| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-11-12 11:58 -0500 (Wed, 12 Nov 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" | 4902 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4668 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 868/2361 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| getDEE2 1.20.0 (landing page) Mark 0000-0002-7688-6974 Ziemann
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the getDEE2 package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/getDEE2.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: getDEE2 |
| Version: 1.20.0 |
| Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data getDEE2 |
| StartedAt: 2025-11-11 02:01:19 -0000 (Tue, 11 Nov 2025) |
| EndedAt: 2025-11-11 02:08:43 -0000 (Tue, 11 Nov 2025) |
| EllapsedTime: 444.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data getDEE2
###
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* checking for file ‘getDEE2/DESCRIPTION’ ... OK
* preparing ‘getDEE2’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘getDEE2.Rmd’ using rmarkdown
trying URL 'http://dee2.io/metadata/celegans_metadata.tsv.cut'
Content type 'text/tab-separated-values' length 2773993 bytes (2.6 MB)
==================================================
downloaded 2.6 MB
trying URL 'http://dee2.io/cgi-bin/request.sh?org=celegans&x=SRR363796&x=SRR363797&x=SRR363798&x=SRR363799'
downloaded 1.2 MB
trying URL 'http://dee2.io/cgi-bin/request.sh?org=celegans&x=SRR363798&x=SRR363799'
downloaded 1.1 MB
trying URL 'http://dee2.io/cgi-bin/request.sh?org=celegans&x=SRR363796&x=SRR363797&x=SRR363798&x=SRR363799'
downloaded 1.2 MB
trying URL 'http://dee2.io/huge/athaliana/'
downloaded 847 KB
trying URL 'http://dee2.io/huge/athaliana/'
downloaded 805 KB
Quitting from getDEE2.Rmd:187-195 [bundle1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `getURL()`:
! 'getURL()' failed:
URL: http://dee2.io/huge/athaliana/
error: download from 'http://dee2.io/huge/athaliana/' failed
---
Backtrace:
▆
1. └─getDEE2::getDEE2_bundle(...)
2. └─getDEE2::list_bundles(species)
3. └─getDEE2:::getURL(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'getDEE2.Rmd' failed with diagnostics:
'getURL()' failed:
URL: http://dee2.io/huge/athaliana/
error: download from 'http://dee2.io/huge/athaliana/' failed
--- failed re-building ‘getDEE2.Rmd’
SUMMARY: processing the following file failed:
‘getDEE2.Rmd’
Error: Vignette re-building failed.
Execution halted