Back to Multiple platform build/check report for BioC 3.21: simplified long |
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This page was generated on 2025-10-16 11:41 -0400 (Thu, 16 Oct 2025).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4833 |
merida1 | macOS 12.7.6 Monterey | x86_64 | 4.5.1 RC (2025-06-05 r88288) -- "Great Square Root" | 4614 |
kjohnson1 | macOS 13.7.5 Ventura | arm64 | 4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" | 4555 |
kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4586 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1040/2341 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
immunoClust 1.40.0 (landing page) Till Soerensen
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
merida1 | macOS 12.7.6 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
kjohnson1 | macOS 13.7.5 Ventura / arm64 | OK | OK | OK | OK | ![]() | ||||||||
kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
To the developers/maintainers of the immunoClust package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/immunoClust.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
Package: immunoClust |
Version: 1.40.0 |
Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunoClust |
StartedAt: 2025-10-14 01:47:41 -0000 (Tue, 14 Oct 2025) |
EndedAt: 2025-10-14 01:52:03 -0000 (Tue, 14 Oct 2025) |
EllapsedTime: 262.2 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunoClust ### ############################################################################## ############################################################################## * checking for file ‘immunoClust/DESCRIPTION’ ... OK * preparing ‘immunoClust’: * checking DESCRIPTION meta-information ... OK * cleaning src * running ‘cleanup’ * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘immunoClust.Rnw’ using Sweave Loading required package: flowCore filtered from above:318 filtered from below:0 cluster 1(N=151) has 2 sub-cluster at 2 (15), ICL=130<>26 split 1 into 2 clusters cluster 1(N=151) has 2 sub-cluster at 2 (15), ICL=0<>26 Model Refinement takes 0.033 mins(max 1: 0.033) Fit Model 1 of (6/10) K=1->2 N=302 EM 2 takes 0 mins, 8 iterations cluster 1(N=98) has 3 sub-cluster at 3 (6), ICL=107<>30 split 1 into 3 clusters cluster 2(N=205) has 3 sub-cluster at 4 (13), ICL=3.7<>30 cluster 1(N=98) has 3 sub-cluster at 3 (6), ICL=0<>30 Model Refinement takes 0.067 mins(max 1: 0.05) Fit Model 2 of (6/10) K=2->4 N=605 EM 4 takes 0 mins, 8 iterations cluster 4(N=414) has 2 sub-cluster at 2 (6), ICL=36<>34 split 4 into 2 clusters cluster 1(N=56) has 3 sub-cluster at 3 (26), ICL=27<>34 cluster 2(N=74) has 2 sub-cluster at 2 (69), ICL=21<>34 cluster 3(N=65) has 2 sub-cluster at 2 (12), ICL=13<>34 cluster 1(N=56) has 3 sub-cluster at 3 (26), ICL=0<>34 Model Refinement takes 0.067 mins(max 4: 0.033) Fit Model 3 of (6/10) K=4->5 N=1210 EM 5 takes 0 mins, 8 iterations cluster 1(N=103) has 2 sub-cluster at 2 (18), ICL=59<>37 split 1 into 2 