Back to Multiple platform build/check report for BioC 3.21: simplified long |
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This page was generated on 2025-09-25 11:38 -0400 (Thu, 25 Sep 2025).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4827 |
merida1 | macOS 12.7.5 Monterey | x86_64 | 4.5.1 RC (2025-06-05 r88288) -- "Great Square Root" | 4608 |
kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" | 4549 |
kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4581 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 915/2341 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
graper 1.24.2 (landing page) Britta Velten
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | ![]() | ||||||||
kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
To the developers/maintainers of the graper package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/graper.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: graper |
Version: 1.24.2 |
Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:graper.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings graper_1.24.2.tar.gz |
StartedAt: 2025-09-25 00:14:32 -0400 (Thu, 25 Sep 2025) |
EndedAt: 2025-09-25 00:16:02 -0400 (Thu, 25 Sep 2025) |
EllapsedTime: 90.1 seconds |
RetCode: 0 |
Status: OK |
CheckDir: graper.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:graper.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings graper_1.24.2.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.21-bioc/meat/graper.Rcheck’ * using R version 4.5.1 (2025-06-13) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0 GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0 * running under: Ubuntu 24.04.3 LTS * using session charset: UTF-8 * checking for file ‘graper/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘graper’ version ‘1.24.2’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘graper’ can be installed ... OK * used C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’ * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE checkRd: (-1) predict.graper.Rd:19-21: Lost braces in \itemize; meant \describe ? checkRd: (-1) predict.graper.Rd:22: Lost braces in \itemize; meant \describe ? checkRd: (-1) predict.graper.Rd:23-24: Lost braces in \itemize; meant \describe ? * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking compiled code ... NOTE Note: information on .o files is not available * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/home/biocbuild/bbs-3.21-bioc/meat/graper.Rcheck/00check.log’ for details.
graper.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL graper ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.21-bioc/R/site-library’ * installing *source* package ‘graper’ ... ** this is package ‘graper’ version ‘1.24.2’ ** using staged installation ** libs using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’ g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c fit_graper.cpp -o fit_graper.o g++ -std=gnu++17 -shared -L/home/biocbuild/bbs-3.21-bioc/R/lib -L/usr/local/lib -o graper.so RcppExports.o fit_graper.o -llapack -L/home/biocbuild/bbs-3.21-bioc/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/biocbuild/bbs-3.21-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.21-bioc/R/site-library/00LOCK-graper/00new/graper/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (graper)
graper.Rcheck/tests/testthat.Rout
R version 4.5.1 (2025-06-13) -- "Great Square Root" Copyright (C) 2025 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(graper) > > test_check("graper") iteration 1 Updating parameters of variational distributions... Calculating ELB.. ELB=-837.867 ELB improved by inf iteration 2 Updating parameters of variational distributions... Calculating ELB.. ELB=-554.444 ELB improved by 283.423 iteration 3 Updating parameters of variational distributions... Calculating ELB.. ELB=-492.929 ELB improved by 61.515 iteration 4 Updating parameters of variational distributions... Calculating ELB.. ELB=-454.712 ELB improved by 38.2177 iteration 5 Updating parameters of variational distributions... Calculating ELB.. ELB=-438.35 ELB improved by 16.3612 iteration 6 Updating parameters of variational distributions... Calculating ELB.. ELB=-431.962 ELB improved by 6.38805 iteration 7 Updating parameters of variational distributions... Calculating ELB.. ELB=-428.822 ELB improved by 3.13999 iteration 8 Updating parameters of variational distributions... Calculating ELB.. ELB=-426.933 ELB improved by 1.88903 iteration 9 Updating parameters of variational distributions... Calculating ELB.. ELB=-425.627 ELB improved by 1.30628 iteration 10 Updating parameters of variational distributions... Calculating ELB.. ELB=-424.614 ELB improved by 1.01297 iteration 11 Updating parameters of variational distributions... Calculating ELB.. ELB=-423.756 ELB improved by 0.858009 iteration 12 Updating parameters of variational distributions... Calculating ELB.. ELB=-422.985 ELB improved by 0.770527 iteration 13 Updating parameters of variational distributions... Calculating ELB.. ELB=-422.268 ELB improved by 0.716982 iteration 14 Updating parameters of variational distributions... Calculating ELB.. ELB=-421.587 ELB improved by 0.681785 iteration 15 Updating parameters of variational distributions... Calculating ELB.. ELB=-420.929 ELB improved by 0.657806 iteration 16 Updating parameters of variational distributions... Calculating ELB.. ELB=-420.287 