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This page was generated on 2025-09-25 11:41 -0400 (Thu, 25 Sep 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 4827
merida1macOS 12.7.5 Montereyx86_644.5.1 RC (2025-06-05 r88288) -- "Great Square Root" 4608
kjohnson1macOS 13.6.6 Venturaarm644.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" 4549
kunpeng2Linux (openEuler 24.03 LTS)aarch64R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" 4581
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 261/2341HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BUSpaRse 1.22.2  (landing page)
Lambda Moses
Snapshot Date: 2025-09-22 13:40 -0400 (Mon, 22 Sep 2025)
git_url: https://git.bioconductor.org/packages/BUSpaRse
git_branch: RELEASE_3_21
git_last_commit: df371c4
git_last_commit_date: 2025-09-15 15:34:54 -0400 (Mon, 15 Sep 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  skipped
merida1macOS 12.7.5 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson1macOS 13.6.6 Ventura / arm64  OK    ERROR  skippedskipped
kunpeng2Linux (openEuler 24.03 LTS) / aarch64  OK    ERROR  skipped

BUILD results for BUSpaRse on kunpeng2

To the developers/maintainers of the BUSpaRse package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BUSpaRse.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: BUSpaRse
Version: 1.22.2
Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data BUSpaRse
StartedAt: 2025-09-22 23:11:00 -0000 (Mon, 22 Sep 2025)
EndedAt: 2025-09-22 23:43:46 -0000 (Mon, 22 Sep 2025)
EllapsedTime: 1965.4 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data BUSpaRse
###
##############################################################################
##############################################################################


* checking for file ‘BUSpaRse/DESCRIPTION’ ... OK
* preparing ‘BUSpaRse’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘sparse-matrix.Rmd’ using rmarkdown

Quitting from sparse-matrix.Rmd:42-46 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `sort_tr2g()`:
! Some transcripts in the kallisto index are absent from tr2g.
---
Backtrace:
    ▆
 1. └─BUSpaRse::transcript2gene(...)
 2.   └─BUSpaRse::sort_tr2g(tr2g, kallisto_out_path = kallisto_out_path)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'sparse-matrix.Rmd' failed with diagnostics:
Some transcripts in the kallisto index are absent from tr2g.
--- failed re-building ‘sparse-matrix.Rmd’

--- re-building ‘tr2g.Rmd’ using rmarkdown
--- finished re-building ‘tr2g.Rmd’

SUMMARY: processing the following file failed:
  ‘sparse-matrix.Rmd’

Error: Vignette re-building failed.
Execution halted