| Back to Build/check report for BioC 3.22: simplified long |
|
This page was generated on 2026-03-31 11:57 -0400 (Tue, 31 Mar 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4893 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1006/2361 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HPiP 1.16.1 (landing page) Matineh Rahmatbakhsh
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
| See other builds for HPiP in R Universe. | ||||||||||||||
|
To the developers/maintainers of the HPiP package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPiP.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: HPiP |
| Version: 1.16.1 |
| Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings HPiP_1.16.1.tar.gz |
| StartedAt: 2026-03-31 00:19:37 -0400 (Tue, 31 Mar 2026) |
| EndedAt: 2026-03-31 00:34:51 -0400 (Tue, 31 Mar 2026) |
| EllapsedTime: 914.0 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: HPiP.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings HPiP_1.16.1.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.22-bioc/meat/HPiP.Rcheck’
* using R version 4.5.2 (2025-10-31)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.4 LTS
* using session charset: UTF-8
* checking for file ‘HPiP/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HPiP’ version ‘1.16.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HPiP’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License stub is invalid DCF.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) getHPI.Rd:29: Lost braces
29 | then the Kronecker product is the code{(pm × qn)} block matrix
| ^
* checking Rd metadata ... OK
* checking Rd cross-references ... INFO
Package unavailable to check Rd xrefs: ‘ftrCOOL’
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
corr_plot 34.571 0.462 35.095
var_imp 33.863 0.678 34.564
FSmethod 33.492 0.523 34.015
pred_ensembel 13.335 0.282 12.276
enrichfindP 0.580 0.037 10.105
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/home/biocbuild/bbs-3.22-bioc/meat/HPiP.Rcheck/00check.log’
for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.22-bioc/R/site-library’ * installing *source* package ‘HPiP’ ... ** this is package ‘HPiP’ version ‘1.16.1’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage('HPiP')
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
avNNet
Loading required package: ggplot2
Loading required package: lattice
Fitting Repeat 1
# weights: 103
initial value 95.208552
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 97.900526
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 96.037083
iter 10 value 93.234390
iter 20 value 93.233385
iter 20 value 93.233384
iter 20 value 93.233384
final value 93.233384
converged
Fitting Repeat 4
# weights: 103
initial value 95.559053
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 98.598575
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 104.128605
iter 10 value 92.999221
iter 20 value 92.717727
iter 30 value 92.651636
final value 92.651629
converged
Fitting Repeat 2
# weights: 305
initial value 108.635997
iter 10 value 93.836067
final value 93.836066
converged
Fitting Repeat 3
# weights: 305
initial value 102.423782
final value 94.052910
converged
Fitting Repeat 4
# weights: 305
initial value 100.573950
final value 93.869755
converged
Fitting Repeat 5
# weights: 305
initial value 97.873434
final value 94.052910
converged
Fitting Repeat 1
# weights: 507
initial value 96.826671
iter 10 value 92.148283
iter 20 value 88.321040
iter 30 value 88.313973
final value 88.313950
converged
Fitting Repeat 2
# weights: 507
initial value 114.905798
final value 94.052910
converged
Fitting Repeat 3
# weights: 507
initial value 100.673150
final value 94.052911
converged
Fitting Repeat 4
# weights: 507
initial value 102.836085
iter 10 value 92.632807
iter 20 value 92.211112
iter 20 value 92.211111
iter 20 value 92.211111
final value 92.211111
converged
Fitting Repeat 5
# weights: 507
initial value 113.962494
final value 94.052910
converged
Fitting Repeat 1
# weights: 103
initial value 96.017383
iter 10 value 93.817346
iter 20 value 92.131199
iter 30 value 85.618942
iter 40 value 85.225420
iter 50 value 85.192944
final value 85.192936
converged
Fitting Repeat 2
# weights: 103
initial value 102.484664
iter 10 value 94.032419
iter 20 value 92.812238
iter 30 value 85.834597
iter 40 value 84.989277
iter 50 value 83.001584
iter 60 value 82.500517
iter 70 value 82.493645
final value 82.493632
converged
Fitting Repeat 3
# weights: 103
initial value 103.602529
iter 10 value 93.920697
iter 20 value 89.151161
iter 30 value 86.485003
iter 40 value 85.727838
iter 50 value 85.439604
iter 60 value 85.415653
iter 70 value 85.407490
iter 70 value 85.407490
iter 70 value 85.407490
final value 85.407490
converged
Fitting Repeat 4
# weights: 103
initial value 100.427983
iter 10 value 93.924545
iter 20 value 93.211354
iter 30 value 93.139305
iter 40 value 91.817118
iter 50 value 85.608967
iter 60 value 83.848629
iter 70 value 83.616723
iter 80 value 83.496787
iter 90 value 83.372597
iter 100 value 83.080038
final value 83.080038
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 100.527694
iter 10 value 94.027808
iter 20 value 87.083067
iter 30 value 85.375725
iter 40 value 85.210512
iter 50 value 84.974202
iter 60 value 84.837520
iter 70 value 84.832737
final value 84.832711
converged
Fitting Repeat 1
# weights: 305
initial value 102.023436
iter 10 value 94.054416
iter 20 value 93.481998
iter 30 value 90.202022
iter 40 value 87.635862
iter 50 value 86.446927
iter 60 value 85.722534
iter 70 value 85.638226
iter 80 value 83.493527
iter 90 value 82.575661
iter 100 value 82.279494
final value 82.279494
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 101.176006
iter 10 value 94.393691
iter 20 value 93.775715
iter 30 value 92.425836
iter 40 value 88.936855
iter 50 value 85.400591
iter 60 value 84.526368
iter 70 value 84.134435
iter 80 value 83.923202
iter 90 value 83.886868
iter 100 value 83.585859
final value 83.585859
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 99.442397
iter 10 value 93.955803
iter 20 value 93.103503
iter 30 value 89.909890
iter 40 value 84.723346
iter 50 value 82.877749
iter 60 value 82.320970
iter 70 value 81.960664
iter 80 value 81.714614
iter 90 value 81.618270
iter 100 value 81.416707
final value 81.416707
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 113.515416
iter 10 value 94.016961
iter 20 value 93.566360
iter 30 value 91.806899
iter 40 value 87.784336
iter 50 value 83.511054
iter 60 value 82.418017
iter 70 value 82.204264
iter 80 value 81.763966
iter 90 value 81.497330
iter 100 value 81.336349
