| Back to Build/check report for BioC 3.22 experimental data | 
 | 
This page was generated on 2025-10-28 15:41 -0400 (Tue, 28 Oct 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs | 
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" | 4901 | 
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 253/435 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| miRNATarget 1.47.0  (landing page) Y-h. Taguchi 
 | nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK |  | |||||||
| To the developers/maintainers of the miRNATarget package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. | 
| Package: miRNATarget | 
| Version: 1.47.0 | 
| Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:miRNATarget.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings miRNATarget_1.47.0.tar.gz | 
| StartedAt: 2025-10-28 12:43:06 -0400 (Tue, 28 Oct 2025) | 
| EndedAt: 2025-10-28 12:44:30 -0400 (Tue, 28 Oct 2025) | 
| EllapsedTime: 83.7 seconds | 
| RetCode: 0 | 
| Status: OK | 
| CheckDir: miRNATarget.Rcheck | 
| Warnings: 0 | 
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###
### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --install=check:miRNATarget.install-out.txt --library=/home/biocbuild/bbs-3.22-bioc/R/site-library --timings miRNATarget_1.47.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.22-data-experiment/meat/miRNATarget.Rcheck’
* using R version 4.5.1 Patched (2025-08-23 r88802)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* checking for file ‘miRNATarget/DESCRIPTION’ ... OK
* this is package ‘miRNATarget’ version ‘1.47.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  vignettes/.goutputstream-8N717W
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘miRNATarget’ can be installed ... OK
* checking installed package size ... INFO
  installed size is 59.6Mb
  sub-directories of 1Mb or more:
    data  59.3Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.22-data-experiment/meat/miRNATarget.Rcheck/00check.log’
for details.
miRNATarget.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD INSTALL miRNATarget ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.22-bioc/R/site-library’ * installing *source* package ‘miRNATarget’ ... ** this is package ‘miRNATarget’ version ‘1.47.0’ ** using staged installation ** data ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (miRNATarget)
miRNATarget.Rcheck/miRNATarget-Ex.timings
| name | user | system | elapsed | |
| HS_conv_id | 0.014 | 0.001 | 0.017 | |
| HS_refseq_to_affy_hc_g110 | 0.005 | 0.001 | 0.004 | |
| HS_refseq_to_affy_hg_focus | 0.017 | 0.000 | 0.016 | |
| HS_refseq_to_affy_hg_u133_plus_2 | 0.059 | 0.000 | 0.060 | |
| HS_refseq_to_affy_hg_u133a | 0.036 | 0.001 | 0.037 | |
| HS_refseq_to_affy_hg_u133a_2 | 0.035 | 0.000 | 0.036 | |
| HS_refseq_to_affy_hg_u133b | 0.017 | 0.000 | 0.018 | |
| HS_refseq_to_affy_hg_u95a | 0.021 | 0.001 | 0.024 | |
| HS_refseq_to_affy_hg_u95av2 | 0.021 | 0.000 | 0.022 | |
| HS_refseq_to_affy_hg_u95b | 0.012 | 0.001 | 0.014 | |
| HS_refseq_to_affy_hg_u95c | 0.010 | 0.000 | 0.011 | |
| HS_refseq_to_affy_hg_u95d | 0.006 | 0.000 | 0.006 | |
| HS_refseq_to_affy_hg_u95e | 0.008 | 0.003 | 0.010 | |