clusters cluster 5(N=49) has 3 sub-cluster at 3 (18), ICL=36<>37 cluster 2(N=141) has 5 sub-cluster at 5 (23), ICL=20<>37 cluster 3(N=118) has 3 sub-cluster at 4 (45), ICL=11<>37 cluster 1(N=103) has 2 sub-cluster at 2 (18), ICL=0<>37 Model Refinement takes 0.12 mins(max 3: 0.033) Fit Model 4 of (6/10) K=5->6 N=2420 EM 6 takes 0 mins, 8 iterations cluster 4(N=234) has 2 sub-cluster at 2 (7), ICL=59<>41 split 4 into 2 clusters cluster 6(N=103) has 2 sub-cluster at 2 (14), ICL=52<>41 split 6 into 2 clusters cluster 3(N=281) has 2 sub-cluster at 2 (15), ICL=26<>41 cluster 1(N=79) has 2 sub-cluster at 2 (11), ICL=24<>41 cluster 2(N=150) has 6 sub-cluster at 6 (27), ICL=22<>41 cluster 1(N=79) has 2 sub-cluster at 2 (11), ICL=0<>41 Model Refinement takes 0.22 mins(max 5: 0.083) Fit Model 5 of (6/10) K=6->8 N=4841 EM 8 takes 0 mins, 7 iterations cluster 7(N=187) has 2 sub-cluster at 2 (6), ICL=62<>45 split 7 into 2 clusters cluster 3(N=552) has 2 sub-cluster at 2 (6), ICL=37<>45 cluster 2(N=264) has 3 sub-cluster at 3 (26), ICL=33<>45 cluster 5(N=31) has 2 sub-cluster at 2 (100), ICL=32<>45 cluster 1(N=196) has 2 sub-cluster at 2 (6), ICL=28<>45 cluster 4(N=464) has 2 sub-cluster at 2 (35), ICL=23<>45 cluster 8(N=69) has 3 sub-cluster at 3 (18), ICL=21<>45 cluster 1(N=196) has 2 sub-cluster at 2 (6), ICL=0<>45 Model Refinement takes 0.23 mins(max 6: 0.083) Fit Model 6 of (6/10) K=8->9 N=9682 EM 9 takes 0 mins, 8 iterations cluster 2(N=556) has 3 sub-cluster at 3 (11), ICL=65<>48 split 2 into 3 clusters cluster 9(N=153) has 4 sub-cluster at 4 (17), ICL=42<>48 cluster 3(N=1121) has 2 sub-cluster at 2 (5), ICL=38<>48 cluster 1(N=392) has 3 sub-cluster at 3 (34), ICL=38<>48 cluster 5(N=60) has 2 sub-cluster at 2 (9), ICL=30<>48 cluster 4(N=908) has 3 sub-cluster at 3 (12), ICL=29<>48 cluster 7(N=315) has 2 sub-cluster at 2 (9), ICL=7.3<>48 cluster 8(N=75) has 4 sub-cluster at 5 (52), ICL=0.99<>48 cluster 1(N=392) has 3 sub-cluster at 3 (34), ICL=0<>48 Model Refinement takes 0.32 mins(max 6: 0.1) Fit Model 7 of (6/10) K=9->11 N=9682 EM 11 takes 0 mins, 4 iterations cluster 6(N=898) has 2 sub-cluster at 2 (34), ICL=54<>48 split 6 into 2 clusters cluster 11(N=154) has 4 sub-cluster at 4 (16), ICL=43<>48 cluster 1(N=391) has 2 sub-cluster at 2 (8), ICL=37<>48 cluster 7(N=60) has 2 sub-cluster at 2 (9), ICL=30<>48 cluster 5(N=1121) has 2 sub-cluster at 2 (12), ICL=26<>48 cluster 10(N=74) has 5 sub-cluster at 6 (66), ICL=19<>48 cluster 4(N=86) has 2 sub-cluster at 2 (12), ICL=18<>48 cluster 2(N=362) has 6 sub-cluster at 7 (24), ICL=14<>48 cluster 3(N=181) has 3 sub-cluster at 4 (36), ICL=9.4<>48 cluster 9(N=308) has 2 sub-cluster at 2 (8), ICL=7.1<>48 cluster 1(N=391) has 2 sub-cluster at 2 (8), ICL=0<>48 Model Refinement takes 0.37 mins(max 8: 0.1) Fit Model 8 of (6/10) K=11->12 N=9682 EM 12 takes 0.017 mins, 3 iterations cluster 12(N=156) has 4 sub-cluster at 4 (16), ICL=43<>48 cluster 5(N=1121) has 2 sub-cluster at 2 (6), ICL=37<>48 cluster 