| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-12-25 11:58 -0500 (Thu, 25 Dec 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4883 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4671 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1077/2361 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| iPath 1.16.0 (landing page) Kenong Su
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the iPath package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/iPath.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: iPath |
| Version: 1.16.0 |
| Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 iPath |
| StartedAt: 2025-12-22 18:21:20 -0500 (Mon, 22 Dec 2025) |
| EndedAt: 2025-12-22 18:21:52 -0500 (Mon, 22 Dec 2025) |
| EllapsedTime: 32.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 iPath
###
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* checking for file ‘iPath/DESCRIPTION’ ... OK
* preparing ‘iPath’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘iPath.Rmd’ using rmarkdown
Quitting from iPath.Rmd:102-104 [onesurvival]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! Problem while converting geom to grob.
ℹ Error occurred in the 3rd layer.
Caused by error in `draw_group()`:
! Aesthetics can not vary along a ribbon: linewidth and linetype.
---
Backtrace:
▆
1. ├─base::withVisible(knit_print(x, ...))
2. ├─knitr::knit_print(x, ...)
3. └─knitr:::knit_print.default(x, ...)
4. └─knitr::normal_print(x)
5. ├─base::print(x)
6. └─survminer:::print.ggsurvplot(x)
7. └─survminer:::.build_ggsurvplot(...)
8. └─survminer:::.get_legend(x$plot)
9. ├─ggplot2::ggplot_gtable(ggplot_build(myggplot))
10. └─ggplot2 (local) `ggplot_gtable.ggplot2::ggplot_built`(ggplot_build(myggplot))
11. └─ggplot2:::by_layer(...)
12. ├─rlang::try_fetch(...)
13. │ ├─base::tryCatch(...)
14. │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
15. │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
16. │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
17. │ └─base::withCallingHandlers(...)
18. └─ggplot2 (local) f(l = layers[[i]], d = data[[i]])
19. └─l$draw_geom(d, layout)
20. └─ggplot2 (local) draw_geom(..., self = self)
21. └─self$geom$draw_layer(...)
22. └─ggplot2 (local) draw_layer(..., self = self)
23. └─base::lapply(...)
24. └─ggplot2 (local) FUN(X[[i]], ...)
25. ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params))
26. └─self$draw_panel(data, panel_params, coord, na.rm = TRUE)
27. └─ggplot2 (local) draw_panel(..., self = self)
28. └─base::lapply(...)
29. └─ggplot2 (local) FUN(X[[i]], ...)
30. └─self$draw_group(group, panel_params, coord, ...)
31. └─survminer (local) draw_group(..., self = self)
32. └─ggplot2:::GeomRibbon$draw_group(data, panel_scales, coord, na.rm = na.rm)
33. └─ggplot2 (local) draw_group(..., self = self)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'iPath.Rmd' failed with diagnostics:
Problem while converting geom to grob.
ℹ Error occurred in the 3rd layer.
Caused by error in `draw_group()`:
! Aesthetics can not vary along a ribbon: linewidth and linetype.
--- failed re-building ‘iPath.Rmd’
SUMMARY: processing the following file failed:
‘iPath.Rmd’
Error: Vignette re-building failed.
Execution halted