Multiple platform build/check report for BioC 3.21 - CHECK results for SVP on nebbiolo1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.3 LTS)	x86_64	4.5.1 (2025-06-13) -- "Great Square Root"	4827
merida1	macOS 12.7.5 Monterey	x86_64	4.5.1 RC (2025-06-05 r88288) -- "Great Square Root"	4608
kjohnson1	macOS 13.6.6 Ventura	arm64	4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root"	4549
kunpeng2	Linux (openEuler 24.03 LTS)	aarch64	R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences"	4580
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

CHECK results for SVP on nebbiolo1

To the developers/maintainers of the SVP package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVP.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: SVP

Version: 1.0.2

Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:SVP.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings SVP_1.0.2.tar.gz

StartedAt: 2025-09-29 04:15:33 -0400 (Mon, 29 Sep 2025)

EndedAt: 2025-09-29 04:21:56 -0400 (Mon, 29 Sep 2025)

EllapsedTime: 382.6 seconds

RetCode: 0

Status: OK

CheckDir: SVP.Rcheck

Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:SVP.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings SVP_1.0.2.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.21-bioc/meat/SVP.Rcheck’
* using R version 4.5.1 (2025-06-13)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* checking for file ‘SVP/DESCRIPTION’ ... OK
* this is package ‘SVP’ version ‘1.0.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... INFO
Imports includes 22 non-default packages.
Importing from so many packages makes the package vulnerable to any of
them becoming unavailable.  Move as many as possible to Suggests and
use conditionally.
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SVP’ can be installed ... OK
* used C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
* checking installed package size ... INFO
  installed size is 14.3Mb
  sub-directories of 1Mb or more:
    R      1.0Mb
    data   1.7Mb
    libs  11.3Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  LISAResult.Rd: SingleCellExperiment-class
  LISAsce-method.Rd: SingleCellExperiment-class,
    SpatialExperiment-class
  SVPExperiment.Rd: SingleCellExperiment, SingleCellExperiment-class
  cal_lisa_f1-method.Rd: SingleCellExperiment-class
  cluster.assign-method.Rd: SingleCellExperiment-class
  data_hpda_spe_cell_dec.Rd: SpatialExperiment-class
  data_sceSubPbmc.Rd: SingleCellExperiment-class
  extract_weight_adj-method.Rd: SingleCellExperiment-class,
    SpatialExperiment-class
  fscoreDfs.Rd: SingleCellExperiment-class, DataFrame-class, List-class
  gsvaExps.Rd: SingleCellExperiment-class, colData, List-class,
    assay<-, Annotated-class, metadata, Vector-class, mcols
  mob_sce.Rd: SingleCellExperiment-class
  pred.cell.signature-method.Rd: SingleCellExperiment-class
  runCORR-method.Rd: SingleCellExperiment-class,
    SpatialExperiment-class
  runDetectSVG-method.Rd: SingleCellExperiment-class,
    SpatialExperiment-class, SimpleList-class, DataFrame-class
  runENCODE-method.Rd: SingleCellExperiment-class,
    SpatialExperiment-class
  runGLOBALBV-method.Rd: SingleCellExperiment-class,
    SpatialExperiment-class
  runKldSVG-method.Rd: SingleCellExperiment-class,
    SpatialExperiment-class, SimpleList-class, DataFrame-class
  runLISA-method.Rd: SingleCellExperiment-class,
    SpatialExperiment-class, SimpleList-class
  runLOCALBV-method.Rd: SingleCellExperiment-class,
    SpatialExperiment-class, SimpleList-class
  runMCA-method.Rd: SingleCellExperiment-class
  runSGSA-method.Rd: SingleCellExperiment-class
  runWKDE-method.Rd: SingleCellExperiment-class,
    SpatialExperiment-class
  svDfs.Rd: SingleCellExperiment-class, DataFrame-class, List-class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... INFO
GNU make is a SystemRequirements.
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                   user system elapsed
runKldSVG-method 28.687  0.160   1.264
runSGSA-method   14.012  0.340  12.442
runWKDE-method    7.132  0.182   2.718
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.21-bioc/meat/SVP.Rcheck/00check.log’
for details.

