Multiple platform build/check report for BioC 3.21 - BUILD results for RNAdecay on kjohnson1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.3 LTS)	x86_64	4.5.1 (2025-06-13) -- "Great Square Root"	4827
merida1	macOS 12.7.5 Monterey	x86_64	4.5.1 RC (2025-06-05 r88288) -- "Great Square Root"	4608
kjohnson1	macOS 13.6.6 Ventura	arm64	4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root"	4549
kunpeng2	Linux (openEuler 24.03 LTS)	aarch64	R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences"	4581
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for RNAdecay on kjohnson1

To the developers/maintainers of the RNAdecay package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RNAdecay.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: RNAdecay

Version: 1.28.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data RNAdecay

StartedAt: 2025-09-23 07:52:37 -0400 (Tue, 23 Sep 2025)

EndedAt: 2025-09-23 07:59:45 -0400 (Tue, 23 Sep 2025)

EllapsedTime: 427.9 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data RNAdecay
###
##############################################################################
##############################################################################


* checking for file ‘RNAdecay/DESCRIPTION’ ... OK
* preparing ‘RNAdecay’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘RNAdecay_workflow.Rmd’ using rmarkdown

Quitting from RNAdecay_workflow.Rmd:535-569 [unnamed-chunk-34]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `vapply()`:
! values must be length 1,
 but FUN(X[[1]]) result is length 4
---
Backtrace:
     ▆
  1. ├─base::print(p)
  2. └─ggplot2 (local) `print.ggplot2::ggplot`(p)
  3.   ├─ggplot2::ggplot_gtable(data)
  4.   └─ggplot2 (local) `ggplot_gtable.ggplot2::ggplot_built`(data)
  5.     └─plot@guides$assemble(theme)
  6.       └─ggplot2 (local) assemble(..., self = self)
  7.         └─self$draw(theme, positions, theme$legend.direction)
  8.           └─ggplot2 (local) draw(..., self = self)
  9.             └─guides[[i]]$draw(...)
 10.               └─ggplot2 (local) draw(..., self = self)
 11.                 └─self$build_decor(params$decor, grobs, elems, params)
 12.                   └─ggplot2 (local) build_decor(...)
 13.                     └─base::lapply(...)
 14.                       └─ggplot2 (local) FUN(X[[i]], ...)
 15.                         └─base::vapply(glyph, get_attr, which = "width", default = 0, numeric(1))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'RNAdecay_workflow.Rmd' failed with diagnostics:
values must be length 1,
 but FUN(X[[1]]) result is length 4
--- failed re-building ‘RNAdecay_workflow.Rmd’

SUMMARY: processing the following file failed:
  ‘RNAdecay_workflow.Rmd’

Error: Vignette re-building failed.
Execution halted