| Back to Build/check report for BioC 3.22: simplified long |
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This page was generated on 2026-03-24 11:57 -0400 (Tue, 24 Mar 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4893 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 58/2361 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| AlphaMissenseR 1.6.1 (landing page) Martin Morgan
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| See other builds for AlphaMissenseR in R Universe. | ||||||||||||||
|
To the developers/maintainers of the AlphaMissenseR package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/AlphaMissenseR.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: AlphaMissenseR |
| Version: 1.6.1 |
| Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 AlphaMissenseR |
| StartedAt: 2026-03-23 16:16:18 -0400 (Mon, 23 Mar 2026) |
| EndedAt: 2026-03-23 16:18:05 -0400 (Mon, 23 Mar 2026) |
| EllapsedTime: 107.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 AlphaMissenseR
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* checking for file ‘AlphaMissenseR/DESCRIPTION’ ... OK
* preparing ‘AlphaMissenseR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘alphafold.Rmd’ using rmarkdown
Quitting from alphafold.Rmd:82-84 [median-pathogenicity]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `af_prediction_view()`:
! 'af_prediction_view()' could not find UniProt accession 'P35557'
---
Backtrace:
▆
1. └─AlphaMissenseR::af_prediction_view(P35557_aa)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'alphafold.Rmd' failed with diagnostics:
'af_prediction_view()' could not find UniProt accession 'P35557'
--- failed re-building ‘alphafold.Rmd’
--- re-building ‘benchmarking.Rmd’ using rmarkdown
--- finished re-building ‘benchmarking.Rmd’
--- re-building ‘clinvar.Rmd’ using rmarkdown
--- finished re-building ‘clinvar.Rmd’
--- re-building ‘introduction.Rmd’ using rmarkdown
--- finished re-building ‘introduction.Rmd’
--- re-building ‘issues.Rmd’ using rmarkdown
--- finished re-building ‘issues.Rmd’
SUMMARY: processing the following file failed:
‘alphafold.Rmd’
Error: Vignette re-building failed.
Execution halted