final value 81.336349
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 116.352385
iter 10 value 94.123880
iter 20 value 93.696435
iter 30 value 93.282546
iter 40 value 89.272616
iter 50 value 87.297835
iter 60 value 85.322514
iter 70 value 84.773442
iter 80 value 82.425825
iter 90 value 81.834736
iter 100 value 81.646653
final value 81.646653
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 103.573629
iter 10 value 94.506769
iter 20 value 89.018697
iter 30 value 85.709967
iter 40 value 84.775856
iter 50 value 84.228314
iter 60 value 83.741668
iter 70 value 83.112712
iter 80 value 81.893301
iter 90 value 81.574217
iter 100 value 81.235225
final value 81.235225
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 107.307790
iter 10 value 95.646073
iter 20 value 87.604902
iter 30 value 85.635618
iter 40 value 85.403286
iter 50 value 85.190022
iter 60 value 84.827258
iter 70 value 84.645614
iter 80 value 83.754552
iter 90 value 82.698604
iter 100 value 82.144022
final value 82.144022
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 111.716342
iter 10 value 94.484061
iter 20 value 87.521106
iter 30 value 85.861126
iter 40 value 85.739172
iter 50 value 84.447756
iter 60 value 82.087954
iter 70 value 81.719444
iter 80 value 81.273260
iter 90 value 81.033100
iter 100 value 80.968229
final value 80.968229
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 113.882710
iter 10 value 94.790591
iter 20 value 92.769110
iter 30 value 87.616583
iter 40 value 86.440663
iter 50 value 85.950246
iter 60 value 85.301620
iter 70 value 85.123117
iter 80 value 83.969292
iter 90 value 83.168690
iter 100 value 82.938731
final value 82.938731
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 116.389563
iter 10 value 93.940504
iter 20 value 88.995174
iter 30 value 88.251016
iter 40 value 86.632194
iter 50 value 83.879501
iter 60 value 83.485105
iter 70 value 82.484421
iter 80 value 82.288116
iter 90 value 82.202781
iter 100 value 82.128132
final value 82.128132
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 96.916564
final value 94.054870
converged
Fitting Repeat 2
# weights: 103
initial value 97.282113
final value 94.054325
converged
Fitting Repeat 3
# weights: 103
initial value 103.042139
final value 94.054593
converged
Fitting Repeat 4
# weights: 103
initial value 99.550485
final value 94.054453
converged
Fitting Repeat 5
# weights: 103
initial value 101.713323
final value 94.054683
converged
Fitting Repeat 1
# weights: 305
initial value 110.734888
iter 10 value 93.834154
iter 20 value 90.568279
iter 30 value 87.613467
iter 40 value 85.822342
iter 50 value 85.061974
iter 60 value 85.022392
iter 70 value 84.842836
iter 80 value 83.753141
iter 90 value 82.074665
iter 100 value 81.624361
final value 81.624361
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 100.405848
iter 10 value 94.057671
iter 20 value 94.052922
iter 30 value 93.467818
iter 40 value 93.369295
iter 50 value 89.316986
iter 60 value 89.237550
iter 70 value 84.999001
iter 80 value 83.009835
iter 90 value 82.351339
iter 100 value 82.349861
final value 82.349861
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 101.369098
iter 10 value 93.637770
iter 20 value 93.388948
iter 30 value 93.382665
iter 40 value 93.381402
final value 93.378691
converged
Fitting Repeat 4
# weights: 305
initial value 119.779963
iter 10 value 93.840768
iter 20 value 93.378289
iter 30 value 93.377955
final value 93.377790
converged
Fitting Repeat 5
# weights: 305
initial value 102.228542
iter 10 value 94.057812
iter 20 value 93.909245
iter 30 value 88.972034
iter 40 value 86.253401
iter 50 value 86.251393
iter 60 value 85.639165
iter 70 value 85.453095
iter 80 value 85.250139
iter 90 value 85.080304
iter 100 value 85.014956
final value 85.014956
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 103.958474
iter 10 value 94.063476
iter 20 value 94.055748
final value 94.055745
converged
Fitting Repeat 2
# weights: 507
initial value 94.762571
iter 10 value 94.059762
iter 20 value 87.461889
iter 30 value 87.047995
iter 40 value 86.604983
iter 50 value 85.329835
iter 60 value 84.832581
iter 70 value 84.014984
iter 80 value 81.334329
iter 90 value 81.124134
iter 100 value 81.122011
final value 81.122011
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 106.083498
iter 10 value 85.739118
iter 20 value 85.022843
iter 30 value 85.016107
iter 40 value 85.012959
iter 50 value 85.012194
iter 60 value 84.924952
iter 70 value 84.883815
final value 84.882426
converged
Fitting Repeat 4
# weights: 507
initial value 99.568302
iter 10 value 94.061201
iter 20 value 94.042737
iter 30 value 86.717871
iter 40 value 84.740519
iter 50 value 81.285868
iter 60 value 80.234830
iter 70 value 79.757364
iter 80 value 79.633286
iter 90 value 79.600918
iter 100 value 79.597993
final value 79.597993
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 100.495601
iter 10 value 87.217354
iter 20 value 85.526366
iter 30 value 85.424365
iter 40 value 85.287464
iter 50 value 85.282999
iter 60 value 84.369542
iter 70 value 82.655526
iter 80 value 80.737139
iter 90 value 80.512038
iter 100 value 80.511546
final value 80.511546
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 94.417544
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 117.188905
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 104.398135
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 99.622727
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 102.445603
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 104.690549
iter 10 value 93.807659
iter 20 value 93.714288
iter 20 value 93.714288
iter 20 value 93.714288
final value 93.714288
converged
Fitting Repeat 2
# weights: 305
initial value 96.266951
final value 93.582418
converged
Fitting Repeat 3
# weights: 305
initial value 110.800805
final value 94.052910
converged
Fitting Repeat 4
# weights: 305
initial value 103.694579
final value 94.052910
converged
Fitting Repeat 5
# weights: 305
initial value 98.382614
final value 93.582417
converged
Fitting Repeat 1
# weights: 507
initial value 121.034332
final value 92.861582
converged
Fitting Repeat 2
# weights: 507
initial value 111.669534
final value 94.052910
converged
Fitting Repeat 3
# weights: 507
initial value 119.069250
iter 10 value 93.523810
iter 10 value 93.523810
iter 10 value 93.523810
final value 93.523810
converged
Fitting Repeat 4
# weights: 507
initial value 128.463718
iter 10 value 93.714293
final value 93.714286
converged
Fitting Repeat 5
# weights: 507
initial value 96.183484
final value 93.582418
converged
Fitting Repeat 1
# weights: 103
initial value 97.581570
iter 10 value 94.053006
