| Back to Build/check report for BioC 3.22: simplified long |
|
This page was generated on 2026-04-01 11:57 -0400 (Wed, 01 Apr 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4896 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1006/2361 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HPiP 1.16.1 (landing page) Matineh Rahmatbakhsh
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
| See other builds for HPiP in R Universe. | ||||||||||||||
|
To the developers/maintainers of the HPiP package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPiP.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: HPiP |
| Version: 1.16.1 |
| Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings HPiP_1.16.1.tar.gz |
| StartedAt: 2026-04-01 00:25:07 -0400 (Wed, 01 Apr 2026) |
| EndedAt: 2026-04-01 00:40:08 -0400 (Wed, 01 Apr 2026) |
| EllapsedTime: 900.9 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: HPiP.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings HPiP_1.16.1.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.22-bioc/meat/HPiP.Rcheck’
* using R version 4.5.2 (2025-10-31)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.4 LTS
* using session charset: UTF-8
* checking for file ‘HPiP/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HPiP’ version ‘1.16.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HPiP’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License stub is invalid DCF.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) getHPI.Rd:29: Lost braces
29 | then the Kronecker product is the code{(pm × qn)} block matrix
| ^
* checking Rd metadata ... OK
* checking Rd cross-references ... INFO
Package unavailable to check Rd xrefs: ‘ftrCOOL’
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
corr_plot 33.806 0.516 34.322
var_imp 33.125 0.451 33.575
FSmethod 32.819 0.421 33.241
pred_ensembel 12.731 0.090 11.508
enrichfindP 0.608 0.037 13.260
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/home/biocbuild/bbs-3.22-bioc/meat/HPiP.Rcheck/00check.log’
for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.22-bioc/R/site-library’ * installing *source* package ‘HPiP’ ... ** this is package ‘HPiP’ version ‘1.16.1’ ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage('HPiP')
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
avNNet
Loading required package: ggplot2
Loading required package: lattice
Fitting Repeat 1
# weights: 103
initial value 104.215839
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 100.203892
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 115.938825
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 96.588226
iter 10 value 93.286816
iter 20 value 93.286561
final value 93.286556
converged
Fitting Repeat 5
# weights: 103
initial value 96.580230
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 122.843997
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 97.751271
final value 94.354396
converged
Fitting Repeat 3
# weights: 305
initial value 112.353932
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 108.394534
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 102.030793
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 101.904898
iter 10 value 94.543241
iter 20 value 94.324036
iter 30 value 92.589489
iter 40 value 90.775462
iter 50 value 87.851982
iter 60 value 85.461485
iter 70 value 85.455062
iter 70 value 85.455061
iter 70 value 85.455061
final value 85.455061
converged
Fitting Repeat 2
# weights: 507
initial value 134.014934
final value 94.484211
converged
Fitting Repeat 3
# weights: 507
initial value 105.325845
iter 10 value 94.354396
iter 10 value 94.354396
iter 10 value 94.354396
final value 94.354396
converged
Fitting Repeat 4
# weights: 507
initial value 97.880323
iter 10 value 91.172692
iter 20 value 91.017772
iter 30 value 91.017327
final value 91.017312
converged
Fitting Repeat 5
# weights: 507
initial value 107.280682
final value 94.096667
converged
Fitting Repeat 1
# weights: 103
initial value 99.726543
iter 10 value 94.687892
iter 20 value 94.391724
iter 30 value 94.382224
iter 40 value 94.330664
iter 50 value 92.349990
iter 60 value 89.339069
iter 70 value 88.652720
iter 80 value 87.017325
iter 90 value 86.064407
iter 100 value 85.401250
final value 85.401250
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 101.955169
iter 10 value 94.702578
iter 20 value 94.487246
iter 30 value 86.567484
iter 40 value 85.387011
iter 50 value 85.191694
iter 60 value 84.957774
iter 70 value 84.419764
iter 80 value 84.078790
iter 90 value 84.054209
final value 84.054060
converged
Fitting Repeat 3
# weights: 103
initial value 112.175031
iter 10 value 94.404584
iter 20 value 89.859474
iter 30 value 89.617703
iter 40 value 89.149582
iter 50 value 88.917692
iter 60 value 86.683186
iter 70 value 86.216438
iter 80 value 86.178568
iter 90 value 86.176806
final value 86.176777
converged
Fitting Repeat 4
# weights: 103
initial value 100.068367
iter 10 value 95.202414
iter 20 value 94.489147
iter 30 value 94.446501
iter 40 value 94.417327
iter 50 value 94.412822
iter 60 value 94.411665
iter 70 value 94.411604
iter 80 value 89.837004
iter 90 value 85.896691
iter 100 value 85.786638
final value 85.786638
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 112.857142
iter 10 value 94.480017
iter 20 value 92.757846
iter 30 value 92.172518
iter 40 value 90.368808
iter 50 value 86.033509
iter 60 value 85.509755
iter 70 value 85.127648
iter 80 value 84.871355
iter 90 value 84.844629
iter 100 value 84.373031
final value 84.373031
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 99.684987
iter 10 value 90.756577
iter 20 value 86.490673
iter 30 value 83.893362
iter 40 value 83.766340
iter 50 value 83.310463
iter 60 value 83.138034
iter 70 value 82.835312
iter 80 value 82.727650
iter 90 value 82.668106
iter 100 value 82.603298
final value 82.603298
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 108.088943
iter 10 value 94.453811
iter 20 value 93.009087
iter 30 value 87.563416
iter 40 value 84.619143
iter 50 value 84.381302
iter 60 value 84.072077
iter 70 value 83.967382
iter 80 value 83.950294
iter 90 value 83.923938
iter 100 value 83.642255
final value 83.642255
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 105.251810
iter 10 value 94.385959
iter 20 value 94.359584
iter 30 value 88.047926
iter 40 value 85.724025
iter 50 value 84.335714
iter 60 value 83.492608
iter 70 value 83.128920
iter 80 value 82.836648
iter 90 value 82.781358