1(N=391) has 2 sub-cluster at 2 (8), ICL=37<>48 cluster 8(N=61) has 2 sub-cluster at 2 (9), ICL=31<>48 cluster 4(N=86) has 2 sub-cluster at 2 (6), ICL=18<>48 cluster 11(N=74) has 3 sub-cluster at 4 (45), ICL=13<>48 cluster 2(N=362) has 2 sub-cluster at 2 (5), ICL=12<>48 cluster 10(N=308) has 2 sub-cluster at 2 (8), ICL=7.1<>48 cluster 3(N=174) has 6 sub-cluster at 7 (37), ICL=6<>48 cluster 1(N=391) has 2 sub-cluster at 2 (8), ICL=0<>48 Model Refinement takes 0.38 mins(max 9: 0.1) Fit Model 9 of (6/10) K=12->12 N=9682 EM 12 takes 0 mins, 3 iterations Process completed at9 Major Iteration (Trans) (6/4) takes 1.9 mins filtered from above:318 filtered from below:0 cluster 1(N=151) has 2 sub-cluster at 2 (12), ICL=146<>22 split 1 into 2 clusters cluster 1(N=151) has 2 sub-cluster at 2 (12), ICL=0<>22 Model Refinement takes 0.033 mins(max 1: 0.033) Fit Model 1 of (6/10) K=1->2 N=302 EM 2 takes 0 mins, 8 iterations cluster 2(N=70) has 3 sub-cluster at 3 (6), ICL=86<>25 split 2 into 3 clusters cluster 1(N=232) has 3 sub-cluster at 3 (6), ICL=57<>25 split 1 into 3 clusters cluster 1(N=232) has 3 sub-cluster at 3 (6), ICL=0<>25 Model Refinement takes 0.05 mins(max 1: 0.033) Fit Model 2 of (6/10) K=2->6 N=605 EM 6 takes 0 mins, 14 iterations cluster 2(N=8) has 2 sub-cluster at 2 (100), ICL=78<>28 split 2 into 2 clusters cluster 6(N=31) has 2 sub-cluster at 2 (6), ICL=17<>28 cluster 4(N=55) has 5 sub-cluster at 5 (13), ICL=16<>28 cluster 5(N=67) has 3 sub-cluster at 4 (15), ICL=13<>28 cluster 3(N=42) has 3 sub-cluster at 3 (11), ICL=13<>28 cluster 1(N=402) has 4 sub-cluster at 4 (91), ICL=10<>28 cluster 1(N=402) has 4 sub-cluster at 4 (91), ICL=0<>28 Model Refinement takes 0.083 mins(max 1: 0.017) Fit Model 3 of (6/10) K=6->7 N=1210 EM 6 takes 0 mins, 7 iterations cluster 1(N=827) has 2 sub-cluster at 2 (5), ICL=103<>31 split 1 into 2 clusters cluster 6(N=47) has 3 sub-cluster at 3 (17), ICL=19<>31 cluster 5(N=160) has 8 sub-cluster at 8 (33), ICL=19<>31 cluster 3(N=59) has 3 sub-cluster at 3 (23), ICL=18<>31 cluster 4(N=106) has 5 sub-cluster at 5 (22), ICL=14<>31 cluster 1(N=827) has 2 sub-cluster at 2 (5), ICL=0<>31 Model Refinement takes 0.12 mins(max 1: 0.033) Fit Model 4 of (6/10) K=6->7 N=2420 EM 7 takes 0 mins, 9 iterations cluster 2(N=102) has 2 sub-cluster at 2 (17), ICL=56<>34 split 2 into 2 clusters cluster 3(N=34) has 2 sub-cluster at 2 (5), ICL=39<>34 split 3 into 2 clusters cluster 7(N=100) has 2 sub-cluster at 2 (12), ICL=25<>34 cluster 4(N=152) has 7 sub-cluster at 7 (27), ICL=23<>34 cluster 6(N=271) has 2 sub-cluster at 2 (6), ICL=18<>34 cluster 5(N=252) has 5 sub-cluster at 5 (17), ICL=14<>34 cluster 2(N=102) has 2 sub-cluster at 2 (17), ICL=0<>34 Model Refinement takes 0.2 mins(max 1: 0.083) Fit Model 5 of (6/10) K=7->9 N=4841 EM 9 takes 0.017 mins, 7 iterations cluster 6(N=283) has 3 sub-cluster at 3 (14), ICL=36<>37 cluster 2(N=68) has 4 sub-cluster at 4 (39), ICL=31<>37 cluster 9(N=198) has 4 sub-cluster at 4 (22), ICL=27<>37 