| Back to Multiple platform build/check report for BioC 3.21: simplified long |
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This page was generated on 2025-10-16 11:40 -0400 (Thu, 16 Oct 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4833 |
| merida1 | macOS 12.7.6 Monterey | x86_64 | 4.5.1 RC (2025-06-05 r88288) -- "Great Square Root" | 4614 |
| kjohnson1 | macOS 13.7.5 Ventura | arm64 | 4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" | 4555 |
| kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4586 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 699/2341 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| ExperimentHub 2.16.1 (landing page) Bioconductor Package Maintainer
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | WARNINGS |  | ||||||||
| merida1 | macOS 12.7.6 Monterey / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| kjohnson1 | macOS 13.7.5 Ventura / arm64 | OK | OK | WARNINGS | OK | | ||||||||
| kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | WARNINGS | ||||||||||
|
To the developers/maintainers of the ExperimentHub package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ExperimentHub.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: ExperimentHub |
| Version: 2.16.1 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:ExperimentHub.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings ExperimentHub_2.16.1.tar.gz |
| StartedAt: 2025-10-14 21:21:42 -0400 (Tue, 14 Oct 2025) |
| EndedAt: 2025-10-14 21:23:47 -0400 (Tue, 14 Oct 2025) |
| EllapsedTime: 125.2 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: ExperimentHub.Rcheck |
| Warnings: 1 |
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### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:ExperimentHub.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings ExperimentHub_2.16.1.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.21-bioc/meat/ExperimentHub.Rcheck’
* using R version 4.5.1 Patched (2025-06-14 r88325)
* using platform: aarch64-apple-darwin20
* R was compiled by
Apple clang version 16.0.0 (clang-1600.0.26.6)
GNU Fortran (GCC) 14.2.0
* running under: macOS Ventura 13.7.5
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ExperimentHub/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ExperimentHub’ version ‘2.16.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ExperimentHub’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... WARNING
checkRd: (5) ExperimentHub-class.Rd:74-87: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:96-99: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:100-103: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:104-107: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:108-112: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:113-119: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:120-124: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:125-130: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:131-165: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:173-177: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:178-182: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:183-189: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:190-211: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:212-220: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:221-225: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:226-230: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:237-241: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:242-246: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:247-258: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:259-262: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:263-266: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:267-274: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:275-282: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:283-288: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:295-299: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:300-304: \item in \describe must have non-empty label
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING
See
‘/Users/biocbuild/bbs-3.21-bioc/meat/ExperimentHub.Rcheck/00check.log’
for details.
ExperimentHub.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL ExperimentHub ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library’ * installing *source* package ‘ExperimentHub’ ... ** this is package ‘ExperimentHub’ version ‘2.16.1’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ExperimentHub)
ExperimentHub.Rcheck/ExperimentHub-Ex.timings
| name | user | system | elapsed | |
| ExperimentHub-class | 2.260 | 0.182 | 3.124 | |
| getExperimentHubOption | 0.000 | 0.000 | 0.001 | |
| listResources | 2.189 | 0.254 | 3.664 | |