iter 100 value 82.764674
final value 82.764674
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 111.402570
iter 10 value 95.327812
iter 20 value 90.337283
iter 30 value 89.561353
iter 40 value 88.923082
iter 50 value 88.772036
iter 60 value 87.498146
iter 70 value 85.768872
iter 80 value 84.777708
iter 90 value 84.368767
iter 100 value 84.203054
final value 84.203054
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 111.617652
iter 10 value 94.341051
iter 20 value 86.996699
iter 30 value 85.067200
iter 40 value 83.923536
iter 50 value 83.320201
iter 60 value 83.089186
iter 70 value 82.966760
iter 80 value 82.859010
iter 90 value 82.785078
iter 100 value 82.754488
final value 82.754488
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 106.442681
iter 10 value 93.919718
iter 20 value 91.744932
iter 30 value 87.244845
iter 40 value 86.525704
iter 50 value 84.178203
iter 60 value 83.857713
iter 70 value 83.549754
iter 80 value 82.956808
iter 90 value 82.833358
iter 100 value 82.811012
final value 82.811012
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 106.649832
iter 10 value 94.611529
iter 20 value 89.631173
iter 30 value 86.033937
iter 40 value 85.117148
iter 50 value 84.948528
iter 60 value 84.062254
iter 70 value 83.365742
iter 80 value 83.183745
iter 90 value 82.984006
iter 100 value 82.840435
final value 82.840435
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 116.278741
iter 10 value 95.657015
iter 20 value 92.360616
iter 30 value 88.959004
iter 40 value 87.255016
iter 50 value 86.913397
iter 60 value 85.357468
iter 70 value 84.096148
iter 80 value 83.845704
iter 90 value 83.585456
iter 100 value 83.202950
final value 83.202950
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 120.365859
iter 10 value 94.593995
iter 20 value 94.490018
iter 30 value 92.953358
iter 40 value 91.808683
iter 50 value 91.667737
iter 60 value 87.273872
iter 70 value 85.807283
iter 80 value 85.535594
iter 90 value 84.829016
iter 100 value 83.316228
final value 83.316228
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 113.171564
iter 10 value 94.476149
iter 20 value 92.946796
iter 30 value 91.046753
iter 40 value 89.776623
iter 50 value 89.206488
iter 60 value 88.284845
iter 70 value 85.332704
iter 80 value 84.134584
iter 90 value 83.746196
iter 100 value 83.364853
final value 83.364853
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 98.630654
iter 10 value 94.485941
iter 20 value 90.495814
iter 30 value 87.871918
iter 40 value 86.520582
final value 86.520555
converged
Fitting Repeat 2
# weights: 103
initial value 100.654628
final value 94.485772
converged
Fitting Repeat 3
# weights: 103
initial value 107.363995
final value 94.486238
converged
Fitting Repeat 4
# weights: 103
initial value 104.194341
final value 94.486016
converged
Fitting Repeat 5
# weights: 103
initial value 97.466453
final value 94.485906
converged
Fitting Repeat 1
# weights: 305
initial value 107.122452
iter 10 value 94.488617
iter 20 value 93.650896
iter 30 value 93.483486
final value 93.483145
converged
Fitting Repeat 2
# weights: 305
initial value 123.767209
iter 10 value 94.488853
iter 20 value 94.384867
iter 30 value 93.471155
iter 40 value 93.085804
iter 50 value 92.980263
iter 60 value 92.482286
iter 70 value 86.743731
final value 86.743535
converged
Fitting Repeat 3
# weights: 305
initial value 102.598143
iter 10 value 94.150747
iter 20 value 89.038018
iter 30 value 89.022354
iter 40 value 88.649801
iter 50 value 85.395801
iter 60 value 85.292376
iter 70 value 84.445833
iter 80 value 83.449074
iter 90 value 82.694905
iter 100 value 82.603869
final value 82.603869
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 113.547888
iter 10 value 94.093591
iter 20 value 93.747625
final value 91.886225
converged
Fitting Repeat 5
# weights: 305
initial value 100.959762
iter 10 value 94.433845
iter 20 value 94.357369
iter 30 value 94.357185
iter 40 value 94.355995
iter 50 value 94.354833
iter 60 value 94.267147
iter 70 value 89.878483
iter 80 value 89.118540
final value 89.118530
converged
Fitting Repeat 1
# weights: 507
initial value 113.404184
iter 10 value 91.250330
iter 20 value 89.320757
iter 30 value 89.222396
iter 40 value 89.146964
iter 50 value 89.146617
iter 60 value 88.885660
iter 70 value 87.215291
iter 80 value 86.562271
final value 86.473370
converged
Fitting Repeat 2
# weights: 507
initial value 111.426571
iter 10 value 94.362977
iter 20 value 94.354859
iter 30 value 88.037663
iter 40 value 86.626241
iter 50 value 83.874287
iter 60 value 82.792481
iter 70 value 82.660779
iter 80 value 82.639318
final value 82.639189
converged
Fitting Repeat 3
# weights: 507
initial value 102.939411
iter 10 value 94.437147
iter 20 value 94.362233
final value 94.362229
converged
Fitting Repeat 4
# weights: 507
initial value 101.723891
iter 10 value 94.097066
iter 20 value 92.008277
iter 30 value 87.929453
iter 40 value 87.789332
iter 50 value 86.026853
iter 60 value 86.001374
iter 70 value 86.000383
final value 85.999875
converged
Fitting Repeat 5
# weights: 507
initial value 95.171658
iter 10 value 93.988461
iter 20 value 93.983271
iter 30 value 85.835302
iter 40 value 85.458726
iter 50 value 84.994898
iter 60 value 84.189337
iter 70 value 84.112296
iter 80 value 83.933821
final value 83.933709
converged
Fitting Repeat 1
# weights: 103
initial value 104.164226
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 102.014861
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 106.750755
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 99.054847
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 103.935589
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 105.270310
iter 10 value 93.673277
iter 20 value 93.672973
iter 20 value 93.672973
iter 20 value 93.672973
final value 93.672973
converged
Fitting Repeat 2
# weights: 305
initial value 97.070277
iter 10 value 84.019801
iter 20 value 83.575975
final value 83.546560
converged
Fitting Repeat 3
# weights: 305
initial value 107.664198
iter 10 value 94.044450
final value 94.044444
converged
Fitting Repeat 4
# weights: 305
initial value 111.454757
iter 10 value 93.836061
iter 10 value 93.836061
final value 93.836061
converged
Fitting Repeat 5
# weights: 305
initial value 105.734583
iter 10 value 94.052914
iter 10 value 94.052914
iter 10 value 94.052914
final value 94.052914
converged
Fitting Repeat 1
# weights: 507
initial value 98.605028
iter 10 value 93.734703
iter 10 value 93.734703
iter 10 value 93.734703