iter 20 value 85.762464
iter 30 value 85.430947
iter 40 value 84.770110
iter 50 value 84.602671
final value 84.601693
converged
Fitting Repeat 2
# weights: 103
initial value 103.872547
iter 10 value 94.060047
iter 20 value 91.869274
iter 30 value 90.116088
iter 40 value 84.878440
iter 50 value 84.639284
iter 60 value 84.047370
iter 70 value 83.104471
iter 80 value 83.071264
iter 90 value 82.989069
iter 100 value 82.906306
final value 82.906306
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 98.507028
iter 10 value 94.031121
iter 20 value 93.316653
iter 30 value 93.218071
iter 40 value 93.120571
iter 50 value 92.689847
iter 60 value 88.747617
iter 70 value 88.274960
iter 80 value 85.926779
iter 90 value 83.393345
iter 100 value 83.035594
final value 83.035594
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 102.051417
iter 10 value 92.605028
iter 20 value 85.973542
iter 30 value 85.465807
iter 40 value 84.989560
iter 50 value 83.735617
iter 60 value 82.942650
iter 70 value 82.904920
final value 82.904816
converged
Fitting Repeat 5
# weights: 103
initial value 97.429554
iter 10 value 94.227898
iter 20 value 93.202650
iter 30 value 86.765832
iter 40 value 85.210105
iter 50 value 84.899458
iter 60 value 84.556301
iter 70 value 82.743393
iter 80 value 82.001675
iter 90 value 81.312836
iter 100 value 81.283746
final value 81.283746
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 122.966134
iter 10 value 94.069512
iter 20 value 91.288889
iter 30 value 87.108385
iter 40 value 86.675345
iter 50 value 84.767450
iter 60 value 83.817616
iter 70 value 82.762470
iter 80 value 82.147003
iter 90 value 81.520841
iter 100 value 81.106237
final value 81.106237
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 114.564799
iter 10 value 93.993155
iter 20 value 88.672023
iter 30 value 86.969565
iter 40 value 83.318538
iter 50 value 82.616592
iter 60 value 82.178072
iter 70 value 80.751116
iter 80 value 80.235406
iter 90 value 80.142937
iter 100 value 80.101778
final value 80.101778
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 106.339038
iter 10 value 94.072782
iter 20 value 87.345773
iter 30 value 86.441152
iter 40 value 83.091814
iter 50 value 81.714540
iter 60 value 80.921159
iter 70 value 80.739961
iter 80 value 80.279727
iter 90 value 79.829632
iter 100 value 79.591355
final value 79.591355
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 102.575520
iter 10 value 94.492701
iter 20 value 94.033567
iter 30 value 93.438289
iter 40 value 92.646000
iter 50 value 89.946304
iter 60 value 87.226948
iter 70 value 85.751426
iter 80 value 83.545668
iter 90 value 80.742182
iter 100 value 80.203870
final value 80.203870
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 100.030192
iter 10 value 94.114407
iter 20 value 93.707003
iter 30 value 93.170620
iter 40 value 91.270959
iter 50 value 87.739560
iter 60 value 86.104537
iter 70 value 85.342854
iter 80 value 83.464876
iter 90 value 81.928251
iter 100 value 80.489289
final value 80.489289
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 107.814850
iter 10 value 92.905827
iter 20 value 92.281720
iter 30 value 88.050233
iter 40 value 83.271734
iter 50 value 83.152670
iter 60 value 82.472942
iter 70 value 81.556911
iter 80 value 81.215566
iter 90 value 80.813319
iter 100 value 80.241753
final value 80.241753
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 107.103205
iter 10 value 92.785205
iter 20 value 86.995662
iter 30 value 84.470398
iter 40 value 83.948911
iter 50 value 83.255284
iter 60 value 83.108836
iter 70 value 82.772939
iter 80 value 81.282566
iter 90 value 80.924128
iter 100 value 80.679787
final value 80.679787
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 111.700316
iter 10 value 93.936779
iter 20 value 92.267825
iter 30 value 85.566142
iter 40 value 83.581472
iter 50 value 81.944535
iter 60 value 81.219859
iter 70 value 80.553843
iter 80 value 80.325020
iter 90 value 80.160526
iter 100 value 79.826807
final value 79.826807
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 115.910494
iter 10 value 93.363344
iter 20 value 85.196314
iter 30 value 84.229175
iter 40 value 84.096934
iter 50 value 83.480055
iter 60 value 83.084709
iter 70 value 82.891324
iter 80 value 82.630241
iter 90 value 81.523768
iter 100 value 80.266968
final value 80.266968
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 104.884698
iter 10 value 95.190524
iter 20 value 94.124138
iter 30 value 92.259035
iter 40 value 86.495155
iter 50 value 85.349156
iter 60 value 84.306633
iter 70 value 83.334248
iter 80 value 82.200094
iter 90 value 81.540853
iter 100 value 81.241658
final value 81.241658
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 96.374165
final value 94.054470
converged
Fitting Repeat 2
# weights: 103
initial value 95.797626
final value 94.054489
converged
Fitting Repeat 3
# weights: 103
initial value 95.644003
iter 10 value 93.584374
iter 20 value 93.534532
iter 30 value 85.902039
iter 40 value 85.886079
iter 40 value 85.886079
final value 85.886079
converged
Fitting Repeat 4
# weights: 103
initial value 97.286656
final value 94.054534
converged
Fitting Repeat 5
# weights: 103
initial value 94.533627
final value 94.054612
converged
Fitting Repeat 1
# weights: 305
initial value 101.503976
iter 10 value 93.587264
iter 20 value 93.290856
iter 30 value 85.481033
iter 40 value 85.254619
iter 50 value 85.076793
iter 60 value 84.980939
iter 70 value 83.995087
iter 80 value 83.719466
iter 90 value 83.710311
iter 100 value 83.709082
final value 83.709082
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 95.212799
iter 10 value 93.908768
iter 20 value 93.902510
iter 30 value 91.203245
iter 40 value 89.928724
iter 50 value 86.385252
iter 60 value 86.175292
iter 70 value 83.615234
iter 80 value 82.891494
final value 82.891114
converged
Fitting Repeat 3
# weights: 305
initial value 94.639974
iter 10 value 94.057294
iter 20 value 94.045092
iter 30 value 84.391379
iter 40 value 84.335044
iter 50 value 84.122053
final value 84.117640
converged
Fitting Repeat 4
# weights: 305
initial value 96.226727
iter 10 value 93.587379
iter 20 value 89.469366
iter 30 value 87.509616
iter 40 value 87.402329
iter 50 value 87.310610
final value 87.308948
converged
Fitting Repeat 5
# weights: 305
initial value 100.391683
iter 10 value 94.057589
iter 20 value 93.903058
final value 93.193059
converged
Fitting Repeat 1
# weights: 507
initial value 111.489681
iter 10 value 93.590780
iter 20 value 93.359537
iter 30 value 87.168442
iter 40 value 86.571937
final value 86.571885
converged
Fitting Repeat 2
# weights: 507
initial value 97.590578
iter 10 value 94.060871
