Back to Multiple platform build/check report for BioC 3.22:   simplified   long
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This page was generated on 2025-11-11 12:02 -0500 (Tue, 11 Nov 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" 4902
kjohnson3macOS 13.7.7 Venturaarm644.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" 4638
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 673/2361HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
enrichViewNet 1.8.0  (landing page)
Astrid Deschênes
Snapshot Date: 2025-11-10 13:45 -0500 (Mon, 10 Nov 2025)
git_url: https://git.bioconductor.org/packages/enrichViewNet
git_branch: RELEASE_3_22
git_last_commit: 0359c98
git_last_commit_date: 2025-10-29 11:26:13 -0500 (Wed, 29 Oct 2025)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.7 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published


CHECK results for enrichViewNet on nebbiolo2

To the developers/maintainers of the enrichViewNet package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/enrichViewNet.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: enrichViewNet
Version: 1.8.0
Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:enrichViewNet.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings enrichViewNet_1.8.0.tar.gz
StartedAt: 2025-11-10 23:30:59 -0500 (Mon, 10 Nov 2025)
EndedAt: 2025-11-10 23:35:17 -0500 (Mon, 10 Nov 2025)
EllapsedTime: 258.2 seconds
RetCode: 0
Status:   OK  
CheckDir: enrichViewNet.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:enrichViewNet.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings enrichViewNet_1.8.0.tar.gz
###
##############################################################################
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* using log directory ‘/home/biocbuild/bbs-3.22-bioc/meat/enrichViewNet.Rcheck’
* using R version 4.5.1 Patched (2025-08-23 r88802)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* checking for file ‘enrichViewNet/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘enrichViewNet’ version ‘1.8.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘enrichViewNet’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                                      user system elapsed
extractInformationWhenNoIntersection 0.218  0.008  12.981
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

enrichViewNet.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD INSTALL enrichViewNet
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.22-bioc/R/site-library’
* installing *source* package ‘enrichViewNet’ ...
** this is package ‘enrichViewNet’ version ‘1.8.0’
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (enrichViewNet)

Tests output

enrichViewNet.Rcheck/tests/testthat.Rout


R version 4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(enrichViewNet)

> 
> ## Run all unit tests
> test_check("enrichViewNet")
[ FAIL 0 | WARN 1 | SKIP 0 | PASS 215 ]

[ FAIL 0 | WARN 1 | SKIP 0 | PASS 215 ]
> 
> proc.time()
   user  system elapsed 
 10.681   0.616  24.647 

Example timings

enrichViewNet.Rcheck/enrichViewNet-Ex.timings

nameusersystemelapsed
createBasicEmap1.2830.0751.358
createBasicEmapAsIgraph0.0820.0030.085
createCXJSONForCytoscape0.0880.0010.089
createCompareResultDataFrame0.0120.0020.014
createEnrichMap1.0740.0321.106
createEnrichMapAsIgraph0.3860.0760.462
createEnrichMapMultiBasic0.7470.0580.804
createEnrichMapMultiBasicAsIgraph0.6540.0340.688
createEnrichMapMultiComplex1.1410.0051.146
createEnrichMapMultiComplexAsIgraph0.6380.0270.665
createMetaDataSectionCXJSON0.0010.0000.001
createMultiEmap0.9510.0080.960
createMultiEmapAsIgraph0.0810.0020.082
createNetwork0.0480.0040.052
createNetworkForCytoscape0.0260.0020.028
demoGOST0.0400.0021.002
extractInformationWhenIntersection0.0300.0020.033
extractInformationWhenNoIntersection 0.218 0.00812.981
extractNodesAndEdgesInformation0.0240.0000.024
filterResults0.0010.0000.002
formatInformationForCXJSON0.030.000.03
isCytoscapeRunning0.0020.0010.003
manageNameDuplicationInEmap0.0030.0000.003
manageQueryDuplicationInEmap0.0010.0000.000
parentalNapaVsDMSODEG0.2260.0023.628
parentalNapaVsDMSOEnrichment0.5040.0020.506
removeRootTerm0.0040.0000.003
rosaNapaVsDMSODEG0.1190.0144.996
rosaNapaVsDMSOEnrichment0.4430.0120.456
similarityJaccard0.0030.0000.003
validateCreateEnrichMapArguments0.0010.0010.002
validateCreateEnrichMapAsIgraphArg0.0020.0000.002
validateCreateEnrichMapMultiBasicArgs0.0090.0000.009
validateCreateEnrichMapMultiBasicAsIgraphArgs0.0090.0000.009
validateCreateEnrichMapMultiBasicGOSTArgs0.0080.0000.008
validateCreateEnrichMapMultiComplexArg0.0070.0020.009
validateCreateEnrichMapMultiComplexAsIgraphArg0.0080.0010.009
validateCreateEnrichMapMultiComplexGostPartOne0.0070.0020.009
validateCreateEnrichMapMultiComplexGostPartTwo0.0080.0010.009
validateCreateEnrichMapSubSectionArguments000
validateCreateNetworkArguments0.0020.0000.002