final value 93.734703
converged
Fitting Repeat 2
# weights: 507
initial value 124.864581
final value 94.052910
converged
Fitting Repeat 3
# weights: 507
initial value 106.852521
final value 94.052910
converged
Fitting Repeat 4
# weights: 507
initial value 108.729141
final value 94.052910
converged
Fitting Repeat 5
# weights: 507
initial value 107.276581
iter 10 value 93.836066
iter 10 value 93.836066
iter 10 value 93.836066
final value 93.836066
converged
Fitting Repeat 1
# weights: 103
initial value 121.385786
iter 10 value 93.900203
iter 20 value 89.910841
iter 30 value 89.615675
iter 40 value 84.542757
iter 50 value 83.543203
iter 60 value 83.481569
iter 70 value 83.481035
final value 83.481024
converged
Fitting Repeat 2
# weights: 103
initial value 97.895369
iter 10 value 94.032875
iter 20 value 86.579622
iter 30 value 84.527643
iter 40 value 83.729058
iter 50 value 83.660562
iter 60 value 83.484277
final value 83.481024
converged
Fitting Repeat 3
# weights: 103
initial value 107.993882
iter 10 value 94.055173
iter 20 value 94.012402
iter 30 value 91.472735
iter 40 value 86.138697
iter 50 value 81.949540
iter 60 value 80.654034
iter 70 value 79.930263
iter 80 value 79.877036
final value 79.877026
converged
Fitting Repeat 4
# weights: 103
initial value 98.398252
iter 10 value 94.057999
iter 20 value 93.949097
iter 30 value 90.754639
iter 40 value 87.157202
iter 50 value 84.984613
iter 60 value 84.084786
iter 70 value 83.813047
iter 80 value 83.575985
iter 90 value 83.537509
iter 100 value 83.492607
final value 83.492607
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 105.647927
iter 10 value 94.056958
iter 20 value 93.463376
iter 30 value 86.748011
iter 40 value 82.682290
iter 50 value 81.380965
iter 60 value 80.936136
iter 70 value 80.829095
final value 80.798125
converged
Fitting Repeat 1
# weights: 305
initial value 109.051310
iter 10 value 94.207121
iter 20 value 94.069985
iter 30 value 93.001798
iter 40 value 87.954424
iter 50 value 84.243382
iter 60 value 83.421437
iter 70 value 81.192040
iter 80 value 80.171441
iter 90 value 79.084538
iter 100 value 78.966984
final value 78.966984
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 102.560020
iter 10 value 94.038746
iter 20 value 92.107473
iter 30 value 88.341850
iter 40 value 84.438567
iter 50 value 83.154973
iter 60 value 81.117757
iter 70 value 80.592579
iter 80 value 79.489997
iter 90 value 79.244148
iter 100 value 79.152175
final value 79.152175
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 104.421981
iter 10 value 94.101372
iter 20 value 92.781522
iter 30 value 88.696596
iter 40 value 81.612851
iter 50 value 80.448108
iter 60 value 79.482457
iter 70 value 78.933312
iter 80 value 78.688190
iter 90 value 78.324904
iter 100 value 78.304328
final value 78.304328
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 99.342076
iter 10 value 93.396281
iter 20 value 88.268201
iter 30 value 85.881603
iter 40 value 82.694679
iter 50 value 79.462050
iter 60 value 79.220970
iter 70 value 78.881776
iter 80 value 78.765101
iter 90 value 78.715226
iter 100 value 78.697831
final value 78.697831
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 103.980542
iter 10 value 93.838248
iter 20 value 86.326561
iter 30 value 84.464362
iter 40 value 83.091146
iter 50 value 82.832541
iter 60 value 81.154713
iter 70 value 78.934704
iter 80 value 78.476218
iter 90 value 78.410134
iter 100 value 78.299578
final value 78.299578
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 111.489491
iter 10 value 94.132216
iter 20 value 92.385609
iter 30 value 84.023301
iter 40 value 80.537973
iter 50 value 79.738704
iter 60 value 78.828172
iter 70 value 78.562210
iter 80 value 78.409518
iter 90 value 78.387910
iter 100 value 78.375836
final value 78.375836
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 108.666841
iter 10 value 93.860201
iter 20 value 86.717148
iter 30 value 83.490295
iter 40 value 79.899943
iter 50 value 79.435083
iter 60 value 79.229880
iter 70 value 78.792172
iter 80 value 78.529181
iter 90 value 78.187416
iter 100 value 77.837516
final value 77.837516
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 130.871916
iter 10 value 94.011878
iter 20 value 92.710364
iter 30 value 90.748292
iter 40 value 87.750071
iter 50 value 86.945400
iter 60 value 84.571823
iter 70 value 82.518885
iter 80 value 79.817690
iter 90 value 79.095418
iter 100 value 78.596648
final value 78.596648
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 112.507157
iter 10 value 94.038231
iter 20 value 93.360215
iter 30 value 91.417336
iter 40 value 87.903852
iter 50 value 83.007819
iter 60 value 81.691314
iter 70 value 81.267640
iter 80 value 79.866574
iter 90 value 79.397684
iter 100 value 79.235079
final value 79.235079
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 110.916012
iter 10 value 94.212479
iter 20 value 93.028954
iter 30 value 87.908570
iter 40 value 85.714314
iter 50 value 81.859821
iter 60 value 81.430091
iter 70 value 81.052255
iter 80 value 79.926715
iter 90 value 78.618092
iter 100 value 78.406480
final value 78.406480
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 102.272584
final value 94.054710
converged
Fitting Repeat 2
# weights: 103
initial value 102.097648
final value 94.054452
converged
Fitting Repeat 3
# weights: 103
initial value 96.855964
iter 10 value 93.837836
iter 20 value 93.836803
final value 93.836229
converged
Fitting Repeat 4
# weights: 103
initial value 99.580343
iter 10 value 94.054665
iter 20 value 94.052835
iter 30 value 87.678985
final value 85.855665
converged
Fitting Repeat 5
# weights: 103
initial value 96.618853
iter 10 value 89.729390
iter 20 value 89.302595
iter 30 value 89.297531
iter 40 value 85.909384
iter 50 value 85.907182
iter 60 value 85.906429
iter 70 value 85.136622
iter 80 value 84.611530
iter 90 value 84.608999
final value 84.608700
converged
Fitting Repeat 1
# weights: 305
initial value 119.855339
iter 10 value 94.057462
iter 20 value 94.009307
iter 30 value 93.484502
iter 40 value 83.770262
iter 50 value 83.401474
iter 60 value 82.084448
iter 70 value 80.035642
iter 80 value 79.731593
iter 90 value 79.700848
final value 79.697647
converged
Fitting Repeat 2
# weights: 305
initial value 96.378770
iter 10 value 94.058002
iter 20 value 94.017804
final value 93.837248
converged
Fitting Repeat 3
# weights: 305
initial value 101.794824
iter 10 value 94.057319
iter 20 value 89.123010
iter 30 value 86.392089
iter 40 value 86.290816