ELB improved by 0.641727 iteration 17 Updating parameters of variational distributions... Calculating ELB.. ELB=-419.655 ELB improved by 0.631694 iteration 18 Updating parameters of variational distributions... Calculating ELB.. ELB=-419.029 ELB improved by 0.626065 iteration 19 Updating parameters of variational distributions... Calculating ELB.. ELB=-418.407 ELB improved by 0.622738 iteration 20 Updating parameters of variational distributions... Calculating ELB.. ELB=-417.788 ELB improved by 0.618872 iteration 21 Updating parameters of variational distributions... Calculating ELB.. ELB=-417.177 ELB improved by 0.610991 iteration 22 Updating parameters of variational distributions... Calculating ELB.. ELB=-416.581 ELB improved by 0.595514 iteration 23 Updating parameters of variational distributions... Calculating ELB.. ELB=-416.012 ELB improved by 0.569649 iteration 24 Updating parameters of variational distributions... Calculating ELB.. ELB=-415.479 ELB improved by 0.532386 iteration 25 Updating parameters of variational distributions... Calculating ELB.. ELB=-414.994 ELB improved by 0.485117 iteration 26 Updating parameters of variational distributions... Calculating ELB.. ELB=-414.563 ELB improved by 0.431454 iteration 27 Updating parameters of variational distributions... Calculating ELB.. ELB=-414.186 ELB improved by 0.3762 iteration 28 Updating parameters of variational distributions... Calculating ELB.. ELB=-413.863 ELB improved by 0.32395 iteration 29 Updating parameters of variational distributions... Calculating ELB.. ELB=-413.585 ELB improved by 0.277972 iteration 30 Updating parameters of variational distributions... Calculating ELB.. ELB=-413.345 ELB improved by 0.2398 iteration 31 Updating parameters of variational distributions... Calculating ELB.. ELB=-413.135 ELB improved by 0.20947 iteration 32 Updating parameters of variational distributions... Calculating ELB.. ELB=-412.949 ELB improved by 0.186072 iteration 33 Updating parameters of variational distributions... Calculating ELB.. ELB=-412.781 ELB improved by 0.168296 iteration 34 Updating parameters of variational distributions... Calculating ELB.. ELB=-412.626 ELB improved by 0.154809 iteration 35 Updating parameters of variational distributions... Calculating ELB.. ELB=-412.482 ELB improved by 0.144445 iteration 36 Updating parameters of variational distributions... Calculating ELB.. ELB=-412.345 ELB improved by 0.136271 iteration 37 Updating parameters of variational distributions... Calculating ELB.. ELB=-412.216 ELB improved by 0.129582 iteration 38 Updating parameters of variational distributions... Calculating ELB.. ELB=-412.092 ELB improved by 0.123871 iteration 39 Updating parameters of variational distributions... Calculating ELB.. ELB=-411.973 ELB improved by 0.118784 iteration 40 Updating parameters of variational distributions... Calculating ELB.. ELB=-411.859 ELB improved by 0.114089 iteration 41 Updating parameters of variational distributions... Calculating ELB.. ELB=-411.749 ELB improved by 0.109642 iteration 42 Updating parameters of variational distributions... Calculating ELB.. ELB=-411.644 ELB improved by 0.105368 iteration 43 Updating parameters of variational distributions... Calculating ELB.. ELB=-411.543 ELB improved by 0.101241 iteration 44 Updating parameters of variational distributions... Calculating ELB.. ELB=-411.446 ELB improved by 0.0972647 iteration 45 Updating parameters of variational distributions... Calculating ELB.. ELB=-411.352 ELB improved by 0.0934676 iteration 46 Updating parameters of variational distributions... Calculating ELB.. ELB=-411.262 ELB improved by 0.0898903 iteration 47 Updating parameters of variational distributions... Calculating ELB.. ELB=-411.176 ELB improved by 0.0865797 iteration 48 Updating parameters of variational distributions... Calculating ELB.. ELB=-411.092 ELB improved by 0.083584 iteration 49 Updating parameters of variational distributions... Calculating ELB.. ELB=-411.011 ELB improved by 0.080948 iteration 50 Updating parameters of variational distributions... Calculating ELB.. ELB=-410.932 ELB improved by 0.0787074 iteration 51 Updating parameters of variational distributions... Calculating ELB.. ELB=-410.855 ELB improved by 0.0768812 iteration 52 Updating parameters of variational distributions... Calculating ELB.. ELB=-410.78 ELB improved by 0.0754617 iteration 53 Updating parameters of variational distributions... Calculating ELB.. ELB=-410.706 ELB improved by 0.0744027 iteration 54 Updating parameters of variational distributions... Calculating ELB.. ELB=-410.632 ELB improved by 0.0736107 iteration 55 Updating parameters of variational distributions... Calculating ELB.. ELB=-410.559 ELB improved by 0.0729481 iteration 56 Updating parameters of variational distributions... Calculating ELB.. ELB=-410.487 ELB improved by 0.0722571 iteration 57 Updating parameters of variational distributions... Calculating ELB.. ELB=-410.415 ELB improved by 0.0714029 iteration 58 Updating parameters of variational distributions... Calculating ELB.. ELB=-410.345 ELB improved by 0.070319 iteration 59 Updating parameters of variational distributions... Calculating ELB.. ELB=-410.276 ELB improved by 0.0690286 iteration 60 Updating parameters of variational distributions... Calculating ELB.. ELB=-410.208 ELB improved by 0.0676272 iteration 61 Updating parameters of variational distributions... Calculating