| HS_refseq_to_affy_huex_1_0_st_v2 | 0.777 | 0.029 | 0.808 | |
| HS_refseq_to_affy_hugene_1_0_st_v1 | 0.050 | 0.001 | 0.051 | |
| HS_refseq_to_affy_hugenefl | 0.014 | 0.000 | 0.014 | |
| HS_refseq_to_affy_u133_x3p | 0.127 | 0.003 | 0.131 | |
| HS_refseq_to_agilent_cgh_44b | 0.011 | 0.000 | 0.011 | |
| HS_refseq_to_agilent_wholegenome | 0.065 | 0.004 | 0.068 | |
| HS_refseq_to_canonical_transcript_stable_id | 0.064 | 0.000 | 0.066 | |
| HS_refseq_to_ccds | 0.032 | 0.001 | 0.033 | |
| HS_refseq_to_codelink | 0.034 | 0.001 | 0.035 | |
| HS_refseq_to_efg_agilent_sureprint_g3_ge_8x60k | 0.002 | 0.000 | 0.001 | |
| HS_refseq_to_efg_agilent_wholegenome_4x44k_v1 | 0.001 | 0.000 | 0.001 | |
| HS_refseq_to_efg_agilent_wholegenome_4x44k_v2 | 0.001 | 0.000 | 0.001 | |
| HS_refseq_to_embl | 0.663 | 0.018 | 0.684 | |
| HS_refseq_to_ensembl_exon_id | 0.000 | 0.000 | 0.002 | |
| HS_refseq_to_ensembl_gene_id | 0.146 | 0.000 | 0.147 | |
| HS_refseq_to_ensembl_peptide_id | 0.044 | 0.002 | 0.046 | |
| HS_refseq_to_ensembl_transcript_id | 0.055 | 0.000 | 0.056 | |
| HS_refseq_to_entrezgene | 0.053 | 0.000 | 0.053 | |
| HS_refseq_to_hgnc_id | 0.050 | 0.000 | 0.049 | |
| HS_refseq_to_hgnc_symbol | 0.118 | 0.004 | 0.121 | |
| HS_refseq_to_hgnc_transcript_name | 0.045 | 0.001 | 0.046 | |
| HS_refseq_to_illumina_humanht_12 | 0.045 | 0.002 | 0.047 | |
| HS_refseq_to_illumina_humanwg_6_v1 | 0.043 | 0.000 | 0.043 | |
| HS_refseq_to_illumina_humanwg_6_v2 | 0.037 | 0.000 | 0.037 | |
| HS_refseq_to_illumina_humanwg_6_v3 | 0.044 | 0.000 | 0.044 | |
| HS_refseq_to_interpro | 0.114 | 0.000 | 0.114 | |
| HS_refseq_to_ipi | 0.102 | 0.007 | 0.108 | |
| HS_refseq_to_merops | 0.004 | 0.000 | 0.004 | |
| HS_refseq_to_pdb | 0.084 | 0.002 | 0.086 | |
| HS_refseq_to_pfam | 0.066 | 0.001 | 0.067 | |
| HS_refseq_to_phalanx_onearray | 0.039 | 0.000 | 0.039 | |
| HS_refseq_to_protein_id | 0.902 | 0.007 | 0.909 | |
| HS_refseq_to_refseq_dna | 0.055 | 0.002 | 0.057 | |
| HS_refseq_to_refseq_genomic | 0.000 | 0.001 | 0.001 | |
| HS_refseq_to_refseq_peptide | 0.090 | 0.001 | 0.091 | |
| HS_refseq_to_rfam | 0.002 | 0.000 | 0.002 | |
| HS_refseq_to_rfam_gene_name | 0.000 | 0.000 | 0.001 | |
| HS_refseq_to_rfam_transcript_name | 0.000 | 0.000 | 0.001 | |
| HS_refseq_to_smart | 0.033 | 0.000 | 0.034 | |
| HS_refseq_to_tigrfam | 0.005 | 0.000 | 0.005 | |
| HS_refseq_to_ucsc | 0.047 | 0.000 | 0.047 | |
| HS_refseq_to_unigene | 0.061 | 0.000 | 0.061 | |
| HS_refseq_to_uniprot_genename | 0.040 | 0.001 | 0.041 | |
| HS_refseq_to_uniprot_genename_transcript_name | 0.001 | 0.000 | 0.001 | |
| HS_refseq_to_uniprot_sptrembl | 0.001 | 0.000 | 0.002 | |
| HS_refseq_to_uniprot_swissprot | 0.001 | 0.000 | 0.001 | |
| HS_refseq_to_uniprot_swissprot_accession | 0.000 | 0.001 | 0.001 | |
| HS_refseq_to_wikigene_id | 0.000 | 0.001 | 0.001 | |
| HS_refseq_to_wikigene_name | 0.043 | 0.001 | 0.045 | |
| MM_conv_id | 0.001 | 0.001 | 0.003 | |
| MM_refseq_to_affy_mg_u74a | 0.016 | 0.000 | 0.016 | |
| MM_refseq_to_affy_mg_u74av2 | 0.014 | 0.000 | 0.014 | |
| MM_refseq_to_affy_mg_u74b | 0.012 | 0.000 | 0.012 | |
| MM_refseq_to_affy_mg_u74bv2 | 0.012 | 0.000 | 0.011 | |
| MM_refseq_to_affy_mg_u74c | 0.004 | 0.000 | 0.004 | |