iter 50 value 86.271670
iter 60 value 85.932429
final value 85.932213
converged
Fitting Repeat 4
# weights: 305
initial value 118.257912
iter 10 value 94.058642
iter 20 value 93.929078
final value 93.837000
converged
Fitting Repeat 5
# weights: 305
initial value 106.432859
iter 10 value 93.841132
iter 20 value 93.838200
final value 93.837428
converged
Fitting Repeat 1
# weights: 507
initial value 116.609996
iter 10 value 93.845701
iter 20 value 93.813075
iter 30 value 90.237753
iter 40 value 89.242154
iter 50 value 88.627235
iter 60 value 88.379832
iter 70 value 88.124120
iter 80 value 88.099320
iter 90 value 88.099271
final value 88.099232
converged
Fitting Repeat 2
# weights: 507
initial value 99.978229
iter 10 value 93.481940
iter 20 value 93.456132
iter 30 value 92.369803
iter 40 value 84.699228
iter 50 value 82.338001
iter 60 value 80.504221
iter 70 value 80.503311
final value 80.503192
converged
Fitting Repeat 3
# weights: 507
initial value 97.701565
iter 10 value 94.053207
iter 20 value 93.883657
iter 30 value 89.626787
iter 40 value 88.648158
final value 88.562551
converged
Fitting Repeat 4
# weights: 507
initial value 109.697345
iter 10 value 93.812932
iter 20 value 93.475702
iter 30 value 93.448437
final value 93.439574
converged
Fitting Repeat 5
# weights: 507
initial value 106.326252
iter 10 value 93.843710
iter 20 value 93.843026
iter 30 value 93.833764
iter 40 value 92.731136
iter 50 value 85.296687
iter 60 value 85.290084
final value 85.290074
converged
Fitting Repeat 1
# weights: 103
initial value 98.738067
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 95.111490
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 97.911313
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 102.680596
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 98.204757
iter 10 value 94.113141
final value 94.112903
converged
Fitting Repeat 1
# weights: 305
initial value 94.726555
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 96.743809
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 111.759861
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 109.586963
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 104.780981
iter 10 value 94.112918
final value 94.112903
converged
Fitting Repeat 1
# weights: 507
initial value 102.458315
final value 94.484211
converged
Fitting Repeat 2
# weights: 507
initial value 107.612869
final value 94.484211
converged
Fitting Repeat 3
# weights: 507
initial value 97.564070
final value 94.484211
converged
Fitting Repeat 4
# weights: 507
initial value 100.791772
iter 10 value 90.656435
iter 20 value 89.770635
iter 30 value 85.523120
iter 40 value 84.311016
iter 50 value 84.272340
final value 84.216851
converged
Fitting Repeat 5
# weights: 507
initial value 102.608707
final value 94.484211
converged
Fitting Repeat 1
# weights: 103
initial value 100.747648
iter 10 value 93.824869
iter 20 value 86.961181
iter 30 value 85.528472
iter 40 value 85.447403
iter 50 value 83.459137
iter 60 value 82.655995
iter 70 value 82.609376
final value 82.597907
converged
Fitting Repeat 2
# weights: 103
initial value 105.059502
iter 10 value 94.436267
iter 20 value 87.627268
iter 30 value 85.070447
iter 40 value 83.413946
iter 50 value 83.324166
iter 60 value 83.270813
iter 70 value 82.243568
iter 80 value 82.188536
final value 82.188383
converged
Fitting Repeat 3
# weights: 103
initial value 118.867070
iter 10 value 94.283333
iter 20 value 88.702995
iter 30 value 85.296692
iter 40 value 83.881149
iter 50 value 83.691690
iter 60 value 81.631680
iter 70 value 80.320338
iter 80 value 79.374134
iter 90 value 79.352382
iter 100 value 79.351717
final value 79.351717
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 103.348614
iter 10 value 94.451673
iter 20 value 92.688272
iter 30 value 89.133984
iter 40 value 85.971297
iter 50 value 85.748247
iter 60 value 85.340403
iter 70 value 83.775397
iter 80 value 82.614385
iter 90 value 82.598071
final value 82.597906
converged
Fitting Repeat 5
# weights: 103
initial value 101.697377
iter 10 value 94.486119
iter 20 value 92.360887
iter 30 value 89.119099
iter 40 value 88.776280
iter 50 value 86.123194
iter 60 value 82.576954
iter 70 value 82.355028
iter 80 value 82.226586
iter 90 value 79.636510
iter 100 value 79.206643
final value 79.206643
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 122.546816
iter 10 value 94.437577
iter 20 value 86.513259
iter 30 value 83.622552
iter 40 value 80.226353
iter 50 value 79.374541
iter 60 value 78.801704
iter 70 value 78.505360
iter 80 value 78.440529
iter 90 value 78.261937
iter 100 value 78.152965
final value 78.152965
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 99.349366
iter 10 value 94.507792
iter 20 value 87.292979
iter 30 value 84.530184
iter 40 value 84.153340
iter 50 value 82.929280
iter 60 value 81.810925
iter 70 value 79.782599
iter 80 value 78.923872
iter 90 value 78.773626
iter 100 value 78.494646
final value 78.494646
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 103.292385
iter 10 value 93.521986
iter 20 value 88.470760
iter 30 value 87.502523
iter 40 value 83.923757
iter 50 value 82.672795
iter 60 value 82.482177
iter 70 value 81.468409
iter 80 value 80.830308
iter 90 value 80.507198
iter 100 value 80.225530
final value 80.225530
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 102.773550
iter 10 value 94.270674
iter 20 value 93.278263
iter 30 value 92.354147
iter 40 value 86.863485
iter 50 value 80.979659
iter 60 value 79.583693
iter 70 value 79.033187
iter 80 value 78.372428
iter 90 value 78.286489
iter 100 value 78.199260
final value 78.199260
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 103.197747
iter 10 value 94.425971
iter 20 value 92.223766
iter 30 value 81.967768
iter 40 value 81.028544
iter 50 value 80.472353
iter 60 value 79.926811
iter 70 value 79.531018
iter 80 value 78.532726
iter 90 value 77.791014
iter 100 value 77.708296
final value 77.708296
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 131.125349
iter 10 value 92.245499
iter 20 value 85.962129
iter 30 value 84.800662
iter 40 value 80.731808
iter 50 value 79.584292
iter 60 value 78.902837
iter 70 value 78.448585
iter 80 value 78.160651
iter 90 value 78.100768
iter 100 value 78.015276
final value 78.015276
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 114.601457
iter 10 value 96.188446
iter 20 value 94.679225
iter 30 value 88.195105
iter 40 value 83.281930
iter 50 value 82.640255
iter 60 value 82.280098
iter 70 value 81.026308