ELB.. ELB=-410.142 ELB improved by 0.0662424 iteration 62 Updating parameters of variational distributions... Calculating ELB.. ELB=-410.077 ELB improved by 0.0649958 iteration 63 Updating parameters of variational distributions... Calculating ELB.. ELB=-410.013 ELB improved by 0.0639857 iteration 64 Updating parameters of variational distributions... Calculating ELB.. ELB=-409.95 ELB improved by 0.0632877 iteration 65 Updating parameters of variational distributions... Calculating ELB.. ELB=-409.887 ELB improved by 0.0629651 iteration 66 Updating parameters of variational distributions... Calculating ELB.. ELB=-409.824 ELB improved by 0.0630821 iteration 67 Updating parameters of variational distributions... Calculating ELB.. ELB=-409.76 ELB improved by 0.0637168 iteration 68 Updating parameters of variational distributions... Calculating ELB.. ELB=-409.695 ELB improved by 0.0649759 iteration 69 Updating parameters of variational distributions... Calculating ELB.. ELB=-409.628 ELB improved by 0.0670169 iteration 70 Updating parameters of variational distributions... Calculating ELB.. ELB=-409.558 ELB improved by 0.0700811 iteration 71 Updating parameters of variational distributions... Calculating ELB.. ELB=-409.484 ELB improved by 0.0745525 iteration 72 Updating parameters of variational distributions... Calculating ELB.. ELB=-409.402 ELB improved by 0.0810653 iteration 73 Updating parameters of variational distributions... Calculating ELB.. ELB=-409.312 ELB improved by 0.09072 iteration 74 Updating parameters of variational distributions... Calculating ELB.. ELB=-409.206 ELB improved by 0.105541 iteration 75 Updating parameters of variational distributions... Calculating ELB.. ELB=-409.077 ELB improved by 0.129478 iteration 76 Updating parameters of variational distributions... Calculating ELB.. ELB=-408.906 ELB improved by 0.170488 iteration 77 Updating parameters of variational distributions... Calculating ELB.. ELB=-408.663 ELB improved by 0.243467 iteration 78 Updating parameters of variational distributions... Calculating ELB.. ELB=-408.296 ELB improved by 0.366462 iteration 79 Updating parameters of variational distributions... Calculating ELB.. ELB=-407.767 ELB improved by 0.529512 iteration 80 Updating parameters of variational distributions... Calculating ELB.. ELB=-407.091 ELB improved by 0.67581 iteration 81 Updating parameters of variational distributions... Calculating ELB.. ELB=-406.317 ELB improved by 0.774398 iteration 82 Updating parameters of variational distributions... Calculating ELB.. ELB=-405.495 ELB improved by 0.82161 iteration 83 Updating parameters of variational distributions... Calculating ELB.. ELB=-404.696 ELB improved by 0.799323 iteration 84 Updating parameters of variational distributions... Calculating ELB.. ELB=-403.987 ELB improved by 0.708423 iteration 85 Updating parameters of variational distributions... Calculating ELB.. ELB=-403.409 ELB improved by 0.577837 iteration 86 Updating parameters of variational distributions... Calculating ELB.. ELB=-402.968 ELB improved by 0.44139 iteration 87 Updating parameters of variational distributions... Calculating ELB.. ELB=-402.646 ELB improved by 0.322476 iteration 88 Updating parameters of variational distributions... Calculating ELB.. ELB=-402.415 ELB improved by 0.230815 iteration 89 Updating parameters of variational distributions... Calculating ELB.. ELB=-402.249 ELB improved by 0.166049 iteration 90 Updating parameters of variational distributions... Calculating ELB.. ELB=-402.125 ELB improved by 0.123171 iteration 91 Updating parameters of variational distributions... Calculating ELB.. ELB=-402.029 ELB improved by 0.0963137 iteration 92 Updating parameters of variational distributions... Calculating ELB.. ELB=-401.949 ELB improved by 0.080235 iteration 93 Updating parameters of variational distributions... Calculating ELB.. ELB=-401.878 ELB improved by 0.0704589 iteration 94 Updating parameters of variational distributions... Calculating ELB.. ELB=-401.815 ELB improved by 0.0631521 iteration 95 Updating parameters of variational distributions... Calculating ELB.. ELB=-401.76 ELB improved by 0.0555061 iteration 96 Updating parameters of variational distributions... Calculating ELB.. ELB=-401.713 ELB improved by 0.0464749 iteration 97 Updating parameters of variational distributions... Calculating ELB.. ELB=-401.677 ELB improved by 0.0367991 iteration 98 Updating parameters of variational distributions... Calculating ELB.. ELB=-401.649 ELB improved by 0.0279107 iteration 99 Updating parameters of variational distributions... Calculating ELB.. ELB=-401.628 ELB improved by 0.0207752 iteration 100 Updating parameters of variational distributions... Calculating ELB.. ELB=-401.612 ELB improved by 0.0155755 iteration 101 Updating parameters of variational distributions... Calculating ELB.. ELB=-401.6 ELB improved by 0.0120062 iteration 102 Updating parameters of variational distributions... Calculating ELB.. ELB=-401.591 ELB improved by 0.00962544 ELB converged iteration 1 Updating parameters of variational distributions... Calculating ELB.. ELB=-867.016 ELB improved by inf iteration 2 Updating parameters of variational distributions... Calculating ELB.. ELB=-602.129 ELB improved by 264.887 iteration 3 Updating parameters of variational distributions... Calculating ELB.. ELB=-542.486 ELB improved by 59.6433 iteration 4 Updating parameters of