iter 20 value 94.044891
iter 30 value 93.193863
iter 30 value 93.193862
iter 30 value 93.193862
final value 93.193862
converged
Fitting Repeat 3
# weights: 507
initial value 104.485208
iter 10 value 94.060734
iter 20 value 93.779552
final value 93.192698
converged
Fitting Repeat 4
# weights: 507
initial value 98.421251
iter 10 value 85.578243
iter 20 value 84.082083
iter 30 value 84.073916
iter 40 value 83.935058
iter 50 value 83.875147
iter 60 value 83.869167
iter 70 value 83.629346
iter 80 value 81.659629
iter 90 value 80.734190
iter 100 value 80.576995
final value 80.576995
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 116.403501
iter 10 value 93.919330
iter 20 value 93.410915
iter 30 value 93.384887
iter 40 value 93.016781
iter 50 value 92.900608
iter 60 value 86.344251
iter 70 value 83.951787
iter 80 value 83.623054
iter 90 value 82.471680
iter 100 value 79.451723
final value 79.451723
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 101.486404
final value 94.484210
converged
Fitting Repeat 2
# weights: 103
initial value 107.162196
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 96.466879
iter 10 value 93.900280
final value 93.900041
converged
Fitting Repeat 4
# weights: 103
initial value 95.297220
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 95.827813
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 107.455283
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 120.316883
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 99.428234
final value 94.400000
converged
Fitting Repeat 4
# weights: 305
initial value 98.654679
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 98.819589
iter 10 value 94.149191
iter 20 value 94.055917
final value 94.055814
converged
Fitting Repeat 1
# weights: 507
initial value 100.171544
iter 10 value 94.390910
iter 10 value 94.390909
iter 10 value 94.390909
final value 94.390909
converged
Fitting Repeat 2
# weights: 507
initial value 104.965481
final value 94.473119
converged
Fitting Repeat 3
# weights: 507
initial value 106.755289
final value 94.484211
converged
Fitting Repeat 4
# weights: 507
initial value 98.029301
iter 10 value 88.076521
iter 20 value 84.102414
iter 30 value 83.962481
iter 40 value 83.895333
iter 50 value 83.284485
iter 60 value 83.279621
iter 70 value 83.275650
iter 80 value 82.178087
iter 90 value 82.094791
iter 100 value 82.084452
final value 82.084452
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 117.361721
iter 10 value 94.473118
iter 10 value 94.473118
iter 10 value 94.473118
final value 94.473118
converged
Fitting Repeat 1
# weights: 103
initial value 101.110397
iter 10 value 94.486477
iter 20 value 94.347383
iter 30 value 88.199215
iter 40 value 86.075598
iter 50 value 85.222980
iter 60 value 84.295445
iter 70 value 83.949618
final value 83.949476
converged
Fitting Repeat 2
# weights: 103
initial value 103.011681
iter 10 value 94.482685
iter 20 value 84.711235
iter 30 value 84.344074
iter 40 value 84.106309
iter 50 value 83.200517
iter 60 value 82.976489
iter 70 value 82.942136
iter 80 value 82.938224
iter 90 value 82.936775
final value 82.936759
converged
Fitting Repeat 3
# weights: 103
initial value 106.136272
iter 10 value 94.555768
iter 20 value 94.484439
iter 30 value 94.220403
iter 40 value 94.103807
iter 50 value 94.083776
iter 60 value 94.001236
iter 70 value 89.668275
iter 80 value 87.652721
iter 90 value 87.022516
iter 100 value 84.466265
final value 84.466265
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 97.545433
iter 10 value 94.488901
iter 20 value 92.234401
iter 30 value 87.992417
iter 40 value 86.875400
iter 50 value 86.646281
iter 60 value 83.909617
iter 70 value 83.693689
iter 80 value 83.499221
iter 90 value 83.488276
iter 100 value 83.487215
final value 83.487215
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 97.595312
iter 10 value 94.442483
iter 20 value 88.213456
iter 30 value 86.997528
iter 40 value 84.914113
iter 50 value 84.269230
iter 60 value 83.951276
final value 83.949477
converged
Fitting Repeat 1
# weights: 305
initial value 109.822944
iter 10 value 94.562458
iter 20 value 90.301941
iter 30 value 85.388709
iter 40 value 84.020925
iter 50 value 83.863017
iter 60 value 83.806096
iter 70 value 82.538378
iter 80 value 82.472394
iter 90 value 82.455575
iter 100 value 82.371262
final value 82.371262
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 101.129181
iter 10 value 86.619208
iter 20 value 85.162241
iter 30 value 84.956850
iter 40 value 82.992067
iter 50 value 82.624926
iter 60 value 82.002506
iter 70 value 81.512387
iter 80 value 81.351587
iter 90 value 81.342018
iter 100 value 81.327608
final value 81.327608
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 111.150377
iter 10 value 94.412399
iter 20 value 93.058480
iter 30 value 92.413715
iter 40 value 92.194233
iter 50 value 86.624793
iter 60 value 83.012867
iter 70 value 82.498495
iter 80 value 82.149844
iter 90 value 81.961421
iter 100 value 81.731691
final value 81.731691
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 99.491569
iter 10 value 94.304433
iter 20 value 93.245907
iter 30 value 82.570897
iter 40 value 80.497642
iter 50 value 79.786023
iter 60 value 79.600712
iter 70 value 79.463636
iter 80 value 79.433745
iter 90 value 79.354159
iter 100 value 79.312663
final value 79.312663
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 102.613797
iter 10 value 94.479567
iter 20 value 91.026425
iter 30 value 89.909177
iter 40 value 86.016850
iter 50 value 83.596801
iter 60 value 83.097226
iter 70 value 82.732158
iter 80 value 82.383125
iter 90 value 80.681804
iter 100 value 80.232754
final value 80.232754
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 106.233875
iter 10 value 94.474612
iter 20 value 90.999864
iter 30 value 88.728278
iter 40 value 87.933685
iter 50 value 86.051100
iter 60 value 82.863602
iter 70 value 81.682468
iter 80 value 81.322529
iter 90 value 81.078280
iter 100 value 80.668824
final value 80.668824
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 103.214045
iter 10 value 94.290883
iter 20 value 85.312582
iter 30 value 84.247327
iter 40 value 83.795215
iter 50 value 82.139218
iter 60 value 80.788531
iter 70 value 79.997556
iter 80 value 79.768563
iter 90 value 79.659979
iter 100 value 79.409717
final value 79.409717
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 107.455876
iter 10 value 95.685985
iter 20 value 93.827508
iter 30 value 88.197109
iter 40 value 83.722282
iter 50 value 82.757093
iter 60 value 82.184501
iter 70 value 80.835974
iter 80 value 80.294007
iter 90 value 79.967041
iter 100 value 79.715639
final value 79.715639