iter 80 value 80.526350
iter 90 value 79.704079
iter 100 value 78.927173
final value 78.927173
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 110.722262
iter 10 value 96.715565
iter 20 value 94.544970
iter 30 value 91.863024
iter 40 value 90.088540
iter 50 value 82.118924
iter 60 value 80.287558
iter 70 value 78.924359
iter 80 value 78.488791
iter 90 value 78.337347
iter 100 value 78.247260
final value 78.247260
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 107.484343
iter 10 value 95.011984
iter 20 value 88.949315
iter 30 value 87.576046
iter 40 value 84.484818
iter 50 value 83.524933
iter 60 value 80.611186
iter 70 value 79.889744
iter 80 value 79.512712
iter 90 value 79.161256
iter 100 value 78.932014
final value 78.932014
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 115.364650
iter 10 value 94.155949
iter 20 value 85.532014
iter 30 value 84.356606
iter 40 value 84.208254
iter 50 value 80.476638
iter 60 value 79.332727
iter 70 value 78.966669
iter 80 value 78.791125
iter 90 value 78.395941
iter 100 value 78.046430
final value 78.046430
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 102.650409
iter 10 value 94.115031
iter 20 value 93.693065
iter 30 value 93.486968
iter 40 value 93.474845
iter 50 value 93.359977
iter 60 value 93.342241
iter 70 value 93.341140
iter 80 value 93.340993
iter 90 value 93.340834
iter 90 value 93.340834
iter 90 value 93.340834
final value 93.340834
converged
Fitting Repeat 2
# weights: 103
initial value 97.562897
final value 94.486087
converged
Fitting Repeat 3
# weights: 103
initial value 95.484193
iter 10 value 94.485874
iter 20 value 94.483716
iter 30 value 94.348707
iter 40 value 92.624142
iter 50 value 92.606156
iter 60 value 92.605906
final value 92.605894
converged
Fitting Repeat 4
# weights: 103
initial value 98.317855
final value 94.485547
converged
Fitting Repeat 5
# weights: 103
initial value 96.587522
final value 94.485963
converged
Fitting Repeat 1
# weights: 305
initial value 96.185927
iter 10 value 94.405137
iter 20 value 94.217531
iter 30 value 93.378420
iter 40 value 93.340545
final value 93.340327
converged
Fitting Repeat 2
# weights: 305
initial value 95.803415
iter 10 value 94.489031
iter 20 value 94.479224
iter 30 value 84.219344
iter 40 value 84.011670
iter 50 value 84.010418
final value 84.010411
converged
Fitting Repeat 3
# weights: 305
initial value 95.542742
iter 10 value 93.817359
iter 20 value 93.807694
iter 30 value 93.804610
iter 40 value 93.801519
final value 93.801085
converged
Fitting Repeat 4
# weights: 305
initial value 108.180516
iter 10 value 94.489341
iter 20 value 94.484645
iter 30 value 94.056687
iter 40 value 93.811704
final value 93.779034
converged
Fitting Repeat 5
# weights: 305
initial value 97.695443
iter 10 value 94.488713
iter 20 value 92.207312
iter 30 value 84.702023
iter 40 value 81.967783
iter 50 value 81.947979
final value 81.945457
converged
Fitting Repeat 1
# weights: 507
initial value 96.473927
iter 10 value 93.515255
iter 20 value 93.513897
iter 30 value 92.874962
iter 40 value 85.280346
iter 50 value 81.213741
iter 60 value 81.176087
iter 70 value 81.175622
iter 80 value 81.175067
iter 90 value 80.897188
iter 100 value 80.454366
final value 80.454366
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 109.632394
iter 10 value 86.559305
iter 20 value 84.216034
iter 30 value 84.172268
iter 40 value 83.948045
iter 50 value 82.525940
iter 60 value 82.114014
iter 70 value 82.111397
iter 80 value 82.108115
iter 90 value 78.822239
iter 100 value 78.119383
final value 78.119383
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 103.119279
iter 10 value 94.492729
iter 20 value 94.370411
iter 30 value 89.368825
iter 40 value 87.030108
iter 50 value 86.618282
iter 60 value 84.884340
iter 70 value 84.199719
iter 80 value 84.159484
iter 90 value 84.151013
iter 100 value 84.076372
final value 84.076372
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 101.943151
iter 10 value 94.491076
iter 20 value 94.479469
iter 30 value 93.877514
iter 40 value 93.386501
iter 50 value 88.585774
iter 60 value 86.296551
iter 70 value 81.499688
iter 80 value 78.050032
iter 90 value 77.769612
iter 100 value 77.769097
final value 77.769097
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 102.612495
iter 10 value 94.491981
iter 20 value 94.420625
iter 30 value 89.939851
iter 40 value 85.332882
iter 50 value 78.160483
iter 60 value 77.352483
iter 70 value 77.245737
iter 80 value 77.243783
iter 80 value 77.243783
final value 77.243783
converged
Fitting Repeat 1
# weights: 103
initial value 95.064442
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 102.046359
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 106.055095
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 97.310004
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 104.056494
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 102.519592
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 104.857807
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 117.498687
final value 94.400000
converged
Fitting Repeat 4
# weights: 305
initial value 102.935401
iter 10 value 94.336566
iter 20 value 94.306772
iter 30 value 94.304937
final value 94.304908
converged
Fitting Repeat 5
# weights: 305
initial value 107.388434
final value 94.467391
converged
Fitting Repeat 1
# weights: 507
initial value 102.860944
final value 93.701657
converged
Fitting Repeat 2
# weights: 507
initial value 113.015273
iter 10 value 94.480508
final value 94.467387
converged
Fitting Repeat 3
# weights: 507
initial value 100.108910
final value 94.467391
converged
Fitting Repeat 4
# weights: 507
initial value 108.008606
final value 94.484211
converged
Fitting Repeat 5
# weights: 507
initial value 95.098921
iter 10 value 94.484274
final value 94.484211
converged
Fitting Repeat 1
# weights: 103
initial value 98.444502
iter 10 value 94.488333
iter 20 value 87.483269
iter 30 value 85.194444
iter 40 value 84.701497
iter 50 value 84.512223
iter 60 value 84.037612
iter 70 value 83.883038
iter 80 value 83.820663
iter 90 value 83.742660
final value 83.742636
converged
Fitting Repeat 2
# weights: 103
initial value 100.667111
iter 10 value 94.494725
iter 20 value 93.665380
iter 30 value 88.931895
iter 40 value 85.304526
iter 50 value 84.448281
iter 60 value 84.233890
iter 70 value 84.141930
iter 80 value 83.887274
iter 90 value 83.785846
iter 100 value 83.742641
final value 83.742641
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 96.177839