variational distributions... Calculating ELB.. ELB=-494.245 ELB improved by 48.2413 iteration 5 Updating parameters of variational distributions... Calculating ELB.. ELB=-468.945 ELB improved by 25.2997 iteration 6 Updating parameters of variational distributions... Calculating ELB.. ELB=-458.632 ELB improved by 10.3131 iteration 7 Updating parameters of variational distributions... Calculating ELB.. ELB=-452.619 ELB improved by 6.01251 iteration 8 Updating parameters of variational distributions... Calculating ELB.. ELB=-447.537 ELB improved by 5.0818 iteration 9 Updating parameters of variational distributions... Calculating ELB.. ELB=-442.434 ELB improved by 5.10371 iteration 10 Updating parameters of variational distributions... Calculating ELB.. ELB=-437.175 ELB improved by 5.2588 iteration 11 Updating parameters of variational distributions... Calculating ELB.. ELB=-432.125 ELB improved by 5.04996 iteration 12 Updating parameters of variational distributions... Calculating ELB.. ELB=-427.856 ELB improved by 4.26854 iteration 13 Updating parameters of variational distributions... Calculating ELB.. ELB=-424.641 ELB improved by 3.21571 iteration 14 Updating parameters of variational distributions... Calculating ELB.. ELB=-422.296 ELB improved by 2.34462 iteration 15 Updating parameters of variational distributions... Calculating ELB.. ELB=-420.563 ELB improved by 1.73311 iteration 16 Updating parameters of variational distributions... Calculating ELB.. ELB=-419.291 ELB improved by 1.27148 iteration 17 Updating parameters of variational distributions... Calculating ELB.. ELB=-418.358 ELB improved by 0.933216 iteration 18 Updating parameters of variational distributions... Calculating ELB.. ELB=-417.658 ELB improved by 0.700464 iteration 19 Updating parameters of variational distributions... Calculating ELB.. ELB=-417.113 ELB improved by 0.544602 iteration 20 Updating parameters of variational distributions... Calculating ELB.. ELB=-416.674 ELB improved by 0.439163 iteration 21 Updating parameters of variational distributions... Calculating ELB.. ELB=-416.304 ELB improved by 0.369795 iteration 22 Updating parameters of variational distributions... Calculating ELB.. ELB=-415.978 ELB improved by 0.326166 iteration 23 Updating parameters of variational distributions... Calculating ELB.. ELB=-415.679 ELB improved by 0.298986 iteration 24 Updating parameters of variational distributions... Calculating ELB.. ELB=-415.398 ELB improved by 0.281544 iteration 25 Updating parameters of variational distributions... Calculating ELB.. ELB=-415.128 ELB improved by 0.269664 iteration 26 Updating parameters of variational distributions... Calculating ELB.. ELB=-414.867 ELB improved by 0.260797 iteration 27 Updating parameters of variational distributions... Calculating ELB.. ELB=-414.614 ELB improved by 0.253307 iteration 28 Updating parameters of variational distributions... Calculating ELB.. ELB=-414.368 ELB improved by 0.246136 iteration 29 Updating parameters of variational distributions... Calculating ELB.. ELB=-414.129 ELB improved by 0.238691 iteration 30 Updating parameters of variational distributions... Calculating ELB.. ELB=-413.898 ELB improved by 0.230838 iteration 31 Updating parameters of variational distributions... Calculating ELB.. ELB=-413.675 ELB improved by 0.222931 iteration 32 Updating parameters of variational distributions... Calculating ELB.. ELB=-413.459 ELB improved by 0.215883 iteration 33 Updating parameters of variational distributions... Calculating ELB.. ELB=-413.248 ELB improved by 0.211366 iteration 34 Updating parameters of variational distributions... Calculating ELB.. ELB=-413.036 ELB improved by 0.212322 iteration 35 Updating parameters of variational distributions... Calculating ELB.. ELB=-412.811 ELB improved by 0.224188 iteration 36 Updating parameters of variational distributions... Calculating ELB.. ELB=-412.554 ELB improved by 0.256971 iteration 37 Updating parameters of variational distributions... Calculating ELB.. ELB=-412.23 ELB improved by 0.324316 iteration 38 Updating parameters of variational distributions... Calculating ELB.. ELB=-411.81 ELB improved by 0.420355 iteration 39 Updating parameters of variational distributions... Calculating ELB.. ELB=-411.329 ELB improved by 0.481093 iteration 40 Updating parameters of variational distributions... Calculating ELB.. ELB=-410.867 ELB improved by 0.461398 iteration 41 Updating parameters of variational distributions... Calculating ELB.. ELB=-410.459 ELB improved by 0.407886 iteration 42 Updating parameters of variational distributions... Calculating ELB.. ELB=-410.099 ELB improved by 0.360324 iteration 43 Updating parameters of variational distributions... Calculating ELB.. ELB=-409.774 ELB improved by 0.325096 iteration 44 Updating parameters of variational distributions... Calculating ELB.. ELB=-409.474 ELB improved by 0.300059 iteration 45 Updating parameters of variational distributions... Calculating ELB.. ELB=-409.191 ELB improved by 0.283018 iteration 46 Updating parameters of variational distributions... Calculating ELB.. ELB=-408.918 ELB improved by 0.272449 iteration 47 Updating parameters of variational distributions... Calculating ELB.. ELB=-408.651 ELB improved by 0.267222 iteration 48 Updating parameters of variational distributions... Calculating ELB.. ELB=-408.385 ELB improved by 0.266397 iteration 49 Updating parameters of variational