Installation output

SVP.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL SVP
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.21-bioc/R/site-library’
* installing *source* package ‘SVP’ ...
** this is package ‘SVP’ version ‘1.0.2’
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/RcppParallel/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/RcppEigen/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/dqrng/include' -I/usr/local/include   -fopenmp -DARMA_64BIT_WORD -DNDEBUG -DEIGEN_DONT_VECTORIZE -fpic  -g -O2  -Wall -Werror=format-security  -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/RcppParallel/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/RcppEigen/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/dqrng/include' -I/usr/local/include   -fopenmp -DARMA_64BIT_WORD -DNDEBUG -DEIGEN_DONT_VECTORIZE -fpic  -g -O2  -Wall -Werror=format-security  -c autocorutils.cpp -o autocorutils.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/RcppParallel/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/RcppEigen/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/dqrng/include' -I/usr/local/include   -fopenmp -DARMA_64BIT_WORD -DNDEBUG -DEIGEN_DONT_VECTORIZE -fpic  -g -O2  -Wall -Werror=format-security  -c bisp.cpp -o bisp.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/RcppParallel/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/RcppEigen/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/dqrng/include' -I/usr/local/include   -fopenmp -DARMA_64BIT_WORD -DNDEBUG -DEIGEN_DONT_VECTORIZE -fpic  -g -O2  -Wall -Werror=format-security  -c cor.cpp -o cor.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/RcppParallel/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/RcppEigen/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/dqrng/include' -I/usr/local/include   -fopenmp -DARMA_64BIT_WORD -DNDEBUG -DEIGEN_DONT_VECTORIZE -fpic  -g -O2  -Wall -Werror=format-security  -c extract.cpp -o extract.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/RcppParallel/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/RcppEigen/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/dqrng/include' -I/usr/local/include   -fopenmp -DARMA_64BIT_WORD -DNDEBUG -DEIGEN_DONT_VECTORIZE -fpic  -g -O2  -Wall -Werror=format-security  -c gearysc.cpp -o gearysc.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/RcppParallel/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/RcppEigen/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/dqrng/include' -I/usr/local/include   -fopenmp -DARMA_64BIT_WORD -DNDEBUG -DEIGEN_DONT_VECTORIZE -fpic  -g -O2  -Wall -Werror=format-security  -c getisord.cpp -o getisord.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/RcppParallel/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/RcppEigen/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/dqrng/include' -I/usr/local/include   -fopenmp -DARMA_64BIT_WORD -DNDEBUG -DEIGEN_DONT_VECTORIZE -fpic  -g -O2  -Wall -Werror=format-security  -c kld.cpp -o kld.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/RcppParallel/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/RcppEigen/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/dqrng/include' -I/usr/local/include   -fopenmp -DARMA_64BIT_WORD -DNDEBUG -DEIGEN_DONT_VECTORIZE -fpic  -g -O2  -Wall -Werror=format-security  -c lisa.cpp -o lisa.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/RcppParallel/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/RcppEigen/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/dqrng/include' -I/usr/local/include   -fopenmp -DARMA_64BIT_WORD -DNDEBUG -DEIGEN_DONT_VECTORIZE -fpic  -g -O2  -Wall -Werror=format-security  -c mca.cpp -o mca.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/RcppParallel/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/RcppEigen/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/dqrng/include' -I/usr/local/include   -fopenmp -DARMA_64BIT_WORD -DNDEBUG -DEIGEN_DONT_VECTORIZE -fpic  -g -O2  -Wall -Werror=format-security  -c metric.cpp -o metric.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/RcppParallel/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/RcppEigen/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/dqrng/include' -I/usr/local/include   -fopenmp -DARMA_64BIT_WORD -DNDEBUG -DEIGEN_DONT_VECTORIZE -fpic  -g -O2  -Wall -Werror=format-security  -c moransi.cpp -o moransi.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/RcppParallel/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/RcppEigen/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/dqrng/include' -I/usr/local/include   -fopenmp -DARMA_64BIT_WORD -DNDEBUG -DEIGEN_DONT_VECTORIZE -fpic  -g -O2  -Wall -Werror=format-security  -c pairknn.cpp -o pairknn.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/RcppParallel/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/RcppEigen/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/dqrng/include' -I/usr/local/include   -fopenmp -DARMA_64BIT_WORD -DNDEBUG -DEIGEN_DONT_VECTORIZE -fpic  -g -O2  -Wall -Werror=format-security  -c rwr.cpp -o rwr.o
g++ -std=gnu++17 -shared -L/home/biocbuild/bbs-3.21-bioc/R/lib -L/usr/local/lib -o SVP.so RcppExports.o autocorutils.o bisp.o cor.o extract.o gearysc.o getisord.o kld.o lisa.o mca.o metric.o moransi.o pairknn.o rwr.o -fopenmp -llapack -L/home/biocbuild/bbs-3.21-bioc/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/biocbuild/bbs-3.21-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.21-bioc/R/site-library/00LOCK-SVP/00new/SVP/libs
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SVP)