cluster 8(N=564) has 2 sub-cluster at 2 (5), ICL=24<>37 cluster 3(N=144) has 5 sub-cluster at 6 (34), ICL=18<>37 cluster 7(N=434) has 2 sub-cluster at 2 (11), ICL=16<>37 cluster 5(N=23) has 2 sub-cluster at 2 (5), ICL=14<>37 cluster 4(N=35) has 2 sub-cluster at 3 (17), ICL=14<>37 cluster 2(N=68) has 4 sub-cluster at 4 (39), ICL=0<>37 Model Refinement takes 0.25 mins(max 1: 0.083) Fit Model 6 of (6/10) K=9->9 N=9682 EM 9 takes 0.017 mins, 6 iterations cluster 6(N=557) has 3 sub-cluster at 3 (11), ICL=69<>40 split 6 into 3 clusters cluster 7(N=916) has 3 sub-cluster at 3 (10), ICL=56<>40 split 7 into 3 clusters cluster 8(N=1122) has 2 sub-cluster at 2 (8), ICL=54<>40 split 8 into 2 clusters cluster 2(N=153) has 4 sub-cluster at 4 (10), ICL=43<>40 split 2 into 4 clusters cluster 9(N=392) has 3 sub-cluster at 3 (34), ICL=41<>40 split 9 into 3 clusters cluster 3(N=314) has 2 sub-cluster at 2 (6), ICL=8.1<>40 cluster 4(N=75) has 2 sub-cluster at 3 (7), ICL=1.9<>40 cluster 2(N=153) has 4 sub-cluster at 4 (10), ICL=0<>40 Model Refinement takes 0.32 mins(max 1: 0.1) Fit Model 7 of (6/10) K=9->19 N=9682 EM 19 takes 0.017 mins, 4 iterations cluster 3(N=22) has 2 sub-cluster at 2 (9), ICL=20<>40 cluster 11(N=78) has 2 sub-cluster at 2 (17), ICL=20<>40 cluster 5(N=25) has 2 sub-cluster at 2 (23), ICL=18<>40 cluster 2(N=87) has 2 sub-cluster at 2 (30), ICL=16<>40 cluster 19(N=133) has 5 sub-cluster at 5 (38), ICL=14<>40 cluster 9(N=358) has 4 sub-cluster at 4 (14), ICL=13<>40 cluster 10(N=181) has 6 sub-cluster at 8 (26), ICL=11<>40 cluster 4(N=23) has 2 sub-cluster at 2 (5), ICL=10<>40 cluster 17(N=229) has 5 sub-cluster at 6 (30), ICL=9.8<>40 cluster 18(N=119) has 4 sub-cluster at 4 (19), ICL=9.1<>40 cluster 14(N=50) has 2 sub-cluster at 2 (100), ICL=6.9<>40 cluster 6(N=308) has 7 sub-cluster at 8 (44), ICL=5<>40 cluster 16(N=396) has 7 sub-cluster at 8 (43), ICL=1.8<>40 cluster 12(N=384) has 7 sub-cluster at 7 (28), ICL=0.36<>40 cluster 2(N=87) has 2 sub-cluster at 2 (30), ICL=0<>40 Model Refinement takes 0.43 mins(max 1: 0.1) Fit Model 8 of (6/10) K=19->19 N=9682 EM 19 takes 0 mins, 3 iterations Process completed at8 Major Iteration (Trans) (6/4) takes 1.6 mins Fit Model 1 of 10 with 8 clusters => results in 8 clusters Fit Model 2 of 10 with 21 clusters => results in 13 clusters Fit Model 3 of 10 with 23 clusters => results in 19 clusters Fit Model 4 of 10 with 26 clusters => results in 21 clusters Fit Model 5 of 10 with 25 clusters => results in 21 clusters Error: processing vignette 'immunoClust.Rnw' failed with diagnostics: Running 'texi2dvi' on 'immunoClust.tex' failed. LaTeX errors: ! LaTeX Error: File `inputenx.sty' not found. Type X to quit or <RETURN> to proceed, or enter new name. (Default extension: sty) ! Emergency stop. <read *> l.15 ^^M ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘immunoClust.Rnw’ SUMMARY: processing the following file failed: ‘immunoClust.Rnw’ Error: Vignette re-building failed. Execution halted