distributions... Calculating ELB.. ELB=-408.116 ELB improved by 0.269089 iteration 50 Updating parameters of variational distributions... Calculating ELB.. ELB=-407.841 ELB improved by 0.274383 iteration 51 Updating parameters of variational distributions... Calculating ELB.. ELB=-407.56 ELB improved by 0.281253 iteration 52 Updating parameters of variational distributions... Calculating ELB.. ELB=-407.272 ELB improved by 0.288504 iteration 53 Updating parameters of variational distributions... Calculating ELB.. ELB=-406.977 ELB improved by 0.294772 iteration 54 Updating parameters of variational distributions... Calculating ELB.. ELB=-406.678 ELB improved by 0.298666 iteration 55 Updating parameters of variational distributions... Calculating ELB.. ELB=-406.379 ELB improved by 0.299169 iteration 56 Updating parameters of variational distributions... Calculating ELB.. ELB=-406.083 ELB improved by 0.296258 iteration 57 Updating parameters of variational distributions... Calculating ELB.. ELB=-405.791 ELB improved by 0.291586 iteration 58 Updating parameters of variational distributions... Calculating ELB.. ELB=-405.502 ELB improved by 0.28891 iteration 59 Updating parameters of variational distributions... Calculating ELB.. ELB=-405.208 ELB improved by 0.293792 iteration 60 Updating parameters of variational distributions... Calculating ELB.. ELB=-404.898 ELB improved by 0.310795 iteration 61 Updating parameters of variational distributions... Calculating ELB.. ELB=-404.563 ELB improved by 0.33489 iteration 62 Updating parameters of variational distributions... Calculating ELB.. ELB=-404.218 ELB improved by 0.345065 iteration 63 Updating parameters of variational distributions... Calculating ELB.. ELB=-403.892 ELB improved by 0.325519 iteration 64 Updating parameters of variational distributions... Calculating ELB.. ELB=-403.611 ELB improved by 0.28164 iteration 65 Updating parameters of variational distributions... Calculating ELB.. ELB=-403.391 ELB improved by 0.219079 iteration 66 Updating parameters of variational distributions... Calculating ELB.. ELB=-403.239 ELB improved by 0.152023 iteration 67 Updating parameters of variational distributions... Calculating ELB.. ELB=-403.138 ELB improved by 0.101844 iteration 68 Updating parameters of variational distributions... Calculating ELB.. ELB=-403.063 ELB improved by 0.0744232 iteration 69 Updating parameters of variational distributions... Calculating ELB.. ELB=-402.998 ELB improved by 0.0650221 iteration 70 Updating parameters of variational distributions... Calculating ELB.. ELB=-402.928 ELB improved by 0.0700139 iteration 71 Updating parameters of variational distributions... Calculating ELB.. ELB=-402.839 ELB improved by 0.0894693 iteration 72 Updating parameters of variational distributions... Calculating ELB.. ELB=-402.718 ELB improved by 0.120878 iteration 73 Updating parameters of variational distributions... Calculating ELB.. ELB=-402.575 ELB improved by 0.142368 iteration 74 Updating parameters of variational distributions... Calculating ELB.. ELB=-402.454 ELB improved by 0.121842 iteration 75 Updating parameters of variational distributions... Calculating ELB.. ELB=-402.377 ELB improved by 0.0766267 iteration 76 Updating parameters of variational distributions... Calculating ELB.. ELB=-402.331 ELB improved by 0.0460663 iteration 77 Updating parameters of variational distributions... Calculating ELB.. ELB=-402.297 ELB improved by 0.0335977 iteration 78 Updating parameters of variational distributions... Calculating ELB.. ELB=-402.268 ELB improved by 0.0293469 iteration 79 Updating parameters of variational distributions... Calculating ELB.. ELB=-402.24 ELB improved by 0.0280172 iteration 80 Updating parameters of variational distributions... Calculating ELB.. ELB=-402.212 ELB improved by 0.0279139 iteration 81 Updating parameters of variational distributions... Calculating ELB.. ELB=-402.183 ELB improved by 0.0290724 iteration 82 Updating parameters of variational distributions... Calculating ELB.. ELB=-402.15 ELB improved by 0.0330307 iteration 83 Updating parameters of variational distributions... Calculating ELB.. ELB=-402.106 ELB improved by 0.0437068 iteration 84 Updating parameters of variational distributions... Calculating ELB.. ELB=-402.036 ELB improved by 0.0698596 iteration 85 Updating parameters of variational distributions... Calculating ELB.. ELB=-401.908 ELB improved by 0.128597 iteration 86 Updating parameters of variational distributions... Calculating ELB.. ELB=-401.673 ELB improved by 0.234361 iteration 87 Updating parameters of variational distributions... Calculating ELB.. ELB=-401.333 ELB improved by 0.340316 iteration 88 Updating parameters of variational distributions... Calculating ELB.. ELB=-400.978 ELB improved by 0.355087 iteration 89 Updating parameters of variational distributions... Calculating ELB.. ELB=-400.67 ELB improved by 0.307842 iteration 90 Updating parameters of variational distributions... Calculating ELB.. ELB=-400.426 ELB improved by 0.244372 iteration 91 Updating parameters of variational distributions... Calculating ELB.. ELB=-400.267 ELB improved by 0.158982 iteration 92 Updating parameters of variational distributions... Calculating ELB.. ELB=-400.184 ELB improved by 0.083076 iteration 93 Updating parameters of variational distributions... Calculating ELB.. ELB=-400.145 ELB improved by 0.0387912 iteration 94 Updating parameters