iter 10 value 94.488597
iter 20 value 94.224377
iter 30 value 93.862601
iter 40 value 93.856780
iter 50 value 93.336245
iter 60 value 88.157202
iter 70 value 86.651463
iter 80 value 86.416547
iter 90 value 85.427205
iter 100 value 84.563085
final value 84.563085
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 104.415984
iter 10 value 93.391309
iter 20 value 87.529932
iter 30 value 85.219948
iter 40 value 84.758016
iter 50 value 84.288075
iter 60 value 84.084140
iter 70 value 83.908506
iter 80 value 83.805221
iter 90 value 83.745101
final value 83.742637
converged
Fitting Repeat 5
# weights: 103
initial value 97.798071
iter 10 value 94.488498
iter 20 value 94.397957
iter 30 value 90.204544
iter 40 value 86.277711
iter 50 value 85.306871
iter 60 value 84.136650
iter 70 value 83.475788
iter 80 value 83.311286
iter 90 value 82.553594
final value 82.438926
converged
Fitting Repeat 1
# weights: 305
initial value 106.912978
iter 10 value 96.883033
iter 20 value 95.066392
iter 30 value 91.310568
iter 40 value 86.094561
iter 50 value 84.553205
iter 60 value 84.062172
iter 70 value 82.668927
iter 80 value 82.010496
iter 90 value 81.363806
iter 100 value 80.568577
final value 80.568577
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 106.365004
iter 10 value 94.480754
iter 20 value 93.029648
iter 30 value 87.632858
iter 40 value 87.010172
iter 50 value 84.745728
iter 60 value 83.965817
iter 70 value 83.892226
iter 80 value 83.746809
iter 90 value 83.318444
iter 100 value 82.116196
final value 82.116196
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 120.244286
iter 10 value 94.524408
iter 20 value 94.140559
iter 30 value 93.834710
iter 40 value 91.573192
iter 50 value 83.324177
iter 60 value 82.341467
iter 70 value 81.270915
iter 80 value 80.972887
iter 90 value 80.560569
iter 100 value 80.496480
final value 80.496480
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 104.112083
iter 10 value 94.515847
iter 20 value 93.793670
iter 30 value 90.253621
iter 40 value 89.307071
iter 50 value 87.519366
iter 60 value 83.404297
iter 70 value 82.318021
iter 80 value 81.426298
iter 90 value 81.340043
iter 100 value 81.327691
final value 81.327691
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 110.544982
iter 10 value 94.541222
iter 20 value 85.266460
iter 30 value 84.806681
iter 40 value 84.356380
iter 50 value 83.995238
iter 60 value 83.791065
iter 70 value 83.707876
iter 80 value 83.480195
iter 90 value 82.680873
iter 100 value 82.594103
final value 82.594103
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 106.089916
iter 10 value 97.468339
iter 20 value 87.463464
iter 30 value 83.143312
iter 40 value 81.437452
iter 50 value 81.049268
iter 60 value 80.726276
iter 70 value 80.373121
iter 80 value 80.348527
iter 90 value 80.319468
iter 100 value 80.275871
final value 80.275871
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 118.047780
iter 10 value 94.129980
iter 20 value 88.703453
iter 30 value 85.200376
iter 40 value 84.315903
iter 50 value 82.611979
iter 60 value 82.271667
iter 70 value 81.636427
iter 80 value 81.457434
iter 90 value 81.421826
iter 100 value 81.325231
final value 81.325231
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 104.297106
iter 10 value 96.402009
iter 20 value 94.981966
iter 30 value 93.869296
iter 40 value 91.534110
iter 50 value 84.518098
iter 60 value 83.177492
iter 70 value 81.989990
iter 80 value 81.321483
iter 90 value 80.830824
iter 100 value 80.745042
final value 80.745042
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 117.912140
iter 10 value 93.459927
iter 20 value 88.991007
iter 30 value 87.163167
iter 40 value 86.028597
iter 50 value 85.361274
iter 60 value 84.624962
iter 70 value 84.153232
iter 80 value 82.326195
iter 90 value 80.877698
iter 100 value 80.572903
final value 80.572903
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 112.847704
iter 10 value 96.620326
iter 20 value 93.845753
iter 30 value 85.593289
iter 40 value 83.844656
iter 50 value 83.751205
iter 60 value 83.232092
iter 70 value 82.660210
iter 80 value 82.214827
iter 90 value 82.082367
iter 100 value 82.046679
final value 82.046679
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 99.202124
final value 94.485903
converged
Fitting Repeat 2
# weights: 103
initial value 98.812884
final value 94.485782
converged
Fitting Repeat 3
# weights: 103
initial value 98.566095
final value 94.485576
converged
Fitting Repeat 4
# weights: 103
initial value 99.406011
final value 94.485738
converged
Fitting Repeat 5
# weights: 103
initial value 96.017663
final value 94.485825
converged
Fitting Repeat 1
# weights: 305
initial value 97.495833
iter 10 value 94.489363
iter 20 value 94.453271
iter 30 value 90.382478
iter 40 value 85.126786
iter 50 value 84.974429
final value 84.974360
converged
Fitting Repeat 2
# weights: 305
initial value 96.832334
iter 10 value 94.489178
iter 20 value 92.434970
final value 92.029967
converged
Fitting Repeat 3
# weights: 305
initial value 100.222307
iter 10 value 94.506551
iter 20 value 94.493916
iter 30 value 90.253461
iter 40 value 90.213222
iter 50 value 89.726929
iter 60 value 89.271446
iter 70 value 89.214817
iter 80 value 88.070982
iter 90 value 87.863861
iter 100 value 85.373943
final value 85.373943
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 108.051521
iter 10 value 94.489217
iter 20 value 94.484572
iter 30 value 94.373938
iter 40 value 84.448125
iter 50 value 84.343160
iter 60 value 84.342647
iter 70 value 84.342104
iter 80 value 84.308258
iter 90 value 84.307497
iter 100 value 84.005933
final value 84.005933
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 100.431310
iter 10 value 94.471600
iter 20 value 94.467495
final value 94.467398
converged
Fitting Repeat 1
# weights: 507
initial value 109.456672
iter 10 value 94.475235
iter 20 value 94.468170
final value 94.467655
converged
Fitting Repeat 2
# weights: 507
initial value 96.350523
iter 10 value 93.999517
iter 20 value 93.980704
iter 30 value 93.946880
iter 40 value 93.941504
final value 93.941131
converged
Fitting Repeat 3
# weights: 507
initial value 102.331087
iter 10 value 94.141556
iter 20 value 93.734046
iter 30 value 93.730103
iter 40 value 93.724625
iter 50 value 93.481020
iter 60 value 93.478489
iter 70 value 93.442798
final value 93.442703
converged
Fitting Repeat 4
# weights: 507
initial value 134.565131
iter 10 value 94.475611
iter 20 value 94.468255
final value 94.467606
