| Back to Multiple platform build/check report for BioC 3.22: simplified long |
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This page was generated on 2025-12-25 11:59 -0500 (Thu, 25 Dec 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4883 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4671 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1769/2361 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| RepViz 1.26.0 (landing page) Thomas Faux, Asta Laiho
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the RepViz package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RepViz.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: RepViz |
| Version: 1.26.0 |
| Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 RepViz |
| StartedAt: 2025-12-22 19:40:54 -0500 (Mon, 22 Dec 2025) |
| EndedAt: 2025-12-22 19:41:23 -0500 (Mon, 22 Dec 2025) |
| EllapsedTime: 29.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 RepViz
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* checking for file ‘RepViz/DESCRIPTION’ ... OK
* preparing ‘RepViz’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘RepViz.Rmd’ using rmarkdown
Quitting from RepViz.Rmd:80-93 [plot_plot]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/httr2_failure>
Error in `req_perform()`:
! Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! SSL connect error [grch37.ensembl.org]:
gnutls_handshake() failed: An unexpected TLS packet was received.
---
Backtrace:
▆
1. └─RepViz::RepViz(...)
2. └─RepViz:::getBiomaRt(region, genome)
3. └─biomaRt::useMart(...)
4. └─biomaRt:::.useMart(...)
5. └─biomaRt:::.listMarts(...)
6. └─biomaRt:::bmRequest(...)
7. └─httr2::req_perform(request)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'RepViz.Rmd' failed with diagnostics:
Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! SSL connect error [grch37.ensembl.org]:
gnutls_handshake() failed: An unexpected TLS packet was received.
--- failed re-building ‘RepViz.Rmd’
SUMMARY: processing the following file failed:
‘RepViz.Rmd’
Error: Vignette re-building failed.
Execution halted