| Back to Workflows build report for BioC 3.23 |
This page was generated on 2025-11-25 16:30 -0500 (Tue, 25 Nov 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences" | 4830 |
| lconway | macOS 12.7.6 Monterey | x86_64 | R Under development (unstable) (2025-10-21 r88958) -- "Unsuffered Consequences" | 4606 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 25/28 | Hostname | OS / Arch | INSTALL | BUILD | ||||||||
| simpleSingleCell 1.35.0 (landing page) Aaron Lun
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | ||||||||
| lconway | macOS 12.7.6 Monterey / x86_64 | OK | OK | |||||||||
|
To the developers/maintainers of the simpleSingleCell package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: simpleSingleCell |
| Version: 1.35.0 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data simpleSingleCell |
| StartedAt: 2025-11-25 13:10:39 -0500 (Tue, 25 Nov 2025) |
| EndedAt: 2025-11-25 13:10:59 -0500 (Tue, 25 Nov 2025) |
| EllapsedTime: 20.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data simpleSingleCell
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* checking for file ‘simpleSingleCell/DESCRIPTION’ ... OK
* preparing ‘simpleSingleCell’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘batch.Rmd’ using rmarkdown
--- finished re-building ‘batch.Rmd’
--- re-building ‘bigdata.Rmd’ using rmarkdown
--- finished re-building ‘bigdata.Rmd’
--- re-building ‘de.Rmd’ using rmarkdown
--- finished re-building ‘de.Rmd’
--- re-building ‘doublets.Rmd’ using rmarkdown
--- finished re-building ‘doublets.Rmd’
--- re-building ‘intro.Rmd’ using rmarkdown
--- finished re-building ‘intro.Rmd’
--- re-building ‘misc.Rmd’ using rmarkdown
Quitting from misc.Rmd:50-78 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `bfcrpath()`:
! not all 'rnames' found or unique.
---
Backtrace:
▆
1. ├─BiocFileCache::bfcrpath(...)
2. └─BiocFileCache::bfcrpath(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'misc.Rmd' failed with diagnostics:
not all 'rnames' found or unique.
--- failed re-building ‘misc.Rmd’
--- re-building ‘multibatch.Rmd’ using rmarkdown
--- finished re-building ‘multibatch.Rmd’
--- re-building ‘qc.Rmd’ using rmarkdown
--- finished re-building ‘qc.Rmd’
--- re-building ‘reads.Rmd’ using rmarkdown
--- finished re-building ‘reads.Rmd’
--- re-building ‘spike.Rmd’ using rmarkdown
--- finished re-building ‘spike.Rmd’
--- re-building ‘tenx.Rmd’ using rmarkdown
--- finished re-building ‘tenx.Rmd’
--- re-building ‘umis.Rmd’ using rmarkdown
--- finished re-building ‘umis.Rmd’
--- re-building ‘var.Rmd’ using rmarkdown
--- finished re-building ‘var.Rmd’
SUMMARY: processing the following file failed:
‘misc.Rmd’
Error: Vignette re-building failed.
Execution halted