converged
Fitting Repeat 5
# weights: 507
initial value 106.803989
iter 10 value 94.475379
iter 20 value 94.392025
iter 30 value 93.392511
final value 93.291531
converged
Fitting Repeat 1
# weights: 103
initial value 95.655344
iter 10 value 93.021623
iter 20 value 83.564358
iter 30 value 83.432626
iter 40 value 83.235190
iter 50 value 83.144605
iter 60 value 83.144463
final value 83.144462
converged
Fitting Repeat 2
# weights: 103
initial value 107.692542
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 95.758697
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 96.834293
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 101.813716
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 93.368640
iter 10 value 84.854739
iter 20 value 84.717614
iter 30 value 83.324897
iter 40 value 83.317595
iter 40 value 83.317595
iter 40 value 83.317595
final value 83.317595
converged
Fitting Repeat 2
# weights: 305
initial value 104.284574
final value 94.052910
converged
Fitting Repeat 3
# weights: 305
initial value 94.370280
final value 93.697143
converged
Fitting Repeat 4
# weights: 305
initial value 95.401259
final value 94.052910
converged
Fitting Repeat 5
# weights: 305
initial value 95.753572
final value 94.052910
converged
Fitting Repeat 1
# weights: 507
initial value 102.174707
iter 10 value 93.496583
final value 93.491422
converged
Fitting Repeat 2
# weights: 507
initial value 97.802908
iter 10 value 93.326854
final value 93.180233
converged
Fitting Repeat 3
# weights: 507
initial value 96.100998
final value 94.052910
converged
Fitting Repeat 4
# weights: 507
initial value 102.397810
final value 93.288889
converged
Fitting Repeat 5
# weights: 507
initial value 123.959023
final value 94.052910
converged
Fitting Repeat 1
# weights: 103
initial value 98.050211
iter 10 value 93.996690
iter 20 value 86.361264
iter 30 value 85.573310
iter 40 value 85.315437
iter 50 value 83.935535
iter 60 value 83.442345
iter 70 value 83.381186
final value 83.380508
converged
Fitting Repeat 2
# weights: 103
initial value 113.072701
iter 10 value 93.063624
iter 20 value 87.826070
iter 30 value 85.378897
iter 40 value 84.025529
iter 50 value 83.539048
iter 60 value 83.174052
iter 70 value 83.011154
iter 80 value 82.959847
final value 82.958889
converged
Fitting Repeat 3
# weights: 103
initial value 98.835267
iter 10 value 89.286200
iter 20 value 85.611632
iter 30 value 84.260883
iter 40 value 83.386170
iter 50 value 83.379391
final value 83.379198
converged
Fitting Repeat 4
# weights: 103
initial value 98.729931
iter 10 value 93.552126
iter 20 value 93.261570
iter 30 value 93.258268
iter 40 value 93.005887
iter 50 value 89.268663
iter 60 value 86.948278
iter 70 value 84.508055
iter 80 value 84.125366
iter 90 value 83.438287
iter 100 value 83.380584
final value 83.380584
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 98.910757
iter 10 value 93.936591
iter 20 value 86.796748
iter 30 value 86.443052
iter 40 value 86.254795
iter 50 value 85.138249
iter 60 value 83.744204
iter 70 value 83.682199
iter 80 value 83.659723
iter 90 value 83.658339
final value 83.658328
converged
Fitting Repeat 1
# weights: 305
initial value 104.688851
iter 10 value 91.701180
iter 20 value 84.178722
iter 30 value 83.955052
iter 40 value 82.396107
iter 50 value 81.822019
iter 60 value 81.560042
iter 70 value 81.151797
iter 80 value 80.971879
iter 90 value 80.963309
iter 100 value 80.872940
final value 80.872940
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 101.143875
iter 10 value 96.041808
iter 20 value 85.972737
iter 30 value 84.087978
iter 40 value 83.929018
iter 50 value 83.240378
iter 60 value 82.452470
iter 70 value 81.531488
iter 80 value 81.376591
iter 90 value 81.145620
iter 100 value 80.604003
final value 80.604003
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 100.497178
iter 10 value 94.241079
iter 20 value 87.241001
iter 30 value 85.410591
iter 40 value 84.474706
iter 50 value 83.399671
iter 60 value 82.039418
iter 70 value 81.286499
iter 80 value 81.199127
iter 90 value 81.092979
iter 100 value 81.047930
final value 81.047930
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 112.073678
iter 10 value 95.726166
iter 20 value 91.345493
iter 30 value 85.824716
iter 40 value 84.454022
iter 50 value 82.781605
iter 60 value 82.451070
iter 70 value 81.920809
iter 80 value 81.571939
iter 90 value 81.331375
iter 100 value 80.912276
final value 80.912276
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 109.730039
iter 10 value 94.084136
iter 20 value 92.586491
iter 30 value 85.784345
iter 40 value 84.032854
iter 50 value 83.585680
iter 60 value 82.875374
iter 70 value 81.822630
iter 80 value 81.597610
iter 90 value 81.540270
iter 100 value 81.495890
final value 81.495890
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 103.849158
iter 10 value 94.483397
iter 20 value 84.825100
iter 30 value 84.157692
iter 40 value 83.988864
iter 50 value 82.642860
iter 60 value 81.283644
iter 70 value 80.897818
iter 80 value 80.781979
iter 90 value 80.770891
iter 100 value 80.582307
final value 80.582307
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 105.859882
iter 10 value 93.386896
iter 20 value 87.367350
iter 30 value 84.678689
iter 40 value 82.125386
iter 50 value 81.211284
iter 60 value 80.804979
iter 70 value 80.757425
iter 80 value 80.687311
iter 90 value 80.470968
iter 100 value 80.298506
final value 80.298506
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 121.339077
iter 10 value 94.034446
iter 20 value 87.448901
iter 30 value 84.211227
iter 40 value 83.164193
iter 50 value 82.173553
iter 60 value 81.372790
iter 70 value 81.192315
iter 80 value 81.068695
iter 90 value 80.934038
iter 100 value 80.862368
final value 80.862368
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 126.523535
iter 10 value 93.877459
iter 20 value 87.868923
iter 30 value 85.533536
iter 40 value 85.283541
iter 50 value 84.155483
iter 60 value 82.022626
iter 70 value 81.239573
iter 80 value 80.813269
iter 90 value 80.698865
iter 100 value 80.679681
final value 80.679681
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 123.167315
iter 10 value 94.031692
iter 20 value 91.103804
iter 30 value 85.824629
iter 40 value 82.651393
iter 50 value 81.307493
iter 60 value 80.977626
iter 70 value 80.699003
iter 80 value 80.335323
iter 90 value 80.240245
iter 100 value 80.129595
final value 80.129595
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 99.257423
final value 94.054527