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 120.293100
iter 10 value 94.650620
iter 20 value 86.231092
iter 30 value 84.026668
iter 40 value 83.176266
iter 50 value 82.930975
iter 60 value 82.666401
iter 70 value 82.547329
iter 80 value 82.490823
iter 90 value 82.434388
iter 100 value 82.291976
final value 82.291976
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 105.444272
iter 10 value 95.892815
iter 20 value 94.874320
iter 30 value 88.287197
iter 40 value 86.677820
iter 50 value 86.341766
iter 60 value 86.297762
iter 70 value 85.721617
iter 80 value 83.576696
iter 90 value 81.626540
iter 100 value 80.877508
final value 80.877508
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 97.512366
final value 94.474494
converged
Fitting Repeat 2
# weights: 103
initial value 99.968685
final value 94.485722
converged
Fitting Repeat 3
# weights: 103
initial value 101.099063
final value 94.485687
converged
Fitting Repeat 4
# weights: 103
initial value 111.066313
final value 94.485671
converged
Fitting Repeat 5
# weights: 103
initial value 99.257459
final value 94.485803
converged
Fitting Repeat 1
# weights: 305
initial value 111.113383
iter 10 value 94.478241
iter 20 value 94.473770
iter 30 value 94.430352
iter 40 value 84.141489
iter 50 value 84.041434
iter 60 value 83.636398
iter 70 value 83.144896
iter 80 value 83.144264
iter 90 value 83.142488
iter 100 value 82.901029
final value 82.901029
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 101.678090
iter 10 value 94.489135
iter 20 value 94.483546
iter 30 value 90.023481
iter 40 value 85.547652
iter 50 value 85.128155
iter 60 value 82.200795
iter 70 value 82.068310
iter 80 value 81.267034
iter 90 value 80.811448
iter 100 value 80.809897
final value 80.809897
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 100.331230
iter 10 value 94.491134
iter 20 value 92.095894
iter 30 value 83.801850
iter 40 value 83.740080
iter 50 value 83.738425
iter 60 value 83.733003
iter 70 value 83.732694
iter 80 value 83.730428
iter 90 value 83.725043
final value 83.724897
converged
Fitting Repeat 4
# weights: 305
initial value 98.605947
iter 10 value 94.488294
iter 20 value 94.449756
iter 30 value 84.494493
iter 40 value 84.021047
iter 50 value 80.842935
iter 60 value 79.150447
iter 70 value 79.146137
iter 80 value 79.116785
iter 90 value 79.103921
iter 100 value 78.843288
final value 78.843288
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 105.691101
iter 10 value 94.487382
iter 20 value 93.990765
iter 30 value 92.427756
iter 40 value 84.072345
iter 50 value 81.874020
iter 60 value 80.226530
iter 70 value 79.508071
iter 80 value 79.246890
iter 90 value 78.965938
iter 100 value 78.526173
final value 78.526173
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 119.206544
iter 10 value 94.494592
iter 20 value 94.468692
iter 30 value 94.097505
iter 40 value 94.066230
iter 50 value 94.064893
iter 60 value 93.983416
iter 70 value 89.100384
iter 80 value 85.910036
iter 90 value 82.006101
iter 100 value 80.571922
final value 80.571922
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 106.868302
iter 10 value 94.481925
iter 20 value 94.407468
iter 30 value 94.392080
iter 30 value 94.392080
iter 30 value 94.392080
final value 94.392080
converged
Fitting Repeat 3
# weights: 507
initial value 95.788708
iter 10 value 94.241905
iter 20 value 94.239656
iter 30 value 93.588464
iter 40 value 92.811931
iter 50 value 92.811416
iter 60 value 92.702862
iter 70 value 87.688608
iter 80 value 85.090746
iter 90 value 83.762930
iter 100 value 80.698870
final value 80.698870
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 130.280995
iter 10 value 94.480981
iter 20 value 94.434519
iter 30 value 92.799053
iter 40 value 88.296402
iter 50 value 88.277242
iter 60 value 88.276706
iter 70 value 87.410951
iter 80 value 87.169366
iter 90 value 87.167516
iter 100 value 86.929905
final value 86.929905
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 95.347332
iter 10 value 94.492413
final value 94.484519
converged
Fitting Repeat 1
# weights: 103
initial value 97.990167
final value 94.354396
converged
Fitting Repeat 2
# weights: 103
initial value 101.202607
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 100.355169
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 103.798488
iter 10 value 90.913859
iter 20 value 90.913052
final value 90.913044
converged
Fitting Repeat 5
# weights: 103
initial value 101.310580
final value 94.326054
converged
Fitting Repeat 1
# weights: 305
initial value 103.405197
iter 10 value 90.349343
iter 20 value 80.265055
final value 80.257496
converged
Fitting Repeat 2
# weights: 305
initial value 97.948921
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 106.179564
iter 10 value 94.333759
final value 94.326051
converged
Fitting Repeat 4
# weights: 305
initial value 98.289161
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 97.261588
iter 10 value 94.484294
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 99.269143
final value 94.484211
converged
Fitting Repeat 2
# weights: 507
initial value 121.479738
final value 94.484211
converged
Fitting Repeat 3
# weights: 507
initial value 96.351256
final value 94.354396
converged
Fitting Repeat 4
# weights: 507
initial value 94.974618
iter 10 value 88.711835
iter 20 value 88.706777
iter 30 value 88.685834
iter 40 value 88.683958
final value 88.683951
converged
Fitting Repeat 5
# weights: 507
initial value 101.392257
final value 94.484211
converged
Fitting Repeat 1
# weights: 103
initial value 99.408035
iter 10 value 86.589064
iter 20 value 81.818752
iter 30 value 81.555706
iter 40 value 81.507322
iter 50 value 81.462313
iter 60 value 80.709690
iter 70 value 78.743925
iter 80 value 77.560810
iter 90 value 77.456448
iter 100 value 77.272852
final value 77.272852
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 103.352696
iter 10 value 94.488558
iter 20 value 84.350209
iter 30 value 82.911086
iter 40 value 82.745365
iter 50 value 82.663907
iter 60 value 82.547509
iter 70 value 80.696845
iter 80 value 77.821060
iter 90 value 76.931186
iter 100 value 76.922935
final value 76.922935
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 96.295933
iter 10 value 94.488496
iter 20 value 85.311861
iter 30 value 81.975291
iter 40 value 81.623807
iter 50 value 81.134547
iter 60 value 78.365593
iter 70 value 77.862750
iter 80 value 77.802317
final value 77.753022
converged
Fitting Repeat 4
# weights: 103
initial value 103.850407
iter 10 value 94.488546
iter 20 value 93.977283
iter 30 value 85.957167
iter 40 value 82.254281
iter 50 value 82.187771
iter 60 value 81.510415
iter 70 value 81.470853
