| Back to Workflows build report for BioC 3.24 |
This page was generated on 2026-05-06 14:17 -0400 (Wed, 06 May 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 RC (2026-04-17 r89917) -- "Because it was There" | 4878 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 17/28 | Hostname | OS / Arch | INSTALL | BUILD | ||||||||
| methylationArrayAnalysis 1.37.0 (landing page) Jovana Maksimovic
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | ERROR | ||||||||
|
To the developers/maintainers of the methylationArrayAnalysis package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: methylationArrayAnalysis |
| Version: 1.37.0 |
| Command: /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data methylationArrayAnalysis |
| StartedAt: 2026-05-05 13:06:19 -0400 (Tue, 05 May 2026) |
| EndedAt: 2026-05-05 13:16:17 -0400 (Tue, 05 May 2026) |
| EllapsedTime: 598.4 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data methylationArrayAnalysis
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* checking for file ‘methylationArrayAnalysis/DESCRIPTION’ ... OK
* preparing ‘methylationArrayAnalysis’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘methylationArrayAnalysis.Rmd’ using rmarkdown
Quitting from methylationArrayAnalysis.Rmd:459-464 [figure10]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/httr2_http_504>
Error in `httr2::req_perform()`:
! HTTP 504 Gateway Timeout.
---
Backtrace:
▆
1. └─DMRcate::DMR.plot(...)
2. ├─base::suppressWarnings(...)
3. │ └─base::withCallingHandlers(...)
4. └─Gviz::BiomartGeneRegionTrack(...)
5. └─methods::new(...)
6. ├─methods::initialize(value, ...)
7. └─Gviz::initialize(value, ...)
8. └─Gviz (local) .local(.Object, ...)
9. └─Gviz:::.cacheMartData(.Object, chromosome, staged)
10. └─Gviz:::.fetchBMData(bmtrack, chromosome, staged)
11. └─biomaRt::getBM(...)
12. └─biomaRt:::.submitQueryXML(...)
13. └─httr2::req_perform(req)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'methylationArrayAnalysis.Rmd' failed with diagnostics:
HTTP 504 Gateway Timeout.
--- failed re-building ‘methylationArrayAnalysis.Rmd’
SUMMARY: processing the following file failed:
‘methylationArrayAnalysis.Rmd’
Error: Vignette re-building failed.
Execution halted