| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-11-11 12:03 -0500 (Tue, 11 Nov 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" | 4902 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4638 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 338/2361 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| ChemmineR 3.62.0 (landing page) Thomas Girke
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | ERROR | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
|
To the developers/maintainers of the ChemmineR package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ChemmineR.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: ChemmineR |
| Version: 3.62.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ChemmineR |
| StartedAt: 2025-11-10 15:54:35 -0500 (Mon, 10 Nov 2025) |
| EndedAt: 2025-11-10 15:54:49 -0500 (Mon, 10 Nov 2025) |
| EllapsedTime: 13.2 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ChemmineR
###
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* checking for file ‘ChemmineR/DESCRIPTION’ ... OK
* preparing ‘ChemmineR’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘ChemmineR.Rmd’ using rmarkdown
2025-11-10 15:54:47.264 R[81486:675864781] XType: Using static font registry.
Quitting from ChemmineR.Rmd:537-539 [unnamed-chunk-39]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `file()`:
! cannot open the connection to 'https://cluster.hpcc.ucr.edu/~tgirke/Documents/R_BioCond/Samples/v3000.sdf'
---
Backtrace:
▆
1. └─ChemmineR::read.SDFset(...)
2. └─ChemmineR::read.SDFstr(sdfstr = sdfstr)
3. └─base::readLines(sdfstr)
4. └─base::file(con, "r")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'ChemmineR.Rmd' failed with diagnostics:
cannot open the connection to 'https://cluster.hpcc.ucr.edu/~tgirke/Documents/R_BioCond/Samples/v3000.sdf'
--- failed re-building ‘ChemmineR.Rmd’
SUMMARY: processing the following file failed:
‘ChemmineR.Rmd’
Error: Vignette re-building failed.
Execution halted