final value 81.463032
converged
Fitting Repeat 5
# weights: 103
initial value 106.438204
iter 10 value 94.491494
iter 20 value 88.247014
iter 30 value 84.834399
iter 40 value 84.515862
iter 50 value 84.175780
iter 60 value 79.750436
iter 70 value 78.108299
iter 80 value 77.593144
iter 90 value 77.501141
iter 100 value 77.435818
final value 77.435818
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 115.830157
iter 10 value 89.266616
iter 20 value 84.531829
iter 30 value 80.661031
iter 40 value 78.637232
iter 50 value 77.722545
iter 60 value 76.794626
iter 70 value 76.169208
iter 80 value 75.999878
iter 90 value 75.836354
iter 100 value 75.812665
final value 75.812665
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 113.433196
iter 10 value 94.617794
iter 20 value 83.264682
iter 30 value 81.118404
iter 40 value 78.548658
iter 50 value 78.300068
iter 60 value 77.644585
iter 70 value 77.352320
iter 80 value 76.756233
iter 90 value 76.592821
iter 100 value 76.241143
final value 76.241143
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 125.919158
iter 10 value 94.133555
iter 20 value 86.975111
iter 30 value 85.722227
iter 40 value 84.133483
iter 50 value 81.129708
iter 60 value 80.105261
iter 70 value 79.075008
iter 80 value 78.419230
iter 90 value 77.513846
iter 100 value 77.296388
final value 77.296388
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 100.555025
iter 10 value 94.609112
iter 20 value 93.716133
iter 30 value 82.050767
iter 40 value 80.253506
iter 50 value 78.478266
iter 60 value 77.731908
iter 70 value 76.234833
iter 80 value 76.002050
iter 90 value 75.937916
iter 100 value 75.745232
final value 75.745232
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 104.924381
iter 10 value 94.488900
iter 20 value 93.909007
iter 30 value 90.947796
iter 40 value 89.032440
iter 50 value 87.236825
iter 60 value 87.148961
iter 70 value 84.366916
iter 80 value 77.430572
iter 90 value 76.722543
iter 100 value 76.156363
final value 76.156363
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 108.372145
iter 10 value 93.876362
iter 20 value 89.264454
iter 30 value 83.749526
iter 40 value 78.954431
iter 50 value 77.724538
iter 60 value 77.243130
iter 70 value 77.058897
iter 80 value 76.945989
iter 90 value 76.926085
iter 100 value 76.884697
final value 76.884697
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 150.395160
iter 10 value 94.477831
iter 20 value 87.111091
iter 30 value 82.451266
iter 40 value 81.272096
iter 50 value 80.899799
iter 60 value 79.774931
iter 70 value 78.798799
iter 80 value 78.493405
iter 90 value 77.384656
iter 100 value 76.328658
final value 76.328658
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 120.278177
iter 10 value 94.632153
iter 20 value 91.999551
iter 30 value 89.410631
iter 40 value 86.905859
iter 50 value 83.951337
iter 60 value 80.590066
iter 70 value 79.660251
iter 80 value 77.765206
iter 90 value 77.047165
iter 100 value 76.983740
final value 76.983740
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 127.780957
iter 10 value 91.659915
iter 20 value 88.015252
iter 30 value 80.031927
iter 40 value 79.016476
iter 50 value 78.042678
iter 60 value 77.017017
iter 70 value 76.686586
iter 80 value 76.519701
iter 90 value 76.326213
iter 100 value 76.185339
final value 76.185339
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 107.465359
iter 10 value 94.637190
iter 20 value 93.957160
iter 30 value 83.515389
iter 40 value 82.360454
iter 50 value 79.532372
iter 60 value 78.719738
iter 70 value 77.705428
iter 80 value 76.480753
iter 90 value 76.034414
iter 100 value 75.952550
final value 75.952550
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 96.066956
iter 10 value 94.485596
iter 20 value 94.484224
final value 94.484221
converged
Fitting Repeat 2
# weights: 103
initial value 104.462137
final value 94.486051
converged
Fitting Repeat 3
# weights: 103
initial value 98.406591
iter 10 value 90.933442
iter 20 value 90.924585
final value 90.924088
converged
Fitting Repeat 4
# weights: 103
initial value 96.056873
final value 94.485892
converged
Fitting Repeat 5
# weights: 103
initial value 94.704193
iter 10 value 90.148833
iter 20 value 89.984610
iter 30 value 89.983891
iter 40 value 89.954663
iter 50 value 89.953702
iter 60 value 89.953085
final value 89.952860
converged
Fitting Repeat 1
# weights: 305
initial value 105.235598
iter 10 value 94.317238
iter 20 value 94.308776
final value 94.308501
converged
Fitting Repeat 2
# weights: 305
initial value 115.991623
iter 10 value 94.489237
iter 20 value 94.484460
iter 30 value 88.714318
iter 40 value 81.882223
iter 50 value 81.017865
final value 81.017457
converged
Fitting Repeat 3
# weights: 305
initial value 109.151750
iter 10 value 94.359392
iter 20 value 89.909979
iter 30 value 89.361640
iter 40 value 89.185412
iter 50 value 88.354928
iter 60 value 88.301484
iter 70 value 88.300273
iter 80 value 88.299919
iter 90 value 88.298615
iter 100 value 88.297954
final value 88.297954
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 100.225193
iter 10 value 94.359063
iter 20 value 91.872486
iter 30 value 82.102807
iter 40 value 81.466201
iter 50 value 77.912756
iter 60 value 75.844548
iter 70 value 75.824871
final value 75.824704
converged
Fitting Repeat 5
# weights: 305
initial value 104.095723
iter 10 value 90.933562
iter 20 value 90.925525
iter 30 value 90.923047
iter 40 value 90.921197
iter 50 value 88.009085
iter 60 value 87.507251
iter 70 value 85.250930
iter 80 value 84.654655
iter 90 value 84.654284
iter 90 value 84.654283
iter 90 value 84.654283
final value 84.654283
converged
Fitting Repeat 1
# weights: 507
initial value 97.704472
iter 10 value 90.938091
iter 20 value 90.927147
iter 30 value 90.283590
iter 40 value 85.442256
iter 50 value 84.803921
iter 60 value 84.589276
iter 70 value 75.597186
iter 80 value 75.301921
iter 90 value 75.103994
iter 100 value 75.052153
final value 75.052153
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 102.210853
iter 10 value 87.211086
iter 20 value 85.015032
iter 30 value 84.959882
iter 40 value 82.239194
iter 50 value 78.313031
iter 60 value 76.830949
iter 70 value 76.828481
final value 76.828310
converged
Fitting Repeat 3
# weights: 507
initial value 97.383146
iter 10 value 90.932334
iter 20 value 90.929728
iter 30 value 90.921974
iter 40 value 86.303871
iter 50 value 79.854842
iter 60 value 79.597684
iter 70 value 79.569700
iter 80 value 79.568333
final value 79.566282
converged
Fitting Repeat 4
# weights: 507
initial value 99.896335
iter 10 value 94.362536
iter 20 value 94.356711
iter 30 value 94.310100
iter 40 value 94.309115
