cluster at 2 (10), ICL=10<>40
cluster 5(N=332) has 4 sub-cluster at 4 (27), ICL=9.5<>40
cluster 11(N=274) has 6 sub-cluster at 7 (29), ICL=9.4<>40
cluster 7(N=75) has 3 sub-cluster at 4 (12), ICL=6.7<>40
cluster 2(N=309) has 2 sub-cluster at 2 (10), ICL=0<>40
Model Refinement takes 0.32 mins(max 1: 0.067)
Fit Model 10 of (6/10) K=16->16 N=9682
EM 16 takes 0 mins, 3 iterations
Process completed at10
Major Iteration (Trans) (6/4) takes 1.8 mins
Fit Model 1 of 10 with 8 clusters
=> results in 8 clusters
Fit Model 2 of 10 with 21 clusters
=> results in 13 clusters
Fit Model 3 of 10 with 23 clusters
=> results in 19 clusters
Fit Model 4 of 10 with 26 clusters
=> results in 21 clusters
Fit Model 5 of 10 with 25 clusters
=> results in 21 clusters
Error: processing vignette 'immunoClust.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'immunoClust.tex' failed.
LaTeX errors:
! LaTeX Error: File `inputenx.sty' not found.
Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)
! Emergency stop.
<read *>
l.15 ^^M
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘immunoClust.Rnw’
SUMMARY: processing the following file failed:
‘immunoClust.Rnw’
Error: Vignette re-building failed.
Execution halted