##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data Biobase
###
##############################################################################
##############################################################################
* checking for file ‘Biobase/DESCRIPTION’ ... OK
* preparing ‘Biobase’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘BiobaseDevelopment.Rmd’ using rmarkdown
Error: processing vignette 'BiobaseDevelopment.Rmd' failed with diagnostics:
subscript out of bounds
--- failed re-building ‘BiobaseDevelopment.Rmd’
--- re-building ‘esApply.Rmd’ using rmarkdown
Error: processing vignette 'esApply.Rmd' failed with diagnostics:
subscript out of bounds
--- failed re-building ‘esApply.Rmd’
--- re-building ‘ExpressionSetIntroduction.Rnw’ using Sweave
Loading required package: BiocGenerics
Loading required package: generics
Attaching package: ‘generics’
The following objects are masked from ‘package:base’:
as.difftime, as.factor, as.ordered, intersect,
is.element, setdiff, setequal, union
Attaching package: ‘BiocGenerics’
The following objects are masked from ‘package:stats’:
IQR, mad, sd, var, xtabs
The following objects are masked from ‘package:base’:
Filter, Find, Map, Position, Reduce, anyDuplicated,
aperm, append, as.data.frame, basename, cbind,
colnames, dirname, do.call, duplicated, eval, evalq,
get, grep, grepl, is.unsorted, lapply, mapply, match,
mget, order, paste, pmax, pmax.int, pmin, pmin.int,
rank, rbind, rownames, sapply, saveRDS, table,
tapply, unique, unsplit, which.max, which.min
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages
'citation("pkgname")'.
--- finished re-building ‘ExpressionSetIntroduction.Rnw’
SUMMARY: processing the following files failed:
‘BiobaseDevelopment.Rmd’ ‘esApply.Rmd’
Error: Vignette re-building failed.
Execution halted
