Back to Workflows build report for BioC 3.23

This page was generated on 2025-10-31 10:55 -0400 (Fri, 31 Oct 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences" 4474
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 15/28HostnameOS / ArchINSTALLBUILD
liftOver 1.35.0  (landing page)
Bioconductor Package Maintainer
Snapshot Date: 2025-10-31 10:02 -0400 (Fri, 31 Oct 2025)
git_url: https://git.bioconductor.org/packages/liftOver
git_branch: devel
git_last_commit: 433b8c4
git_last_commit_date: 2025-10-29 09:46:46 -0400 (Wed, 29 Oct 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  ERROR    ERROR  

BUILD results for liftOver on nebbiolo1

To the developers/maintainers of the liftOver package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: liftOver
Version: 1.35.0
Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data liftOver
StartedAt: 2025-10-31 10:08:56 -0400 (Fri, 31 Oct 2025)
EndedAt: 2025-10-31 10:09:13 -0400 (Fri, 31 Oct 2025)
EllapsedTime: 17.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data liftOver
###
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* checking for file ‘liftOver/DESCRIPTION’ ... OK
* preparing ‘liftOver’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
      -----------------------------------
* installing *source* package ‘liftOver’ ...
** this is package ‘liftOver’ version ‘1.35.0’
** using staged installation
** data
*** moving datasets to lazyload DB
** inst
** help
No man pages found in package  ‘liftOver’ 
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Error: package or namespace load failed for ‘OrganismDbi’:
 object ‘microRNAs’ is not exported by 'namespace:GenomicFeatures'
Error : package ‘OrganismDbi’ could not be loaded
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/tmp/Rtmpm4KSXT/Rinst39f0e737917211/liftOver’
      -----------------------------------
ERROR: package installation failed