final value 94.309094
converged
Fitting Repeat 5
# weights: 507
initial value 99.746710
iter 10 value 94.492961
iter 20 value 94.484262
iter 30 value 92.849689
iter 40 value 92.297399
iter 50 value 92.296458
iter 60 value 92.296165
iter 70 value 92.273078
iter 80 value 92.272136
iter 80 value 92.272136
final value 92.272136
converged
Fitting Repeat 1
# weights: 103
initial value 102.211567
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 97.084944
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 99.973759
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 102.022022
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 96.175162
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 98.744124
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 97.932666
iter 10 value 86.101454
iter 20 value 85.673271
iter 30 value 85.665780
iter 40 value 85.117108
final value 85.103437
converged
Fitting Repeat 3
# weights: 305
initial value 99.380097
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 99.435210
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 102.756482
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 105.145622
final value 94.466823
converged
Fitting Repeat 2
# weights: 507
initial value 101.462275
final value 94.484211
converged
Fitting Repeat 3
# weights: 507
initial value 116.969969
final value 94.484211
converged
Fitting Repeat 4
# weights: 507
initial value 104.163914
final value 94.484211
converged
Fitting Repeat 5
# weights: 507
initial value 102.985991
iter 10 value 92.128827
iter 20 value 84.734526
iter 30 value 84.710185
final value 84.710063
converged
Fitting Repeat 1
# weights: 103
initial value 98.332696
iter 10 value 94.226621
iter 20 value 88.658648
iter 30 value 88.590855
iter 40 value 86.737557
iter 50 value 85.851434
iter 60 value 85.796617
iter 70 value 85.776115
iter 80 value 85.769303
iter 80 value 85.769303
iter 80 value 85.769303
final value 85.769303
converged
Fitting Repeat 2
# weights: 103
initial value 106.689869
iter 10 value 94.487434
iter 20 value 87.719201
iter 30 value 87.065415
iter 40 value 86.151395
iter 50 value 85.573249
iter 60 value 85.123682
iter 70 value 84.938830
iter 80 value 84.919346
final value 84.919344
converged
Fitting Repeat 3
# weights: 103
initial value 97.032215
iter 10 value 94.453083
iter 20 value 93.862942
iter 30 value 87.418667
iter 40 value 85.580763
iter 50 value 85.174907
iter 60 value 84.883304
iter 70 value 84.780826
final value 84.780678
converged
Fitting Repeat 4
# weights: 103
initial value 101.364443
iter 10 value 94.498435
iter 20 value 94.436070
iter 30 value 93.208775
iter 40 value 92.770300
iter 50 value 87.670339
iter 60 value 86.467660
iter 70 value 85.966939
iter 80 value 85.278287
iter 90 value 84.201006
iter 100 value 84.062155
final value 84.062155
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 104.541651
iter 10 value 93.927281
iter 20 value 87.036420
iter 30 value 86.277462
iter 40 value 85.560063
iter 50 value 84.957095
iter 60 value 84.889018
final value 84.888164
converged
Fitting Repeat 1
# weights: 305
initial value 109.046394
iter 10 value 95.363358
iter 20 value 92.361446
iter 30 value 91.866700
iter 40 value 87.444777
iter 50 value 85.135659
iter 60 value 84.964233
iter 70 value 84.121459
iter 80 value 83.128378
iter 90 value 83.061687
iter 100 value 82.778507
final value 82.778507
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 103.485834
iter 10 value 95.330702
iter 20 value 94.687501
iter 30 value 93.805949
iter 40 value 92.460690
iter 50 value 90.690596
iter 60 value 90.641136
iter 70 value 90.111332
iter 80 value 86.512026
iter 90 value 83.850188
iter 100 value 82.696698
final value 82.696698
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 106.784708
iter 10 value 96.244952
iter 20 value 90.724837
iter 30 value 90.419307
iter 40 value 88.629257
iter 50 value 87.423480
iter 60 value 85.610987
iter 70 value 84.505806
iter 80 value 83.697214
iter 90 value 83.357642
iter 100 value 83.245894
final value 83.245894
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 124.285102
iter 10 value 94.367173
iter 20 value 90.590437
iter 30 value 86.264227
iter 40 value 85.935692
iter 50 value 85.664612
iter 60 value 85.443401
iter 70 value 84.463198
iter 80 value 83.009488
iter 90 value 82.896387
iter 100 value 82.762668
final value 82.762668
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 107.724383
iter 10 value 92.220169
iter 20 value 90.635444
iter 30 value 88.464337
iter 40 value 85.059538
iter 50 value 84.500539
iter 60 value 84.223970
iter 70 value 83.830973
iter 80 value 83.567959
iter 90 value 83.433411
iter 100 value 83.051093
final value 83.051093
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 118.675036
iter 10 value 94.423014
iter 20 value 91.856589
iter 30 value 90.385421
iter 40 value 85.912726
iter 50 value 85.424854
iter 60 value 84.476255
iter 70 value 84.025665
iter 80 value 83.312233
iter 90 value 83.227577
iter 100 value 83.116420
final value 83.116420
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 112.053488
iter 10 value 92.166358
iter 20 value 88.805344
iter 30 value 86.994757
iter 40 value 85.184278
iter 50 value 83.813867
iter 60 value 83.422959
iter 70 value 82.898517
iter 80 value 82.700790
iter 90 value 82.564859
iter 100 value 82.462151
final value 82.462151
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 118.365987
iter 10 value 93.922783
iter 20 value 87.775965
iter 30 value 87.465517
iter 40 value 86.384256
iter 50 value 83.952201
iter 60 value 83.028581
iter 70 value 82.673028
iter 80 value 82.585684
iter 90 value 82.463755
iter 100 value 82.152620
final value 82.152620
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 113.728334
iter 10 value 94.511040
iter 20 value 94.362989
iter 30 value 90.394174
iter 40 value 88.471374
iter 50 value 87.016448
iter 60 value 83.825274
iter 70 value 83.090195
iter 80 value 82.557351
iter 90 value 82.164886
iter 100 value 82.155156
final value 82.155156
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 117.433933
iter 10 value 94.383871
iter 20 value 86.280174
iter 30 value 85.363194
iter 40 value 84.664132
iter 50 value 83.880048
iter 60 value 83.196846
iter 70 value 82.681007
iter 80 value 82.384597
iter 90 value 82.115060
iter 100 value 82.023367
final value 82.023367
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 105.129241
iter 10 value 94.485889
iter 20 value 94.484295
iter 30 value 94.457226
iter 40 value 92.451831
iter 50 value 87.332110
iter 60 value 87.277733
iter 70 value 87.249972
iter 80 value 87.249560
iter 90 value 87.206726
iter 100 value 87.200086
final value 87.200086
