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This page was generated on 2026-04-29 10:15 -0400 (Wed, 29 Apr 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.4 LTS)x86_644.6.0 RC (2026-04-17 r89917) -- "Because it was There" 4988
kjohnson3macOS 13.7.7 Venturaarm644.6.0 Patched (2026-04-24 r89963) -- "Because it was There" 4694
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 969/2415HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
gVenn 1.2.0  (landing page)
Christophe Tav
Snapshot Date: 2026-04-28 14:14 -0400 (Tue, 28 Apr 2026)
git_url: https://git.bioconductor.org/packages/gVenn
git_branch: RELEASE_3_23
git_last_commit: 9defc4a
git_last_commit_date: 2026-04-28 09:05:30 -0400 (Tue, 28 Apr 2026)
nebbiolo1Linux (Ubuntu 24.04.4 LTS) / x86_64  OK    OK    ERROR  
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    ERROR    OK  
See other builds for gVenn in R Universe.


CHECK results for gVenn on kjohnson3

To the developers/maintainers of the gVenn package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/gVenn.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: gVenn
Version: 1.2.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:gVenn.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings gVenn_1.2.0.tar.gz
StartedAt: 2026-04-28 21:45:19 -0400 (Tue, 28 Apr 2026)
EndedAt: 2026-04-28 21:46:01 -0400 (Tue, 28 Apr 2026)
EllapsedTime: 41.5 seconds
RetCode: 1
Status:   ERROR  
CheckDir: gVenn.Rcheck
Warnings: NA

Command output

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### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:gVenn.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings gVenn_1.2.0.tar.gz
###
##############################################################################
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* using log directory ‘/Users/biocbuild/bbs-3.23-bioc/meat/gVenn.Rcheck’
* using R version 4.6.0 Patched (2026-04-24 r89963)
* using platform: aarch64-apple-darwin23
* R was compiled by
    Apple clang version 17.0.0 (clang-1700.3.19.1)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Tahoe 26.3.1
* using session charset: UTF-8
* current time: 2026-04-29 01:45:20 UTC
* using option ‘--no-vignettes’
* checking for file ‘gVenn/DESCRIPTION’ ... OK
* this is package ‘gVenn’ version ‘1.2.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘gVenn’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
  Error in `plot.euler(fit, fills = fills, edges = edges, labels = labels, quantities = quantities, legend = legend, main = main, ...)`: `fills$fill` must have length 1, n_sets, or n_subsets.
  Backtrace:
      ▆
   1. └─gVenn::plotVenn(obj) at test-plotVenn.R:48:5
   2.   ├─base::plot(...)
   3.   └─eulerr:::plot.euler(...)
  ── Failure ('test-plotVenn.R:70:5'): plotVenn() works with labels = TRUE ───────
  Expected `plotVenn(obj, labels = TRUE)` not to throw any errors.
  Actually got a <simpleError> with message:
    `fills$fill` must have length 1, n_sets, or n_subsets.
  
  [ FAIL 2 | WARN 0 | SKIP 8 | PASS 93 ]
  Error:
  ! Test failures.
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 ERROR
See
  ‘/Users/biocbuild/bbs-3.23-bioc/meat/gVenn.Rcheck/00check.log’
for details.


Installation output

gVenn.Rcheck/00install.out

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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL gVenn
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.6/Resources/library’
* installing *source* package ‘gVenn’ ...
** this is package ‘gVenn’ version ‘1.2.0’
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (gVenn)

Tests output

gVenn.Rcheck/tests/testthat.Rout.fail


R version 4.6.0 Patched (2026-04-24 r89963) -- "Because it was There"
Copyright (C) 2026 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin23

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
> 
> library(testthat)
> library(gVenn)
> 
> test_check("gVenn")
Saving _problems/test-plotVenn-48.R
Saving _problems/test-plotVenn-70.R
[ FAIL 2 | WARN 0 | SKIP 8 | PASS 93 ]

══ Skipped tests (8) ═══════════════════════════════════════════════════════════
• On CRAN (8): 'test-exportOverlaps.R:2:5', 'test-exportOverlaps.R:22:5',
  'test-plotUpSet.R:2:5', 'test-plotUpSet.R:42:5', 'test-saveViz.R:2:5',
  'test-saveViz.R:41:5', 'test-saveViz.R:60:5', 'test-saveViz.R:78:5'

══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-plotVenn.R:48:5'): plotVenn() returns a grid grob for SetOverlapResult ──
Error in `plot.euler(fit, fills = fills, edges = edges, labels = labels, quantities = quantities, legend = legend, main = main, ...)`: `fills$fill` must have length 1, n_sets, or n_subsets.
Backtrace:
    ▆
 1. └─gVenn::plotVenn(obj) at test-plotVenn.R:48:5
 2.   ├─base::plot(...)
 3.   └─eulerr:::plot.euler(...)
── Failure ('test-plotVenn.R:70:5'): plotVenn() works with labels = TRUE ───────
Expected `plotVenn(obj, labels = TRUE)` not to throw any errors.
Actually got a <simpleError> with message:
  `fills$fill` must have length 1, n_sets, or n_subsets.

[ FAIL 2 | WARN 0 | SKIP 8 | PASS 93 ]
Error:
! Test failures.
Execution halted

Example timings

gVenn.Rcheck/gVenn-Ex.timings

nameusersystemelapsed
a549_chipseq_peaks1.0050.0291.039
computeOverlaps0.1030.0040.106
exportOverlaps0.0960.0130.109
extractOverlaps0.1520.0030.155
gene_list0.0340.0010.035
plotUpSet1.3830.0201.408
plotVenn0.2690.0040.274
saveViz0.2980.0160.310
today000