of variational distributions... Calculating ELB.. ELB=-400.127 ELB improved by 0.0180857 iteration 95 Updating parameters of variational distributions... Calculating ELB.. ELB=-400.118 ELB improved by 0.00916908 ELB converged iteration 1 Updating parameters of variational distributions... Calculating ELB.. ELB=-855.508 ELB improved by inf iteration 2 Updating parameters of variational distributions... Calculating ELB.. ELB=-588.921 ELB improved by 266.587 iteration 3 Updating parameters of variational distributions... Calculating ELB.. ELB=-524.03 ELB improved by 64.8905 iteration 4 Updating parameters of variational distributions... Calculating ELB.. ELB=-478.614 ELB improved by 45.4161 iteration 5 Updating parameters of variational distributions... Calculating ELB.. ELB=-457.394 ELB improved by 21.22 iteration 6 Updating parameters of variational distributions... Calculating ELB.. ELB=-447.552 ELB improved by 9.84222 iteration 7 Updating parameters of variational distributions... Calculating ELB.. ELB=-441.666 ELB improved by 5.88587 iteration 8 Updating parameters of variational distributions... Calculating ELB.. ELB=-437.286 ELB improved by 4.3801 iteration 9 Updating parameters of variational distributions... Calculating ELB.. ELB=-433.475 ELB improved by 3.81044 iteration 10 Updating parameters of variational distributions... Calculating ELB.. ELB=-429.924 ELB improved by 3.55176 iteration 11 Updating parameters of variational distributions... Calculating ELB.. ELB=-426.558 ELB improved by 3.36607 iteration 12 Updating parameters of variational distributions... Calculating ELB.. ELB=-423.378 ELB improved by 3.17959 iteration 13 Updating parameters of variational distributions... Calculating ELB.. ELB=-420.414 ELB improved by 2.96371 iteration 14 Updating parameters of variational distributions... Calculating ELB.. ELB=-417.741 ELB improved by 2.67316 iteration 15 Updating parameters of variational distributions... Calculating ELB.. ELB=-415.483 ELB improved by 2.25811 iteration 16 Updating parameters of variational distributions... Calculating ELB.. ELB=-413.736 ELB improved by 1.74681 iteration 17 Updating parameters of variational distributions... Calculating ELB.. ELB=-412.487 ELB improved by 1.24895 iteration 18 Updating parameters of variational distributions... Calculating ELB.. ELB=-411.631 ELB improved by 0.856728 iteration 19 Updating parameters of variational distributions... Calculating ELB.. ELB=-411.041 ELB improved by 0.589912 iteration 20 Updating parameters of variational distributions... Calculating ELB.. ELB=-410.619 ELB improved by 0.421649 iteration 21 Updating parameters of variational distributions... Calculating ELB.. ELB=-410.302 ELB improved by 0.317294 iteration 22 Updating parameters of variational distributions... Calculating ELB.. ELB=-410.051 ELB improved by 0.251041 iteration 23 Updating parameters of variational distributions... Calculating ELB.. ELB=-409.844 ELB improved by 0.207054 iteration 24 Updating parameters of variational distributions... Calculating ELB.. ELB=-409.667 ELB improved by 0.17632 iteration 25 Updating parameters of variational distributions... Calculating ELB.. ELB=-409.513 ELB improved by 0.153789 iteration 26 Updating parameters of variational distributions... Calculating ELB.. ELB=-409.377 ELB improved by 0.136583 iteration 27 Updating parameters of variational distributions... Calculating ELB.. ELB=-409.254 ELB improved by 0.123004 iteration 28 Updating parameters of variational distributions... Calculating ELB.. ELB=-409.142 ELB improved by 0.112011 iteration 29 Updating parameters of variational distributions... Calculating ELB.. ELB=-409.039 ELB improved by 0.102945 iteration 30 Updating parameters of variational distributions... Calculating ELB.. ELB=-408.944 ELB improved by 0.0953679 iteration 31 Updating parameters of variational distributions... Calculating ELB.. ELB=-408.855 ELB improved by 0.0889805 iteration 32 Updating parameters of variational distributions... Calculating ELB.. ELB=-408.771 ELB improved by 0.0835679 iteration 33 Updating parameters of variational distributions... Calculating ELB.. ELB=-408.692 ELB improved by 0.0789654 iteration 34 Updating parameters of variational distributions... Calculating ELB.. ELB=-408.617 ELB improved by 0.0750364 iteration 35 Updating parameters of variational distributions... Calculating ELB.. ELB=-408.545 ELB improved by 0.0716544 iteration 36 Updating parameters of variational distributions... Calculating ELB.. ELB=-408.477 ELB improved by 0.0686897 iteration 37 Updating parameters of variational distributions... Calculating ELB.. ELB=-408.411 ELB improved by 0.0660002 iteration 38 Updating parameters of variational distributions... Calculating ELB.. ELB=-408.347 ELB improved by 0.0634283 iteration 39 Updating parameters of variational distributions... Calculating ELB.. ELB=-408.286 ELB improved by 0.0608101 iteration 40 Updating parameters of variational distributions... Calculating ELB.. ELB=-408.228 ELB improved by 0.0579972 iteration 41 Updating parameters of variational distributions... Calculating ELB.. ELB=-408.174 ELB improved by 0.054889 iteration 42 Updating parameters of variational distributions... Calculating ELB.. ELB=-408.122 ELB improved by 0.0514636 iteration 43 Updating parameters of variational distributions... Calculating ELB.. ELB=-408.074 ELB improved by 0.0477883 iteration 44 Updating