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 98.498516
final value 94.485824
converged
Fitting Repeat 3
# weights: 103
initial value 95.461846
final value 94.485976
converged
Fitting Repeat 4
# weights: 103
initial value 96.176494
final value 94.485765
converged
Fitting Repeat 5
# weights: 103
initial value 98.035151
final value 94.486010
converged
Fitting Repeat 1
# weights: 305
initial value 103.364136
iter 10 value 94.488883
iter 20 value 94.484343
iter 30 value 87.116851
iter 40 value 85.264590
final value 85.252793
converged
Fitting Repeat 2
# weights: 305
initial value 96.936561
iter 10 value 94.490881
iter 20 value 94.484954
iter 30 value 88.732873
iter 40 value 85.849290
iter 50 value 85.845120
iter 60 value 85.373757
iter 70 value 85.359089
iter 80 value 85.358517
iter 90 value 85.357321
final value 85.356827
converged
Fitting Repeat 3
# weights: 305
initial value 96.159358
iter 10 value 94.488516
iter 20 value 92.427660
iter 30 value 91.470303
iter 40 value 91.468876
final value 91.468510
converged
Fitting Repeat 4
# weights: 305
initial value 99.359733
iter 10 value 89.571043
iter 20 value 88.590100
iter 30 value 88.588548
iter 40 value 88.002191
iter 50 value 87.966440
iter 60 value 87.965711
iter 70 value 87.964476
iter 80 value 87.964387
iter 90 value 87.964164
iter 100 value 87.963941
final value 87.963941
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 101.809146
iter 10 value 94.488939
iter 20 value 94.329356
iter 30 value 93.733673
iter 40 value 93.721154
iter 50 value 91.849425
iter 60 value 91.830423
iter 60 value 91.830422
final value 91.830420
converged
Fitting Repeat 1
# weights: 507
initial value 95.909395
iter 10 value 89.664206
iter 20 value 86.281602
iter 30 value 85.656651
iter 40 value 85.590307
iter 50 value 85.499465
iter 60 value 85.498285
iter 70 value 84.088276
iter 80 value 83.933412
iter 90 value 83.904288
iter 100 value 83.881010
final value 83.881010
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 105.832928
iter 10 value 91.167007
iter 20 value 91.146922
iter 30 value 91.136160
iter 40 value 90.845843
iter 50 value 84.115137
iter 60 value 83.527644
iter 70 value 83.517406
iter 80 value 83.515495
iter 90 value 83.382760
iter 100 value 82.852095
final value 82.852095
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 106.064661
iter 10 value 94.475027
iter 20 value 91.751471
iter 30 value 85.329878
iter 40 value 85.126822
iter 50 value 84.755217
iter 60 value 83.749913
iter 70 value 83.403578
iter 80 value 83.377154
iter 90 value 83.376951
final value 83.376889
converged
Fitting Repeat 4
# weights: 507
initial value 101.424906
iter 10 value 94.475434
iter 20 value 94.467960
iter 30 value 94.345341
iter 40 value 91.819009
iter 50 value 91.144989
iter 60 value 86.979536
iter 70 value 86.112998
iter 80 value 85.005996
iter 90 value 84.741095
iter 100 value 84.149454
final value 84.149454
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 106.438755
iter 10 value 94.492464
iter 20 value 93.236899
iter 30 value 86.367664
iter 40 value 86.327204
final value 86.326894
converged
Fitting Repeat 1
# weights: 305
initial value 130.349040
iter 10 value 117.832985
iter 20 value 109.721133
iter 30 value 107.805195
iter 40 value 104.245035
iter 50 value 102.056254
iter 60 value 101.789766
iter 70 value 101.640675
iter 80 value 101.390586
iter 90 value 101.135452
iter 100 value 101.049142
final value 101.049142
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 127.390483
iter 10 value 115.549772
iter 20 value 106.104006
iter 30 value 105.784751
iter 40 value 104.876703
iter 50 value 103.671697
iter 60 value 103.633185
iter 70 value 103.504494
iter 80 value 102.749808
iter 90 value 101.320782
iter 100 value 101.293405
final value 101.293405
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 125.873675
iter 10 value 117.935314
iter 20 value 108.273015
iter 30 value 105.770634
iter 40 value 105.152350
iter 50 value 104.980689
iter 60 value 103.354809
iter 70 value 102.161214
iter 80 value 101.806714
iter 90 value 101.144546
iter 100 value 100.646417
final value 100.646417
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 130.932983
iter 10 value 119.453051
iter 20 value 117.689075
iter 30 value 117.623796
iter 40 value 108.081682
iter 50 value 105.882538
iter 60 value 105.451371
iter 70 value 104.895005
iter 80 value 103.234604
iter 90 value 102.659649
iter 100 value 101.772537
final value 101.772537
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 139.057617
iter 10 value 118.860025
iter 20 value 111.200233
iter 30 value 106.769519
iter 40 value 105.245249
iter 50 value 104.741734
iter 60 value 102.733302
iter 70 value 102.185322
iter 80 value 101.842854
iter 90 value 101.819188
iter 100 value 101.809242
final value 101.809242
stopped after 100 iterations
svmRadial
ranger
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
RUNIT TEST PROTOCOL -- Tue Mar 31 00:25:06 2026
***********************************************
Number of test functions: 7
Number of errors: 0
Number of failures: 0
1 Test Suite :
HPiP RUnit Tests - 7 test functions, 0 errors, 0 failures
Number of test functions: 7
Number of errors: 0
Number of failures: 0
Warning messages:
1: `repeats` has no meaning for this resampling method.
2: executing %dopar% sequentially: no parallel backend registered
>
>
>
>
> proc.time()
user system elapsed
41.006 1.052 104.005
HPiP.Rcheck/HPiP-Ex.timings
| name | user | system | elapsed | |
| FSmethod | 33.492 | 0.523 | 34.015 | |
| FreqInteractors | 0.448 | 0.029 | 0.477 | |
| calculateAAC | 0.033 | 0.000 | 0.034 | |
| calculateAutocor | 0.326 | 0.013 | 0.339 | |
| calculateCTDC | 0.089 | 0.000 | 0.089 | |
| calculateCTDD | 0.560 | 0.002 | 0.562 | |
| calculateCTDT | 0.191 | 0.007 | 0.198 | |
| calculateCTriad | 0.362 | 0.005 | 0.368 | |
| calculateDC | 0.090 | 0.001 | 0.091 | |
| calculateF | 0.338 | 0.000 | 0.337 | |
| calculateKSAAP | 0.108 | 0.001 | 0.108 | |
| calculateQD_Sm | 1.762 | 0.004 | 1.765 | |
| calculateTC | 1.472 | 0.020 | 1.491 | |
| calculateTC_Sm | 0.249 | 0.004 | 0.253 | |
| corr_plot | 34.571 | 0.462 | 35.095 | |
| enrichfindP | 0.580 | 0.037 | 10.105 | |
| enrichfind_hp | 0.058 | 0.001 | 1.975 | |
| enrichplot | 0.522 | 0.001 | 0.523 | |
| filter_missing_values | 0.001 | 0.000 | 0.001 | |
| getFASTA | 0.462 | 0.037 | 4.044 | |
| getHPI | 0.000 | 0.000 | 0.001 | |
| get_negativePPI | 0.003 | 0.000 | 0.002 | |
| get_positivePPI | 0 | 0 | 0 | |
| impute_missing_data | 0.002 | 0.001 | 0.002 | |
| plotPPI | 0.099 | 0.002 | 0.101 | |
| pred_ensembel | 13.335 | 0.282 | 12.276 | |
| var_imp | 33.863 | 0.678 | 34.564 | |