Tests output

SVP.Rcheck/tests/testthat.Rout


R version 4.5.1 (2025-06-13) -- "Great Square Root"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
> 
> library(testthat)
> library(SVP)
> 
> test_check("SVP")
0%   10   20   30   40   50   60   70   80   90   100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
0%   10   20   30   40   50   60   70   80   90   100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
0%   10   20   30   40   50   60   70   80   90   100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
0%   10   20   30   40   50   60   70   80   90   100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
0%   10   20   30   40   50   60   70   80   90   100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
0%   10   20   30   40   50   60   70   80   90   100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
0%   10   20   30   40   50   60   70   80   90   100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
elapsed time is 0.030000 seconds 
0%   10   20   30   40   50   60   70   80   90   100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
elapsed time is 0.026000 seconds 
0%   10   20   30   40   50   60   70   80   90   100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
elapsed time is 0.024000 seconds 
0%   10   20   30   40   50   60   70   80   90   100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
elapsed time is 1.113000 seconds 
0%   10   20   30   40   50   60   70   80   90   100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
0%   10   20   30   40   50   60   70   80   90   100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
0%   10   20   30   40   50   60   70   80   90   100%
|----|----|----|----|----|----|----|----|----|----|
***************************************************
The result is added to the input object, which can be extracted using
`LISAResult()` with `type='localG.SVP'`, and a specified `features`.
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 43 ]
> 
> proc.time()
   user  system elapsed 
 43.213   0.938  14.602

Example timings

SVP.Rcheck/SVP-Ex.timings

name	user	system	elapsed
CellCycle.Hs	0.002	0.000	0.002
LISAResult	0.465	0.010	0.466
LISAsce-method	0.754	0.096	0.828
SVP-accessors	3.074	0.048	3.122
SVPExperiment	0.384	0.008	0.391
as_tbl_df	4.007	0.031	4.029
cal_lisa_f1-method	0.265	0.023	0.132
cluster.assign-method	0.307	0.011	0.319
data_CancerSEA	0.005	0.001	0.007
data_SenMayo	0.001	0.000	0.001
data_hpda_spe_cell_dec	0.013	0.000	0.013
data_sceSubPbmc	0.138	0.002	0.141
extract_weight_adj-method	0.158	0.002	0.159
fast_cor	0.007	0.000	0.002
fscoreDfs	1.209	0.006	1.215
gsvaExps	0.853	0.010	0.863
mob_marker_genes	0.000	0.001	0.001
mob_sce	0.329	0.015	0.344
plot_heatmap_globalbv	4.431	0.120	3.561
pred.cell.signature-method	3.075	0.113	3.191
runCORR-method	0.105	0.008	0.089
runDetectMarker-method	1.054	0.050	0.991
runDetectSVG-method	0.795	0.012	0.716
runENCODE-method	1.863	0.039	1.902
runGLOBALBV-method	1.114	0.055	0.321
runKldSVG-method	28.687	0.160	1.264
runLISA-method	2.013	0.111	2.067
runLOCALBV-method	0.949	0.020	0.962
runMCA-method	0.828	0.042	0.851
runSGSA-method	14.012	0.340	12.442
runWKDE-method	7.132	0.182	2.718
svDfs	0.468	0.008	0.477