converged
Fitting Repeat 2
# weights: 103
initial value 100.653716
final value 94.054738
converged
Fitting Repeat 3
# weights: 103
initial value 95.900331
iter 10 value 93.479036
iter 20 value 93.446526
final value 93.439856
converged
Fitting Repeat 4
# weights: 103
initial value 99.093435
final value 94.054701
converged
Fitting Repeat 5
# weights: 103
initial value 93.736999
iter 10 value 85.410681
iter 20 value 84.467899
iter 30 value 84.439772
iter 40 value 84.431286
iter 50 value 84.429989
final value 84.429949
converged
Fitting Repeat 1
# weights: 305
initial value 125.530055
iter 10 value 93.609145
iter 20 value 93.444269
iter 30 value 93.442585
iter 40 value 93.442122
iter 50 value 93.441921
iter 60 value 93.438595
iter 70 value 92.920116
iter 80 value 89.273035
iter 90 value 86.673634
iter 100 value 86.003849
final value 86.003849
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 98.594626
iter 10 value 93.920897
iter 20 value 93.275473
final value 93.192815
converged
Fitting Repeat 3
# weights: 305
initial value 116.958854
iter 10 value 93.198532
iter 20 value 93.197124
iter 30 value 93.193795
final value 93.193771
converged
Fitting Repeat 4
# weights: 305
initial value 99.533573
iter 10 value 94.055536
iter 20 value 93.788492
final value 93.192812
converged
Fitting Repeat 5
# weights: 305
initial value 100.085903
iter 10 value 94.058197
iter 20 value 91.239514
iter 30 value 87.621658
iter 40 value 86.136144
iter 50 value 86.135460
iter 60 value 85.401314
iter 70 value 84.088352
iter 80 value 84.071023
iter 90 value 84.070735
iter 100 value 84.028112
final value 84.028112
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 143.346304
iter 10 value 93.924258
iter 20 value 93.842734
iter 30 value 93.193073
iter 40 value 86.205156
iter 50 value 84.715940
iter 60 value 84.707802
iter 70 value 84.703038
iter 80 value 84.700301
iter 90 value 84.700132
iter 90 value 84.700132
final value 84.700132
converged
Fitting Repeat 2
# weights: 507
initial value 108.887674
iter 10 value 93.923424
iter 20 value 92.717691
iter 30 value 88.010990
iter 40 value 87.504788
iter 50 value 87.503413
iter 60 value 84.790326
iter 70 value 82.793380
final value 82.789610
converged
Fitting Repeat 3
# weights: 507
initial value 110.486581
iter 10 value 94.060805
iter 20 value 94.052919
iter 30 value 93.194502
iter 40 value 93.192705
iter 40 value 93.192705
iter 40 value 93.192704
final value 93.192704
converged
Fitting Repeat 4
# weights: 507
initial value 100.730750
iter 10 value 93.705597
iter 20 value 93.167609
iter 30 value 93.146977
iter 40 value 93.146854
final value 93.146828
converged
Fitting Repeat 5
# weights: 507
initial value 117.951068
iter 10 value 94.061634
iter 20 value 93.440105
iter 30 value 93.193253
iter 40 value 93.185206
iter 50 value 87.804039
iter 60 value 84.252210
iter 70 value 82.277768
iter 80 value 80.460836
iter 90 value 80.072989
iter 100 value 80.036041
final value 80.036041
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 127.536090
iter 10 value 117.221201
iter 20 value 115.225332
iter 30 value 109.112131
iter 40 value 107.256259
iter 50 value 105.994830
iter 60 value 105.521655
iter 70 value 103.242043
iter 80 value 102.324222
iter 90 value 102.030682
iter 100 value 101.501519
final value 101.501519
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 130.942568
iter 10 value 117.918506
iter 20 value 117.865943
iter 30 value 115.595284
iter 40 value 108.511075
iter 50 value 105.989514
iter 60 value 104.575712
iter 70 value 103.353844
iter 80 value 102.717416
iter 90 value 101.640612
iter 100 value 100.988972
final value 100.988972
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 134.100925
iter 10 value 117.122479
iter 20 value 107.643673
iter 30 value 106.193374
iter 40 value 102.653145
iter 50 value 101.963344
iter 60 value 101.648337
iter 70 value 101.426548
iter 80 value 101.380963
iter 90 value 101.137396
iter 100 value 101.005560
final value 101.005560
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 151.485706
iter 10 value 120.803430
iter 20 value 110.275365
iter 30 value 104.812012
iter 40 value 101.633558
iter 50 value 100.879374
iter 60 value 100.713408
iter 70 value 100.627999
iter 80 value 100.547975
iter 90 value 100.438413
iter 100 value 100.274921
final value 100.274921
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 133.364391
iter 10 value 114.990171
iter 20 value 107.507510
iter 30 value 107.205874
iter 40 value 105.632945
iter 50 value 103.379651
iter 60 value 102.312106
iter 70 value 101.938468
iter 80 value 101.339636
iter 90 value 101.132854
iter 100 value 100.969925
final value 100.969925
stopped after 100 iterations
svmRadial
ranger
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
RUNIT TEST PROTOCOL -- Wed Apr 1 00:30:29 2026
***********************************************
Number of test functions: 7
Number of errors: 0
Number of failures: 0
1 Test Suite :
HPiP RUnit Tests - 7 test functions, 0 errors, 0 failures
Number of test functions: 7
Number of errors: 0
Number of failures: 0
Warning messages:
1: `repeats` has no meaning for this resampling method.
2: executing %dopar% sequentially: no parallel backend registered
>
>
>
>
> proc.time()
user system elapsed
40.117 1.112 99.108
HPiP.Rcheck/HPiP-Ex.timings
| name | user | system | elapsed | |
| FSmethod | 32.819 | 0.421 | 33.241 | |
| FreqInteractors | 0.44 | 0.02 | 0.46 | |
| calculateAAC | 0.031 | 0.000 | 0.031 | |
| calculateAutocor | 0.302 | 0.006 | 0.309 | |
| calculateCTDC | 0.074 | 0.001 | 0.075 | |
| calculateCTDD | 0.519 | 0.001 | 0.521 | |
| calculateCTDT | 0.192 | 0.005 | 0.197 | |
| calculateCTriad | 0.355 | 0.010 | 0.365 | |
| calculateDC | 0.083 | 0.001 | 0.084 | |
| calculateF | 0.304 | 0.000 | 0.304 | |
| calculateKSAAP | 0.098 | 0.002 | 0.100 | |
| calculateQD_Sm | 1.568 | 0.011 | 1.579 | |
| calculateTC | 1.471 | 0.023 | 1.494 | |
| calculateTC_Sm | 0.238 | 0.004 | 0.242 | |
| corr_plot | 33.806 | 0.516 | 34.322 | |
| enrichfindP | 0.608 | 0.037 | 13.260 | |
| enrichfind_hp | 0.070 | 0.001 | 1.027 | |
| enrichplot | 0.529 | 0.004 | 0.533 | |
| filter_missing_values | 0.000 | 0.001 | 0.001 | |
| getFASTA | 0.382 | 0.029 | 3.677 | |
| getHPI | 0.000 | 0.000 | 0.001 | |
| get_negativePPI | 0.001 | 0.000 | 0.001 | |
| get_positivePPI | 0 | 0 | 0 | |
| impute_missing_data | 0.001 | 0.000 | 0.001 | |
| plotPPI | 0.076 | 0.002 | 0.078 | |
| pred_ensembel | 12.731 | 0.090 | 11.508 | |
| var_imp | 33.125 | 0.451 | 33.575 | |