parameters of variational distributions... Calculating ELB.. ELB=-408.03 ELB improved by 0.0440004 iteration 45 Updating parameters of variational distributions... Calculating ELB.. ELB=-407.99 ELB improved by 0.0402646 iteration 46 Updating parameters of variational distributions... Calculating ELB.. ELB=-407.953 ELB improved by 0.0367269 iteration 47 Updating parameters of variational distributions... Calculating ELB.. ELB=-407.92 ELB improved by 0.0334846 iteration 48 Updating parameters of variational distributions... Calculating ELB.. ELB=-407.889 ELB improved by 0.0305799 iteration 49 Updating parameters of variational distributions... Calculating ELB.. ELB=-407.861 ELB improved by 0.028011 iteration 50 Updating parameters of variational distributions... Calculating ELB.. ELB=-407.835 ELB improved by 0.0257495 iteration 51 Updating parameters of variational distributions... Calculating ELB.. ELB=-407.812 ELB improved by 0.0237554 iteration 52 Updating parameters of variational distributions... Calculating ELB.. ELB=-407.79 ELB improved by 0.0219882 iteration 53 Updating parameters of variational distributions... Calculating ELB.. ELB=-407.769 ELB improved by 0.0204116 iteration 54 Updating parameters of variational distributions... Calculating ELB.. ELB=-407.75 ELB improved by 0.0189954 iteration 55 Updating parameters of variational distributions... Calculating ELB.. ELB=-407.733 ELB improved by 0.0177155 iteration 56 Updating parameters of variational distributions... Calculating ELB.. ELB=-407.716 ELB improved by 0.0165526 iteration 57 Updating parameters of variational distributions... Calculating ELB.. ELB=-407.701 ELB improved by 0.0154915 iteration 58 Updating parameters of variational distributions... Calculating ELB.. ELB=-407.686 ELB improved by 0.0145199 iteration 59 Updating parameters of variational distributions... Calculating ELB.. ELB=-407.672 ELB improved by 0.0136278 iteration 60 Updating parameters of variational distributions... Calculating ELB.. ELB=-407.66 ELB improved by 0.0128067 iteration 61 Updating parameters of variational distributions... Calculating ELB.. ELB=-407.648 ELB improved by 0.0120497 iteration 62 Updating parameters of variational distributions... Calculating ELB.. ELB=-407.636 ELB improved by 0.0113505 iteration 63 Updating parameters of variational distributions... Calculating ELB.. ELB=-407.625 ELB improved by 0.0107038 iteration 64 Updating parameters of variational distributions... Calculating ELB.. ELB=-407.615 ELB improved by 0.0101049 iteration 65 Updating parameters of variational distributions... Calculating ELB.. ELB=-407.606 ELB improved by 0.0095497 ELB converged iteration 1 Updating parameters of variational distributions... Calculating ELB.. ELB=-836.185 ELB improved by inf iteration 2 Updating parameters of variational distributions... Calculating ELB.. ELB=-558.883 ELB improved by 277.302 iteration 3 Updating parameters of variational distributions... Calculating ELB.. ELB=-500.168 ELB improved by 58.7149 iteration 4 Updating parameters of variational distributions... Calculating ELB.. ELB=-466.773 ELB improved by 33.3946 iteration 5 Updating parameters of variational distributions... Calculating ELB.. ELB=-452.25 ELB improved by 14.5229 iteration 6 Updating parameters of variational distributions... Calculating ELB.. ELB=-445.031 ELB improved by 7.2189 iteration 7 Updating parameters of variational distributions... Calculating ELB.. ELB=-440.499 ELB improved by 4.53274 iteration 8 Updating parameters of variational distributions... Calculating ELB.. ELB=-436.942 ELB improved by 3.55613 iteration 9 Updating parameters of variational distributions... Calculating ELB.. ELB=-433.72 ELB improved by 3.22282 iteration 10 Updating parameters of variational distributions... Calculating ELB.. ELB=-430.69 ELB improved by 3.03013 iteration 11 Updating parameters of variational distributions... Calculating ELB.. ELB=-427.958 ELB improved by 2.73182 iteration 12 Updating parameters of variational distributions... Calculating ELB.. ELB=-425.706 ELB improved by 2.25132 iteration 13 Updating parameters of variational distributions... Calculating ELB.. ELB=-424.034 ELB improved by 1.67241 iteration 14 Updating parameters of variational distributions... Calculating ELB.. ELB=-422.887 ELB improved by 1.14651 iteration 15 Updating parameters of variational distributions... Calculating ELB.. ELB=-422.122 ELB improved by 0.765143 iteration 16 Updating parameters of variational distributions... Calculating ELB.. ELB=-421.594 ELB improved by 0.528706 iteration 17 Updating parameters of variational distributions... Calculating ELB.. ELB=-421.199 ELB improved by 0.39511 iteration 18 Updating parameters of variational distributions... Calculating ELB.. ELB=-420.875 ELB improved by 0.323219 iteration 19 Updating parameters of variational distributions... Calculating ELB.. ELB=-420.589 ELB improved by 0.285974 iteration 20 Updating parameters of variational distributions... Calculating ELB.. ELB=-420.321 ELB improved by 0.268294 iteration 21 Updating parameters of variational distributions... Calculating ELB.. ELB=-420.059 ELB improved by 0.262389 iteration 22 Updating parameters of variational distributions... Calculating ELB.. ELB=-419.794 ELB improved by 0.264372 iteration 23 Updating parameters of variational distributions... Calculating ELB.. ELB=-419.522 ELB improved by 0.272364 iteration 24 