Build/check report for BioC 3.22 - BUILD results for VennDetail on nebbiolo2

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.3 LTS)	x86_64	4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"	4888
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BUILD results for VennDetail on nebbiolo2

To the developers/maintainers of the VennDetail package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/VennDetail.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: VennDetail

Version: 1.26.0

Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 VennDetail

StartedAt: 2026-02-03 20:31:20 -0500 (Tue, 03 Feb 2026)

EndedAt: 2026-02-03 20:31:31 -0500 (Tue, 03 Feb 2026)

EllapsedTime: 11.0 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 VennDetail
###
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* checking for file ‘VennDetail/DESCRIPTION’ ... OK
* preparing ‘VennDetail’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘VennDetail.Rmd’ using rmarkdown

Quitting from VennDetail.Rmd:59-62 [fig2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/lifecycle_error_deprecated>
Error:
! `select_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `select()` instead.
---
Backtrace:
     ▆
  1. ├─base::plot(ven, type = "vennpie")
  2. ├─VennDetail:::plot.Venn(ven, type = "vennpie")
  3. │ ├─VennDetail::vennpie(...)
  4. │ └─VennDetail::vennpie(...)
  5. │   └─VennDetail (local) .local(...)
  6. │     └─lhs %>% filter_(~SharedSets >= min) %>% select_(~Detail)
  7. └─dplyr::select_(., ~Detail)
  8.   └─dplyr:::lazy_defunct("select", hint = FALSE)
  9.     └─lifecycle::deprecate_stop(...)
 10.       └─lifecycle:::deprecate_stop0(msg)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'VennDetail.Rmd' failed with diagnostics:
`select_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `select()` instead.
--- failed re-building ‘VennDetail.Rmd’

SUMMARY: processing the following file failed:
  ‘VennDetail.Rmd’

Error: Vignette re-building failed.
Execution halted