| Back to Build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-11-13 11:55 -0500 (Thu, 13 Nov 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4668 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 966/2361 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| Heatplus 3.18.0 (landing page) Alexander Ploner
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | |||||||||
|
To the developers/maintainers of the Heatplus package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Heatplus.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: Heatplus |
| Version: 3.18.0 |
| Command: /home/biocbuild/R/R/bin/R CMD check --install=check:Heatplus.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings Heatplus_3.18.0.tar.gz |
| StartedAt: 2025-11-11 10:36:08 -0000 (Tue, 11 Nov 2025) |
| EndedAt: 2025-11-11 10:39:27 -0000 (Tue, 11 Nov 2025) |
| EllapsedTime: 199.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: Heatplus.Rcheck |
| Warnings: 0 |
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### Running command:
###
### /home/biocbuild/R/R/bin/R CMD check --install=check:Heatplus.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings Heatplus_3.18.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.22-bioc/meat/Heatplus.Rcheck’
* using R version 4.5.0 (2025-04-11)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0
GNU Fortran (GCC) 14.2.0
* running under: openEuler 24.03 (LTS)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘Heatplus/DESCRIPTION’ ... OK
* this is package ‘Heatplus’ version ‘3.18.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Heatplus’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
Unexported object imported by a ':::' call: ‘stats:::plotNode’
See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
BrewerClusterCol.Rd: brewer.pal.info, brewer.pal
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/home/biocbuild/bbs-3.22-bioc/meat/Heatplus.Rcheck/00check.log’
for details.
Heatplus.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD INSTALL Heatplus ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.5.0/site-library’ * installing *source* package ‘Heatplus’ ... ** this is package ‘Heatplus’ version ‘3.18.0’ ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Heatplus)
Heatplus.Rcheck/Heatplus-Ex.timings
| name | user | system | elapsed | |
| BrewerClusterCol | 0.057 | 0.010 | 0.068 | |
| RGBColVec | 0 | 0 | 0 | |
| annHeatmap | 0.922 | 0.031 | 0.956 | |
| annHeatmap2 | 0.175 | 0.000 | 0.175 | |
| breakColors | 0.006 | 0.000 | 0.006 | |
| convAnnData | 0.043 | 0.000 | 0.044 | |
| doLegend | 0.001 | 0.000 | 0.002 | |
| g2r.colors | 0.000 | 0.004 | 0.004 | |
| heatmapLayout | 0.000 | 0.002 | 0.002 | |
| heatmap_2 | 0 | 0 | 0 | |
| heatmap_plus | 0.000 | 0.001 | 0.001 | |
| modifyExistingList | 0.001 | 0.000 | 0.001 | |
| niceBreaks | 0.001 | 0.000 | 0.001 | |
| oldCutplot.dendrogram | 0 | 0 | 0 | |
| oldPicketplot | 0 | 0 | 0 | |
| picketPlot | 0.109 | 0.004 | 0.113 | |
| plot.annHeatmap | 0.182 | 0.003 | 0.186 | |
| print.annHeatmap | 0.015 | 0.000 | 0.015 | |
| regHeatmap | 0.033 | 0.000 | 0.033 | |