Multiple platform build/check report for BioC 3.22 - BUILD results for EnrichmentBrowser on taishan

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.3 LTS)	x86_64	4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"	4883
taishan	Linux (openEuler 24.03 LTS)	aarch64	4.5.0 (2025-04-11) -- "How About a Twenty-Six"	4671
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for EnrichmentBrowser on taishan

To the developers/maintainers of the EnrichmentBrowser package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/EnrichmentBrowser.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results

Summary

Package: EnrichmentBrowser

Version: 2.40.0

Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data EnrichmentBrowser

StartedAt: 2026-01-02 01:41:57 -0000 (Fri, 02 Jan 2026)

EndedAt: 2026-01-02 01:43:32 -0000 (Fri, 02 Jan 2026)

EllapsedTime: 95.0 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data EnrichmentBrowser
###
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* checking for file ‘EnrichmentBrowser/DESCRIPTION’ ... OK
* preparing ‘EnrichmentBrowser’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘EnrichmentBrowser.Rmd’ using rmarkdown

Quitting from EnrichmentBrowser.Rmd:686-689 [compile-grn]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `fetchRemote()`:
! cannot download pathway data: are you offline?
---
Backtrace:
     ▆
  1. └─EnrichmentBrowser::compileGRN(org = "hsa", db = "kegg")
  2.   └─EnrichmentBrowser:::.compileGRNFromGraphite(...)
  3.     └─base::lapply(...)
  4.       └─EnrichmentBrowser (local) FUN(X[[i]], ...)
  5.         ├─EnrichmentBrowser:::.processDB(...)
  6.         │ └─base::tolower(pwys@name)
  7.         └─graphite::pathways(gorg, d)
  8.           └─graphite:::loadData(paste(species, database, sep = "-"))
  9.             └─graphite:::withArchiveDir(...)
 10.               └─graphite (local) func(path)
 11.                 └─graphite:::fetchRemote(name, path)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'EnrichmentBrowser.Rmd' failed with diagnostics:
cannot download pathway data: are you offline?
--- failed re-building ‘EnrichmentBrowser.Rmd’

SUMMARY: processing the following file failed:
  ‘EnrichmentBrowser.Rmd’

Error: Vignette re-building failed.
Execution halted