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This page was generated on 2025-04-22 13:18 -0400 (Tue, 22 Apr 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" | 4831 |
| palomino7 | Windows Server 2022 Datacenter | x64 | 4.5.0 RC (2025-04-04 r88126 ucrt) -- "How About a Twenty-Six" | 4573 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" | 4599 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | 4.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" | 4553 |
| kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4570 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 828/2341 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
Wei Sun
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | ERROR | ERROR | skipped | |||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | ERROR | ERROR | skipped | skipped | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | ERROR | ERROR | skipped | skipped | |||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | ERROR | ERROR | skipped | skipped | |||||||||
| kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | ERROR | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the genoCN package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/genoCN.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: genoCN |
| Version: 1.60.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL genoCN |
| StartedAt: 2025-04-21 15:01:16 -0400 (Mon, 21 Apr 2025) |
| EndedAt: 2025-04-21 15:01:19 -0400 (Mon, 21 Apr 2025) |
| EllapsedTime: 2.6 seconds |
| RetCode: 1 |
| Status: ERROR |
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###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL genoCN
###
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library’
* installing *source* package ‘genoCN’ ...
** this is package ‘genoCN’ version ‘1.60.0’
** using staged installation
** libs
using C compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’
using SDK: ‘MacOSX11.3.sdk’
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c tnorm_mle.c -o tnorm_mle.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c utility.c -o utility.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c xCNV.c -o xCNV.o
xCNV.c:317:16: warning: unused variable 'K' [-Wunused-variable]
int L, N, M, K, i, z, k, nGtp, contam=*contamR, CNA=*CNAR;
^
xCNV.c:317:25: warning: unused variable 'k' [-Wunused-variable]
int L, N, M, K, i, z, k, nGtp, contam=*contamR, CNA=*CNAR;
^
xCNV.c:449:25: error: call to undeclared function 'Calloc'; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration]
trans1 = (double**) Calloc(N, double*);
^
xCNV.c:449:35: error: expected expression
trans1 = (double**) Calloc(N, double*);
^
xCNV.c:450:39: error: expected expression
trans1[0] = (double*) Calloc(N*N, double);
^
xCNV.c:455:33: error: expected expression
v_old = (double *)Calloc(N, double);
^
xCNV.c:456:33: error: expected expression
v_new = (double *)Calloc(N, double);
^
xCNV.c:458:32: error: expected expression
path_m = (int**) Calloc(L, int*);
^
xCNV.c:459:36: error: expected expression
path_m[0] = (int*) Calloc(L*N, int);
^
xCNV.c:464:31: error: expected expression
tmp = (double *)Calloc(N, double);
^
xCNV.c:532:5: error: call to undeclared function 'Free'; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration]
Free(v_old);
^
xCNV.c:532:5: note: did you mean 'free'?
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/malloc/_malloc.h:42:7: note: 'free' declared here
void free(void *);
^
xCNV.c:579:19: error: call to undeclared function 'Calloc'; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration]
v = (double *)Calloc(N, double);
^
xCNV.c:579:29: error: expected expression
v = (double *)Calloc(N, double);
^
xCNV.c:581:35: error: expected expression
trans1 = (double**) Calloc(N, double*);
^
xCNV.c:582:39: error: expected expression
trans1[0] = (double*) Calloc(N*N, double);
^
xCNV.c:613:5: error: call to undeclared function 'Free'; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration]
Free(v);
^
xCNV.c:652:19: error: call to undeclared function 'Calloc'; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration]
v = (double *)Calloc(N, double);
^
xCNV.c:652:29: error: expected expression
v = (double *)Calloc(N, double);
^
xCNV.c:654:35: error: expected expression
trans1 = (double**) Calloc(N, double*);
^
xCNV.c:655:39: error: expected expression
trans1[0] = (double*) Calloc(N*N, double);
^
xCNV.c:683:3: error: call to undeclared function 'Free'; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration]
Free(v);
^
fatal error: too many errors emitted, stopping now [-ferror-limit=]
2 warnings and 20 errors generated.
make: *** [xCNV.o] Error 1
ERROR: compilation failed for package ‘genoCN’
* removing ‘/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/genoCN’