Updating parameters of variational distributions... Calculating ELB.. ELB=-419.236 ELB improved by 0.285531 iteration 25 Updating parameters of variational distributions... Calculating ELB.. ELB=-418.933 ELB improved by 0.303621 iteration 26 Updating parameters of variational distributions... Calculating ELB.. ELB=-418.606 ELB improved by 0.32675 iteration 27 Updating parameters of variational distributions... Calculating ELB.. ELB=-418.251 ELB improved by 0.355268 iteration 28 Updating parameters of variational distributions... Calculating ELB.. ELB=-417.861 ELB improved by 0.389601 iteration 29 Updating parameters of variational distributions... Calculating ELB.. ELB=-417.431 ELB improved by 0.429865 iteration 30 Updating parameters of variational distributions... Calculating ELB.. ELB=-416.956 ELB improved by 0.475076 iteration 31 Updating parameters of variational distributions... Calculating ELB.. ELB=-416.434 ELB improved by 0.522197 iteration 32 Updating parameters of variational distributions... Calculating ELB.. ELB=-415.868 ELB improved by 0.566357 iteration 33 Updating parameters of variational distributions... Calculating ELB.. ELB=-415.264 ELB improved by 0.603233 iteration 34 Updating parameters of variational distributions... Calculating ELB.. ELB=-414.633 ELB improved by 0.631122 iteration 35 Updating parameters of variational distributions... Calculating ELB.. ELB=-413.983 ELB improved by 0.649993 iteration 36 Updating parameters of variational distributions... Calculating ELB.. ELB=-413.324 ELB improved by 0.659687 iteration 37 Updating parameters of variational distributions... Calculating ELB.. ELB=-412.664 ELB improved by 0.659733 iteration 38 Updating parameters of variational distributions... Calculating ELB.. ELB=-412.014 ELB improved by 0.65027 iteration 39 Updating parameters of variational distributions... Calculating ELB.. ELB=-411.381 ELB improved by 0.63287 iteration 40 Updating parameters of variational distributions... Calculating ELB.. ELB=-410.771 ELB improved by 0.610146 iteration 41 Updating parameters of variational distributions... Calculating ELB.. ELB=-410.188 ELB improved by 0.582604 iteration 42 Updating parameters of variational distributions... Calculating ELB.. ELB=-409.645 ELB improved by 0.542728 iteration 43 Updating parameters of variational distributions... Calculating ELB.. ELB=-409.169 ELB improved by 0.476494 iteration 44 Updating parameters of variational distributions... Calculating ELB.. ELB=-408.785 ELB improved by 0.384132 iteration 45 Updating parameters of variational distributions... Calculating ELB.. ELB=-408.496 ELB improved by 0.288826 iteration 46 Updating parameters of variational distributions... Calculating ELB.. ELB=-408.285 ELB improved by 0.211127 iteration 47 Updating parameters of variational distributions... Calculating ELB.. ELB=-408.13 ELB improved by 0.155 iteration 48 Updating parameters of variational distributions... Calculating ELB.. ELB=-408.014 ELB improved by 0.115919 iteration 49 Updating parameters of variational distributions... Calculating ELB.. ELB=-407.925 ELB improved by 0.0885667 iteration 50 Updating parameters of variational distributions... Calculating ELB.. ELB=-407.856 ELB improved by 0.0690446 iteration 51 Updating parameters of variational distributions... Calculating ELB.. ELB=-407.801 ELB improved by 0.054812 iteration 52 Updating parameters of variational distributions... Calculating ELB.. ELB=-407.757 ELB improved by 0.0442376 iteration 53 Updating parameters of variational distributions... Calculating ELB.. ELB=-407.721 ELB improved by 0.0362534 iteration 54 Updating parameters of variational distributions... Calculating ELB.. ELB=-407.691 ELB improved by 0.0301402 iteration 55 Updating parameters of variational distributions... Calculating ELB.. ELB=-407.665 ELB improved by 0.0254007 iteration 56 Updating parameters of variational distributions... Calculating ELB.. ELB=-407.644 ELB improved by 0.0216834 iteration 57 Updating parameters of variational distributions... Calculating ELB.. ELB=-407.625 ELB improved by 0.018735 iteration 58 Updating parameters of variational distributions... Calculating ELB.. ELB=-407.608 ELB improved by 0.0163707 iteration 59 Updating parameters of variational distributions... Calculating ELB.. ELB=-407.594 ELB improved by 0.0144537 iteration 60 Updating parameters of variational distributions... Calculating ELB.. ELB=-407.581 ELB improved by 0.0128826 iteration 61 Updating parameters of variational distributions... Calculating ELB.. ELB=-407.57 ELB improved by 0.0115808 iteration 62 Updating parameters of variational distributions... Calculating ELB.. ELB=-407.559 ELB improved by 0.0104906 iteration 63 Updating parameters of variational distributions... Calculating ELB.. ELB=-407.55 ELB improved by 0.00956825 ELB converged [ FAIL 0 | WARN 0 | SKIP 0 | PASS 24 ] > > proc.time() user system elapsed 2.135 0.196 2.319
graper.Rcheck/graper-Ex.timings
name | user | system | elapsed | |
coef.graper | 0.055 | 0.011 | 0.067 | |
getPIPs | 0.046 | 0.018 | 0.065 | |
graper | 0.086 | 0.016 | 0.102 | |
makeExampleData | 0.009 | 0.002 | 0.011 | |
makeExampleDataWithUnequalGroups | 0.012 | 0.001 | 0.014 | |
plotELBO | 0.403 | 0.026 | 0.436 | |
plotGroupPenalties | 1.286 | 0.083 | 1.369 | |
plotPosterior | 0.699 | 0.166 | 0.865 | |
predict.graper | 2.074 | 0.072 | 2.147 | |
print.graper | 0.049 | 0.015 | 0.064 | |