| MM_refseq_to_affy_mg_u74cv2 | 0.006 | 0.000 | 0.005 | |
| MM_refseq_to_affy_moe430a | 0.030 | 0.002 | 0.031 | |
| MM_refseq_to_affy_moe430b | 0.015 | 0.000 | 0.015 | |
| MM_refseq_to_affy_moex_1_0_st_v1 | 0.628 | 0.008 | 0.636 | |
| MM_refseq_to_affy_mogene_1_0_st_v1 | 0.035 | 0.001 | 0.036 | |
| MM_refseq_to_affy_mouse430_2 | 0.042 | 0.000 | 0.042 | |
| MM_refseq_to_affy_mouse430a_2 | 0.027 | 0.000 | 0.027 | |
| MM_refseq_to_affy_mu11ksuba | 0.009 | 0.001 | 0.009 | |
| MM_refseq_to_affy_mu11ksubb | 0.007 | 0.000 | 0.007 | |
| MM_refseq_to_agilent_wholegenome | 0.053 | 0.002 | 0.055 | |
| MM_refseq_to_canonical_transcript_stable_id | 0.052 | 0.001 | 0.053 | |
| MM_refseq_to_ccds | 0.027 | 0.000 | 0.026 | |
| MM_refseq_to_codelink | 0.029 | 0.000 | 0.028 | |
| MM_refseq_to_efg_agilent_sureprint_g3_ge_8x60k | 0.002 | 0.000 | 0.001 | |
| MM_refseq_to_efg_agilent_wholegenome_4x44k_v1 | 0.001 | 0.000 | 0.001 | |
| MM_refseq_to_efg_agilent_wholegenome_4x44k_v2 | 0.001 | 0.000 | 0.001 | |
| MM_refseq_to_embl | 0.273 | 0.000 | 0.273 | |
| MM_refseq_to_ensembl_exon_id | 0.001 | 0.000 | 0.001 | |
| MM_refseq_to_ensembl_gene_id | 0.034 | 0.000 | 0.034 | |
| MM_refseq_to_ensembl_peptide_id | 0.034 | 0.000 | 0.034 | |
| MM_refseq_to_ensembl_transcript_id | 0.037 | 0.000 | 0.036 | |
| MM_refseq_to_entrezgene | 0.031 | 0.001 | 0.032 | |
| MM_refseq_to_fantom | 0.09 | 0.00 | 0.09 | |
| MM_refseq_to_illumina_mousewg_6_v1 | 0.045 | 0.000 | 0.045 | |
| MM_refseq_to_illumina_mousewg_6_v2 | 0.046 | 0.000 | 0.046 | |
| MM_refseq_to_interpro | 0.095 | 0.000 | 0.096 | |
| MM_refseq_to_ipi | 0.001 | 0.000 | 0.001 | |
| MM_refseq_to_merops | 0.004 | 0.000 | 0.003 | |
| MM_refseq_to_mgi_id | 0.035 | 0.000 | 0.035 | |
| MM_refseq_to_mgi_symbol | 0.036 | 0.000 | 0.035 | |
| MM_refseq_to_mgi_transcript_name | 0.038 | 0.000 | 0.038 | |
| MM_refseq_to_pdb | 0.009 | 0.000 | 0.009 | |
| MM_refseq_to_pfam | 0.056 | 0.000 | 0.056 | |
| MM_refseq_to_phalanx_onearray | 0.033 | 0.000 | 0.034 | |
| MM_refseq_to_protein_id | 0.357 | 0.000 | 0.357 | |
| MM_refseq_to_refseq_dna | 0.046 | 0.000 | 0.045 | |
| MM_refseq_to_refseq_peptide | 0.068 | 0.000 | 0.067 | |
| MM_refseq_to_rfam | 0.002 | 0.000 | 0.001 | |
| MM_refseq_to_rfam_gene_name | 0.000 | 0.001 | 0.001 | |
| MM_refseq_to_rfam_transcript_name | 0.001 | 0.000 | 0.001 | |
| MM_refseq_to_smart | 0.027 | 0.001 | 0.028 | |
| MM_refseq_to_tigrfam | 0.004 | 0.001 | 0.004 | |
| MM_refseq_to_ucsc | 0.038 | 0.000 | 0.038 | |
| MM_refseq_to_unigene | 0.047 | 0.001 | 0.049 | |
| MM_refseq_to_uniprot_genename | 0.219 | 0.001 | 0.220 | |
| MM_refseq_to_uniprot_genename_transcript_name | 0.000 | 0.001 | 0.001 | |
| MM_refseq_to_uniprot_sptrembl | 0.001 | 0.000 | 0.001 | |
| MM_refseq_to_uniprot_swissprot | 0.001 | 0.000 | 0.001 | |
| MM_refseq_to_uniprot_swissprot_accession | 0.002 | 0.000 | 0.001 | |
| MM_refseq_to_wikigene_id | 0.000 | 0.001 | 0.001 | |
| MM_refseq_to_wikigene_name | 0.033 | 0.001 | 0.034 | |
| TBL2 | 0.809 | 0.086 | 0.895 | |
| TBL2_HS | 1.218 | 0.179 | 1.396 | |
| TBL2_MM | 0.689 | 0.125 | 0.813 | |
| conv_id | 0.002 | 0.000 | 0.002 | |
| id_conv | 0.029 | 0.000 | 0.029 | |